View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5055_low_23 (Length: 204)
Name: NF5055_low_23
Description: NF5055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5055_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 181; Significance: 5e-98; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 181; E-Value: 5e-98
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 52827318 - 52827502
Alignment:
| Q |
1 |
tattatacgaactaactttgacatccttattgtagatgttgtcgtgtttttctttcccttcttcgtttataccttgactagagttagagagggttacaaa |
100 |
Q |
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| T |
52827318 |
tattatacgaactaactttgacatccttattgtagatgttgtcgtgtttttctttcccttcttcgtttataccttgactagagttagagagggtaacaaa |
52827417 |
T |
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| Q |
101 |
agtggcattgcctttattaggagcattgacatttgtgtgttcttcatcacctttgagcccaacaattgctattaaaaggagtaat |
185 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52827418 |
agtggcattgcctttattaggagcattgacatttgtgtgttcttcatcacctttgagcccaacaattgctattaaaaggagtaat |
52827502 |
T |
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