View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5055_low_2 (Length: 442)
Name: NF5055_low_2
Description: NF5055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5055_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 32 - 427
Target Start/End: Complemental strand, 28947621 - 28947226
Alignment:
| Q |
32 |
aatcatatgcataaattgaaagaattcatgtaacaactttagcatttaaaatgtcaatagagaacgttgcaagaatccatgtatttatgtacttacttcg |
131 |
Q |
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| T |
28947621 |
aatcatatgcataaattgaaagagttcatgtaacaactttagcatttaaactgtcaatagagaacgttgcaagaatccatgtatttatgtacttacttcg |
28947522 |
T |
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| Q |
132 |
aaaactgtgacaacatggtttgtaacaaattatattttttcgcatcagcctgtttgtacaaatcgctcatatcatctacgaacgaacgcaaaacttcatg |
231 |
Q |
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| T |
28947521 |
aaaattgtgacaacatggtttgtaacaaattatattttttcgcatcagcctgtttgtacaaatcgctcatatcatctacgaacgaacgcaaaacttcatg |
28947422 |
T |
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| Q |
232 |
tttccgacttccttcctaactagttttgcataaccttgaatggttttgttgatttcaatggaccacaaatctttcaacatgaaatgcaaaatttcattat |
331 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| ||||| |
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| T |
28947421 |
tttctgacttccttcctaactagttttgcataaccttgaatggttttgttgatttcaatagaccacaaatctttcaacctgaaatgcaaaatttaattat |
28947322 |
T |
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| Q |
332 |
aaaccatgtccacgtttaatattttcaaaattcaattatcacaaaagtttttaaaatctaaacacacttaggtgaacaaagacgtttgattaactt |
427 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28947321 |
aaaccatgtccacgtttaatattttcaaaattcaattatcacaaaagtttttaaaatctaaacacacttaggtgaacaaagacgtttgattaactt |
28947226 |
T |
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