View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5055_low_5 (Length: 396)

Name: NF5055_low_5
Description: NF5055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5055_low_5
NF5055_low_5
[»] chr8 (5 HSPs)
chr8 (19-390)||(12930676-12931048)
chr8 (27-390)||(12935422-12935786)
chr8 (161-231)||(26504985-26505055)
chr8 (117-229)||(15588948-15589060)
chr8 (35-80)||(26504850-26504895)
[»] chr4 (9 HSPs)
chr4 (19-390)||(14173937-14174310)
chr4 (19-390)||(28611560-28611933)
chr4 (26-390)||(14178691-14179057)
chr4 (26-390)||(28606805-28607171)
chr4 (27-390)||(44161586-44161949)
chr4 (27-382)||(11104477-11104829)
chr4 (26-328)||(48826701-48827000)
chr4 (122-223)||(48708155-48708256)
chr4 (138-231)||(24726288-24726381)
[»] chr1 (1 HSPs)
chr1 (27-390)||(34907139-34907503)
[»] chr7 (7 HSPs)
chr7 (27-390)||(37040426-37040791)
chr7 (19-379)||(15290243-15290602)
chr7 (27-329)||(12099060-12099361)
chr7 (174-384)||(12082021-12082227)
chr7 (27-109)||(12084669-12084751)
chr7 (119-231)||(2757307-2757418)
chr7 (23-87)||(2757209-2757273)
[»] chr5 (5 HSPs)
chr5 (27-374)||(29106878-29107224)
chr5 (26-382)||(42910992-42911346)
chr5 (19-107)||(38994691-38994779)
chr5 (118-208)||(38997230-38997320)
chr5 (18-82)||(38997129-38997193)
[»] chr2 (1 HSPs)
chr2 (26-390)||(8539183-8539549)
[»] chr3 (3 HSPs)
chr3 (245-383)||(51302168-51302306)
chr3 (19-109)||(51302937-51303027)
chr3 (117-153)||(51302308-51302344)
[»] chr6 (2 HSPs)
chr6 (27-208)||(2100199-2100379)
chr6 (201-231)||(2100723-2100753)


Alignment Details
Target: chr8 (Bit Score: 279; Significance: 1e-156; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 19 - 390
Target Start/End: Complemental strand, 12931048 - 12930676
Alignment:
Q  19 ataccacttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnn-- 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||             
T  12931048 ataccacttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagactggatcttgcagcgcagcggtagcgataaaaaa 12930949  T
Q  117 -tgaacaccaatatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaat 215  Q
     ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12930948 atgaacaccaatatttaacgtggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaat 12930849  T
Q  216 attctctccactctctnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagt 315  Q
    ||||||||||||||||            |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||    
T  12930848 attctctccactctctcacacacaca--agagatacaatatagtgtttcccgtgagacctacttttattctaatgctattattttatagcacctagaagt 12930751  T
Q  316 tatagagatgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcttctcac 390  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  12930750 tatagagatgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcctctcac 12930676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 27 - 390
Target Start/End: Complemental strand, 12935786 - 12935422
Alignment:
Q  27 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnn---tgaacac 123  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||||||||||||||          |||||||    
T  12935786 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaattcaaaagaaactggatcttgcagcgcagcggtagcgataaaaaaatgaacac 12935687  T
Q  124 caatatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctc 223  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12935686 caatatttaacgtggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctc 12935587  T
Q  224 cactctctnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagaga 323  Q
    ||||||||            |||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||||||||    
T  12935586 cactctctcacacacaca--agagatacaatatagtgtttcccgtgagacctacttttactctaatgctattattttatagcacctagaagttatagaga 12935489  T
Q  324 tgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcttctcac 390  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  12935488 tgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcctctcac 12935422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 161 - 231
Target Start/End: Original strand, 26504985 - 26505055
Alignment:
Q  161 aaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctccactctct 231  Q
    |||||||| | ||||||||| |||||||||| |||||| |||| |||||||||||||||| || |||||||    
T  26504985 aaaaccacagtacaaactccaaaaaatattcaactataataaaaaatattacaatattctttcaactctct 26505055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 117 - 229
Target Start/End: Complemental strand, 15589060 - 15588948
Alignment:
Q  117 tgaacaccaatatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaata 216  Q
    |||||| |||||||||   || ||||||||||| || |||| |||||| || | |||||||||  ||||||||| |||| ||| ||| |||||||||| |    
T  15589060 tgaacatcaatatttattttgaaaaaccctctattaatgagagaaaaatcaagtgacaaactctaaaaaatatttcactttatcaaacaatattacaaca 15588961  T
Q  217 ttctctccactct 229  Q
    || ||||||||||    
