View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5055_low_6 (Length: 395)
Name: NF5055_low_6
Description: NF5055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5055_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 18 - 383
Target Start/End: Original strand, 50608968 - 50609341
Alignment:
| Q |
18 |
atagcaaccttgtgttttcaggcacactgcatattttcttgttgctggagttgaacaaaagaatcaaagccttcacccttgcaaggatgcagatggaagg |
117 |
Q |
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| T |
50608968 |
atagcaaccttatgttttcaggcacactgcatattttcttgttgctggagttgaacaaaagaatcaaagccttcacccttgcaaggatgcagatggaagg |
50609067 |
T |
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| Q |
118 |
catccatgtaaaaacttttagcatttttatttctgcaaaatgttgaaggatctatcaactagtattatacaatttatatagtttttcaaatctatccggc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50609068 |
catccatgtaaaaacttttagcatttttatttctgcaaaaggttgaaggatctatcaactagtattatacaatttatatagtttttcaaatctatccggc |
50609167 |
T |
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| Q |
218 |
atcaattattgttgatgatcttgtaacaaannnnnnnnattgatgttcatgtcgttgttcatatttcaaatcattcgtagcacccgatttagacaaaact |
317 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
50609168 |
atcaattattgttgatgatcttgtaacaaattttttttattgatgttcatgtcgttgttcatatttcaaatctttcgtagcacccgatttagacaaaact |
50609267 |
T |
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| Q |
318 |
ttgcaatcatgctctaaatttgctaaatgagtttgag--------acagggaccaattatatttgacatagtat |
383 |
Q |
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|||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| |
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| T |
50609268 |
ttgcaatcatgctctaaatttgctaaatgaatttgagacactaatacagggaccaattatatttgacatagtat |
50609341 |
T |
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