T  15588960 ttttctccactct 15588948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 80
Target Start/End: Original strand, 26504850 - 26504895
Alignment:
Q  35 tcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaa 80  Q
    |||||||| |||| | ||||||||||||||||| ||||||||||||    
T  26504850 tcgacgagtttaatggaagtgtaaattaaaatttcaaaatccaaaa 26504895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 277; Significance: 1e-155; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 19 - 390
Target Start/End: Complemental strand, 14174310 - 14173937
Alignment:
Q  19 ataccacttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnn-- 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||              
T  14174310 ataccacttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagactggatcttgcagcgcagcggtagtgataaaaaa 14174211  T
Q  117 --tgaacaccaatatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaa 214  Q
      ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14174210 aatgaacaccaatatttaacgtggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaa 14174111  T
Q  215 tattctctccactctctnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaag 314  Q
    |||||||||||||||||            |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  14174110 tattctctccactctctcacacacaca--agagatacaatatagtgtttcccgtgagacctacttctattctaatgctattattttatagcacctagaag 14174013  T
Q  315 ttatagagatgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcttctcac 390  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  14174012 ttatagagatgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcctctcac 14173937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 19 - 390
Target Start/End: Original strand, 28611560 - 28611933
Alignment:
Q  19 ataccacttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnn-- 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||             
T  28611560 ataccacttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagactggatcttgcagcgcagcggtagcgataaaaaa 28611659  T
Q  117 --tgaacaccaatatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaa 214  Q
      ||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28611660 aatgaacaccaatatttaacgtgaaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaa 28611759  T
Q  215 tattctctccactctctnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaag 314  Q
    |||||||||||||||||            |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  28611760 tattctctccactctctcacacacaca--agagatacaatatagtgtttcccgtgagacctacttctattctaatgctattattttatagcacctagaag 28611857  T
Q  315 ttatagagatgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcttctcac 390  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  28611858 ttatagagatgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcctctcac 28611933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 26 - 390
Target Start/End: Complemental strand, 14179057 - 14178691
Alignment:
Q  26 ttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnn----tgaac 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||           |||||    
T  14179057 ttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagactggatcttgcagcgcagcggtagcaataaaaaaaatgaac 14178958  T
Q  122 accaatatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctc 221  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14178957 accaatatttaacgtggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctc 14178858  T
Q  222 tccactctctnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttataga 321  Q
    ||||||||||            |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  14178857 tccactctctcacacacaca--agagatacaatatagtgtttcccgtgagacctacttctattctaatgctattattttatagcacctagaagttataga 14178760  T
Q  322 gatgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcttctcac 390  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  14178759 gatgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcctctcac 14178691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 26 - 390
Target Start/End: Original strand, 28606805 - 28607171
Alignment:
Q  26 ttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnn----tgaac 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||           | |||    
T  28606805 ttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagactggatcttgcagcgcagcggtagcgataaaaaaaattaac 28606904  T
Q  122 accaatatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctc 221  Q
    |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28606905 accaatatttaacgtgaaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctc 28607004  T
Q  222 tccactctctnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttataga 321  Q
    ||||||||||            |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  28607005 tccactctctcacacacaca--agagatacaatatagtgtttcccgtgagacctacttctattctaatgctattattttatagcacctagaagttataga 28607102  T
Q  322 gatgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcttctcac 390  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  28607103 gatgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcctctcac 28607171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 27 - 390
Target Start/End: Complemental strand, 44161949 - 44161586
Alignment:
Q  27 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnn----tgaaca 122  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           ||||||    
T  44161949 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcgataaaaaaaatgaaca 44161850  T
Q  123 ccaatatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctct 222  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||    
T  44161849 ccaatatttaacgtggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaat--tctct 44161752  T
Q  223 ccactctctnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagag 322  Q
    |||||||||            ||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  44161751 ccactctcttacacacaca--agagatacaatatagtgtttcccgtaagacctacttctattctaatgctattattttatagcacctagaagttatagag 44161654  T
Q  323 atgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcttctcac 390  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||    
T  44161653 atgatacccacccggtgtatttttcccacactctctggatttactcaacactctattattcctctcac 44161586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 27 - 382
Target Start/End: Complemental strand, 11104829 - 11104477
Alignment:
Q  27 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnn-tgaacacca 125  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||        |||||||||    
T  11104829 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagctgtagcgataaaaatgaacacca 11104730  T
Q  126 atatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctcca 225  Q
    ||||||||| | ||||| |||||||||  ||||| ||| |||||||||||||||||||||||||||||| ||||  ||||||||||||||||||||||||    
T  11104729 atatttaacatagaaaatcctctaatatcgagggtaaa-ccacgggacaaactccgaaaaatattccaccatatctaagaatattacaatattctctcca 11104631  T
Q  226 ctctctnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagagatg 325  Q
    ||||||            ||||||||||||||||||||||||||||||| ||| |||||| ||||||||||| ||||| |||||||||||||||||||||    
T  11104630 ctctcttacacacaa---agagatacaatatagtgtttcccgtgagacccactcctattcaaatgctattattttataacacctagaagttatagagatg 11104534  T
Q  326 atacccacccggtgtatttttcccacactctctggatttactcaacactctattttt 382  Q
    ||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  11104533 atatccacccggtgtatttttcctacactctctggatttactcaacactctattttt 11104477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 26 - 328
Target Start/End: Original strand, 48826701 - 48827000
Alignment:
Q  26 ttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnnt--gaacac 123  Q
    |||||||| |||||||||||||||||| |||||||||||||| |||||| |||  |||||||||||||||||||||||||||||          ||||||    
T  48826701 ttgttgggatcgacgagcttaacgcaattgtaaattaaaatttcaaaattcaa--gagattggatcttgcagcgcagcggtagcgatagaaaaagaacac 48826798  T
Q  124 caatatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctc 223  Q
    ||||||||||||||||||| |||||||||| |||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||     
T  48826799 caatatttaacgtggaaaatcctctaataccgagggaaaaatcacgggacaa-ctccgaaaaatattccactatattaaagaatattacaatattctctt 48826897  T
Q  224 cactctctnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagaga 323  Q
    | ||||||            |||||||||||||||||||||||||||||   ||| |||||  ||||||||||| |||||||||||||||||||||||||    
T  48826898 cgctctct--tacacacacaagagatacaatatagtgtttcccgtgagattcactcctatttgaatgctattattttatagcacctagaagttatagaga 48826995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 122 - 223
Target Start/End: Original strand, 48708155 - 48708256
Alignment:
Q  122 accaatatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctc 221  Q
    ||||||||||||| || ||||| || ||||||| || ||||||||||| |||||||||| ||||||||| || ||||||||| |||||||||||||||||    
T  48708155 accaatatttaacatgaaaaactctataatactaagagaaaaaccacgtgacaaactccaaaaaatatttcattatattaaaaaatattacaatattctc 48708254  T
Q  222 tc 223  Q
    ||    
T  48708255 tc 48708256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 138 - 231
Target Start/End: Original strand, 24726288 - 24726381
Alignment:
Q  138 gaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctccactctct 231  Q
    ||||||| |||||||   |||||||| ||||| ||||||||| ||||||||||||| |||||||||||| || | ||||||||||||| |||||    
T  24726288 gaaaaccatctaatatcaagggaaaagccacgagacaaactctgaaaaatattccattatattaaagaacataataatattctctccattctct 24726381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 27 - 390
Target Start/End: Complemental strand, 34907503 - 34907139
Alignment:
Q  27 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnn---tgaacac 123  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||          |||||||    
T  34907503 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagactggatcttgcagcgcagcggtagcgataaaaaaatgaacac 34907404  T
Q  124 caatatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctc 223  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34907403 caatatttaacgtggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctc 34907304  T
Q  224 cactctctnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagaga 323  Q
    ||||||||            |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||    
T  34907303 cactctctcacacacaca--agagatacaatatagtgtttcccgtgagacctacttttattctaatgctattattttatagcacctagaagttatagaga 34907206  T
Q  324 tgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcttctcac 390  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  34907205 tgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcctctcac 34907139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 257; Significance: 1e-143; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 27 - 390
Target Start/End: Original strand, 37040426 - 37040791
Alignment:
Q  27 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnn----tgaaca 122  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||           ||||||    
T  37040426 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaaaagactggatcttgcagcgcagcggtagcgataaaaaaaatgaaca 37040525  T
Q  123 ccaatatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctct 222  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  37040526 ccaatatttaacgtggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattttct 37040625  T
Q  223 ccactctctnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagag 322  Q
    |||||||||            |||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  37040626 ccactctctcacacacaca--agagatacaatatagtgttttccgtgagacctacttctattctaatgctattattttatagcacctagaagttatagag 37040723  T
Q  323 atgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcttctcac 390  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  37040724 atgatacccacccgatgtatttttcccacactctctggatttactcaacactctatttttcctctcac 37040791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 19 - 379
Target Start/End: Complemental strand, 15290602 - 15290243
Alignment:
Q  19 ataccacttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaa-gagattggatcttgcagcgcagcggtagcnnnnnnn- 116  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |||||||||||||||||||||||  ||||            
T  15290602 ataccacttgttgggctcgacgagcttaacgcaattgtaaattaaaatttcaaaatccaaaaagagattggatcttgcagcgcagccttagcgataaaaa 15290503  T
Q  117 ---tgaacaccaatatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattaca 213  Q
       ||||||||||||||||||||||||||||||||||||| |||| | ||||||||||||||||||| ||| || |||||||||||| ||||||||||||    
T  15290502 aaatgaacaccaatatttaacgtggaaaaccctctaataccgaggtataaaccacgggacaaactccaaaagattttccactatatttaagaatattaca 15290403  T
Q  214 atattctctccactctctnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaa 313  Q
    ||||||||||||||||||            |||||||||||||||||||| |||||||||| ||| |||||| ||||||||  ||||  |||||||||||    
T  15290402 atattctctccactctct--tacacacacaagagatacaatatagtgttt-ccgtgagacccactcctattcgaatgctat--tatttcagcacctagaa 15290308  T
Q  314 gttatagagatgatacccacccggtgtatttttcccacactctctggatttactcaacactctatt 379  Q
    ||||||||||||||||||||||||||||||||| ||||||| |||||||||| |||||||||||||    
T  15290307 gttatagagatgatacccacccggtgtattttt-ccacactttctggatttagtcaacactctatt 15290243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 27 - 329
Target Start/End: Complemental strand, 12099361 - 12099060
Alignment:
Q  27 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnn-tgaacacca 125  Q
    |||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||  ||||||||||| || || ||||        |||| | ||    
T  12099361 tgttgggctcgacgagtttaacgcgagtgtaaattaaaattccaaaatccaaaagagatatgatcttgcagctcaccgatagcgataaaaatgaaaagca 12099262  T
Q  126 atatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctcca 225  Q
    |||||| ||||| |||||||||||||   || |||||||||| ||||||||||||||||||  ||| |||||||||||||||||||||||||||||||||    
T  12099261 atattttacgtgaaaaaccctctaatgacgaaggaaaaaccaagggacaaactccgaaaaaatttcaactatattaaagaatattacaatattctctcca 12099162  T
Q  226 ctctctnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagagatg 325  Q
    ||||||            ||||| ||||||| |||||||  |||||||  ||| |||||| |||| |||||| ||||| |||||| ||||||||||||||    
T  12099161 ctctct--tacacgcacaagagacacaatattgtgtttctagtgagactcactcctattcaaatgatattattttataacacctaaaagttatagagatg 12099064  T
Q  326 atac 329  Q
    ||||    
T  12099063 atac 12099060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 174 - 384
Target Start/End: Complemental strand, 12082227 - 12082021
Alignment:
Q  174 aaactccgaaaaatattccactatattaaagaatattacaatattctctccactctctnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagac 273  Q
    ||||||| ||||||||||||||||||||| ||||||||||||||| ||||||||||||            |||||||||||||||||||||   ||||||    
T  12082227 aaactccaaaaaatattccactatattaa-gaatattacaatattttctccactctcttacacggaaa--agagatacaatatagtgtttctaatgagac 12082131  T
Q  274 ctacttctattctaatgctattatattatagcacctagaagttatagagatgatacccacccggtgtatttttcccacactctctggatttactcaacac 373  Q
       || |||||| |||| |||||| ||||||| |||||||||||||||||| ||||| ||||| | |||||||||| |  | ||||||||||| ||||||    
T  12082130 tcgctcctattcaaatgttattattttatagcgcctagaagttatagagataatacctacccgatatatttttccc-ctttttctggatttacccaacac 12082032  T
Q  374 tctatttttct 384  Q
    |||| ||||||    
T  12082031 tctaattttct 12082021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 27 - 109
Target Start/End: Complemental strand, 12084751 - 12084669
Alignment:
Q  27 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagc 109  Q
    |||||||||| ||||||||||| | || ||||||||||||| |||||||||| ||| ||||||||||| |||||| |||||||    
T  12084751 tgttgggctcaacgagcttaacacgagggtaaattaaaatttcaaaatccaatagacattggatcttgtagcgcaacggtagc 12084669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 119 - 231
Target Start/End: Original strand, 2757307 - 2757418
Alignment:
Q  119 aacaccaatatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatatt 218  Q
    |||||||||||||||  || ||| |||| |||| || | |||||||||| | |||||| |  ||||| |||||||||||||| || |||||| || ||||    
T  2757307 aacaccaatatttaatatgaaaacccctttaatgcttaaggaaaaaccatgagacaaattttgaaaa-tattccactatatttaaaaatattgcactatt 2757405  T
Q  219 ctctccactctct 231  Q
    |||||||||||||    
T  2757406 ctctccactctct 2757418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 87
Target Start/End: Original strand, 2757209 - 2757273
Alignment:
Q  23 cacttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattg 87  Q
    ||||||||| | || |||||||||   ||||||||||||||||||||||||| ||||||| ||||    
T  2757209 cacttgttgtgttcaacgagcttattacaagtgtaaattaaaattccaaaattcaaaagaaattg 2757273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 27 - 374
Target Start/End: Original strand, 29106878 - 29107224
Alignment:
Q  27 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnn-tgaacacca 125  Q
    ||||||| |||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||        |||||||||    
T  29106878 tgttgggatcgaggagcttaatgcaagtgtaaattaaaattccaaaatccaaaaaagattggatcttgcagcgcagcggtagcgttaaaaatgaacacca 29106977  T
Q  126 atatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctcca 225  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29106978 atatttaacgtggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctcca 29107077  T
Q  226 ctctctnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagagatg 325  Q
    ||||||            |||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |||||    
T  29107078 ctctct--tacacacacaagagatacaa-atagtgtttcccgtgagacctacttctattctaatgctattattttttagcacctagaagttataaagatg 29107174  T
Q  326 ata-cccacccggtgtatttttcccacactctctggatttactcaacact 374  Q
    ||| |||||||  |||||||||||||||||||||||||||||||||||||    
T  29107175 ataccccacccaatgtatttttcccacactctctggatttactcaacact 29107224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 26 - 382
Target Start/End: Original strand, 42910992 - 42911346
Alignment:
Q  26 ttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnn-tgaacacc 124  Q
    |||||||||||||||||||||||||||||| |||||||||||  ||||||||||||||||| |||||||||||||||||| | |        ||||||||    
T  42910992 ttgttgggctcgacgagcttaacgcaagtggaaattaaaattttaaaatccaaaagagattagatcttgcagcgcagcggcaacgataaaaatgaacacc 42911091  T
Q  125 aatatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctcc 224  Q
    |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||    
T  42911092 aatatttaacatggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaa-tattccactatatttaagaatattacaatattctctcc 42911190  T
Q  225 actctctnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagagat 324  Q
    |||||||            | ||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |||||||||||||||    
T  42911191 actctctcacacacaca--aaagatacaatatagtgtttcccttgagacctacttctattctaatgctattattttatagcaccaagaagttatagagat 42911288  T
Q  325 gatacccacccggtgtatttttcccacactctctggatttactcaacactctattttt 382  Q
    ||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||    
T  42911289 gatacccacccagtgtattttttccacactctctggatttactcaacactctattttt 42911346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 19 - 107
Target Start/End: Original strand, 38994691 - 38994779
Alignment:
Q  19 ataccacttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggta 107  Q
    ||||||||||||||||| ||||| ||||| || |||||||||||||||||||||| |||||  | |||||||||||||| |||||||||    
T  38994691 ataccacttgttgggcttgacgatcttaatgctagtgtaaattaaaattccaaaacccaaacaaaattggatcttgcagtgcagcggta 38994779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 118 - 208
Target Start/End: Original strand, 38997230 - 38997320
Alignment:
Q  118 gaacaccaatatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaata 208  Q
    ||||| |||||||| |||| |||||||||||||||  ||  ||||||| |||||||||||||| ||||||| |||| ||||||||||||||    
T  38997230 gaacagcaatattttacgtcgaaaaccctctaatatcgaacgaaaaactacgggacaaactccaaaaaataatccattatattaaagaata 38997320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 38997129 - 38997193
Alignment:
Q  18 aataccacttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaaga 82  Q
    ||||| |||||||||| |||| | |||||| ||  |||||||||||||||||| |||||||||||    
T  38997129 aatactacttgttgggttcgaagggcttaatgcgggtgtaaattaaaattccagaatccaaaaga 38997193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 26 - 390
Target Start/End: Complemental strand, 8539549 - 8539183
Alignment:
Q  26 ttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnn--tgaacac 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |         ||||||     
T  8539549 ttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaattctaaaagagattggatcttgcagcgcagcggtaacaataaaaaatgaacat 8539450  T
Q  124 caatatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctc 223  Q
    |||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||||||| ||||    
T  8539449 caatatttaacgtggaaaaccctctaataccgagggaaaaatcacgggacaaactccgaaagatattccactatatttaagaatattacaatattatctc 8539350  T
Q  224 cactctctnnnnnnnnnnnnagagatacaa---tatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatag 320  Q
    ||||||||            ||||||||||   |||||||||| |||||||||| ||| |||||| | ||||||||| ||| |||||||| |||||||||    
T  8539349 cactctct--tacacacacaagagatacaatattatagtgttt-ccgtgagacccactcctattcgattgctattattttacagcacctaaaagttatag 8539253  T
Q  321 agatgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcttctcac 390  Q
    |||||||||||| ||| |||||||||||||||||||||| ||||||| |||||| |||||||| ||||||    
T  8539252 agatgatacccatccgatgtatttttcccacactctctgaatttactgaacactatatttttcctctcac 8539183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 99; Significance: 9e-49; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 245 - 383
Target Start/End: Complemental strand, 51302306 - 51302168
Alignment:
Q  245 gagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagagatgatacccacccggtgtattt 344  Q
    |||||||||||||||||||||||||||||| ||| |||||| ||||| ||| | ||||||||||||||||||||||||||||| ||||||||||||||||    
T  51302306 gagatacaatatagtgtttcccgtgagacccactcctattcgaatgcaattgttttatagcacctagaagttatagagatgattcccacccggtgtattt 51302207  T
Q  345 ttcccacactctctggatttactcaacactctatttttc 383  Q
    |  ||||||||||||||||||||||| ||||||||||||    
T  51302206 tatccacactctctggatttactcaatactctatttttc 51302168  T

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Target: chr3; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 19 - 109
Target Start/End: Complemental strand, 51303027 - 51302937
Alignment:
Q  19 ataccacttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagc 109  Q
    ||||||||||||||| ||||||||||||| ||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||    
T  51303027 ataccacttgttgggatcgacgagcttaatgcaagtgtaaattaaaatttcaaaatccaaaacagattggatcttgcagcgcagcggtagc 51302937  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 117 - 153
Target Start/End: Complemental strand, 51302344 - 51302308
Alignment:
Q  117 tgaacaccaatatttaacgtggaaaaccctctaatac 153  Q
    |||||||||||||||||||||||||||||||||||||    
T  51302344 tgaacaccaatatttaacgtggaaaaccctctaatac 51302308  T

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Target: chr6 (Bit Score: 69; Significance: 7e-31; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 27 - 208
Target Start/End: Original strand, 2100199 - 2100379
Alignment:
Q  27 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattgga-tcttgcagcgcagcggtagcnnnnnnnt-gaacacc 124  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||| || |||||||| || | ||||||| || || ||         | ||||| |    
T  2100199 tgttgggctcgacgagcttaacacaagtgtaaattaaaattccaaaattcataagagatttgaattttgcagcacaacgataatgataaaattgaacatc 2100298  T
Q  125 aatatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaata 208  Q
    ||||||||| |||||||||||| ||||| |||| |||||||   ||| ||||||||||||||||||||||||||||||||||||    
T  2100299 aatatttaaggtggaaaaccctttaataatgagcgaaaaac---ggggcaaactccgaaaaatattccactatattaaagaata 2100379  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 231
Target Start/End: Original strand, 2100723 - 2100753
Alignment:
Q  201 aaagaatattacaatattctctccactctct 231  Q
    |||||||||||||||||||||||||||||||    
T  2100723 aaagaatattacaatattctctccactctct 2100753  T

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