View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5055_low_8 (Length: 378)

Name: NF5055_low_8
Description: NF5055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5055_low_8
NF5055_low_8
[»] chr8 (2 HSPs)
chr8 (21-345)||(20135352-20135676)
chr8 (110-154)||(21309186-21309230)
[»] chr7 (2 HSPs)
chr7 (21-345)||(44356395-44356719)
chr7 (100-156)||(13059703-13059759)
[»] chr5 (1 HSPs)
chr5 (66-156)||(21110669-21110759)
[»] chr1 (2 HSPs)
chr1 (101-159)||(2890799-2890857)
chr1 (99-159)||(14972572-14972632)
[»] chr4 (1 HSPs)
chr4 (97-157)||(14554186-14554246)
[»] chr3 (1 HSPs)
chr3 (110-161)||(52348541-52348592)
[»] scaffold0031 (1 HSPs)
scaffold0031 (94-152)||(75148-75206)
[»] chr2 (1 HSPs)
chr2 (99-159)||(45721356-45721416)


Alignment Details
Target: chr8 (Bit Score: 313; Significance: 1e-176; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 21 - 345
Target Start/End: Complemental strand, 20135676 - 20135352
Alignment:
Q  21 tcccattccccttgaacttcgtctaaaccgtcaacattatgtggctgcaataacgtttccggtctatcatcattcacctcctccgtcataaaagcatcct 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  20135676 tcccattccccttgaacttcgtctaaaccgtcaacattatgtggctgcaataacgtttccggtctatcatcattcacctcctccgtcataaaagcgtcct 20135577  T
Q  121 cccccaaacaacatccccattcctccaccaacttaataaaatgcttgcgatcatcaatcaaaaattcaggagtcgaattcacgatttctatttgaggcgt 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  20135576 cccccaaacaacatccccattcctccaccaacttaataaaatgcttgcgatcatcaatcaaaaattcaggagtcgaattcacgatttctatttgaggcat 20135477  T
Q  221 caaaatgagaatacgagcgtagtccaacctcgctctatccgccgtacattcatctaaatgaataaaccgtccaacaccattcacacacatcctgaagaaa 320  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  20135476 caaaatgagaatacgagcgtagtccaacctcgctctatccgccgtacattcatctaaatgaataaaccgtccaacacgattcacacacatcctgaagaaa 20135377  T
Q  321 tcatcattccaagcatgtatgggaa 345  Q
    |||||||||||||||||||||||||    
T  20135376 tcatcattccaagcatgtatgggaa 20135352  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 154
Target Start/End: Complemental strand, 21309230 - 21309186
Alignment:
Q  110 aaaagcatcctcccccaaacaacatccccattcctccaccaactt 154  Q
    |||||||||||||||||||  ||| ||||||||||||||||||||    
T  21309230 aaaagcatcctcccccaaattacacccccattcctccaccaactt 21309186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 313; Significance: 1e-176; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 21 - 345
Target Start/End: Original strand, 44356395 - 44356719
Alignment:
Q  21 tcccattccccttgaacttcgtctaaaccgtcaacattatgtggctgcaataacgtttccggtctatcatcattcacctcctccgtcataaaagcatcct 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  44356395 tcccattccccttgaacttcgtctaaaccgtcaacattatgtggctgcaataacgtttccggtctatcatcattcacctcctccgtcataaaagcgtcct 44356494  T
Q  121 cccccaaacaacatccccattcctccaccaacttaataaaatgcttgcgatcatcaatcaaaaattcaggagtcgaattcacgatttctatttgaggcgt 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  44356495 cccccaaacaacatccccattcctccaccaacttaataaaatgcttgcgatcatcaatcaaaaattcaggagtcgaattcacgatttctatttgaggcat 44356594  T
Q  221 caaaatgagaatacgagcgtagtccaacctcgctctatccgccgtacattcatctaaatgaataaaccgtccaacaccattcacacacatcctgaagaaa 320  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  44356595 caaaatgagaatacgagcgtagtccaacctcgctctatccgccgtacattcatctaaatgaataaaccgtccaacacgattcacacacatcctgaagaaa 44356694  T
Q  321 tcatcattccaagcatgtatgggaa 345  Q
    |||||||||||||||||||||||||    
T  44356695 tcatcattccaagcatgtatgggaa 44356719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 100 - 156
Target Start/End: Complemental strand, 13059759 - 13059703
Alignment:
Q  100 cctccgtcataaaagcatcctcccccaaacaacatccccattcctccaccaacttaa 156  Q
    |||||||||||||  ||||||||||||||   || ||||||||||||||||| ||||    
T  13059759 cctccgtcataaacacatcctcccccaaattgcacccccattcctccaccaatttaa 13059703  T

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Target: chr5 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 66 - 156
Target Start/End: Original strand, 21110669 - 21110759
Alignment:
Q  66 tgcaataacgtttccggtctatcatcattcacctcctccgtcataaaagcatcctcccccaaacaacatccccattcctccaccaacttaa 156  Q
    |||||| | ||||||||||||  |||  |||||||||||||||| ||||||||||||||||||  ||| ||||| ||||||||||||||||    
T  21110669 tgcaatcatgtttccggtctagaatcgatcacctcctccgtcatgaaagcatcctcccccaaattacaaccccactcctccaccaacttaa 21110759  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 101 - 159
Target Start/End: Complemental strand, 2890857 - 2890799
Alignment:
Q  101 ctccgtcataaaagcatcctcccccaaacaacatccccattcctccaccaacttaataa 159  Q
    |||||||||||| ||||||||||||||    ||||||||||||||||||| ||||||||    
T  2890857 ctccgtcataaaggcatcctcccccaagttgcatccccattcctccaccagcttaataa 2890799  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 99 - 159
Target Start/End: Complemental strand, 14972632 - 14972572
Alignment:
Q  99 tcctccgtcataaaagcatcctcccccaaacaacatccccattcctccaccaacttaataa 159  Q
    |||||| ||| ||| |||||||||||||||  ||| ||||| |||||||||||||| ||||    
T  14972632 tcctccctcaaaaaggcatcctcccccaaattacacccccactcctccaccaacttgataa 14972572  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 157
Target Start/End: Original strand, 14554186 - 14554246
Alignment:
Q  97 cctcctccgtcataaaagcatcctcccccaaacaacatccccattcctccaccaacttaat 157  Q
    |||||||||||| ||||||||| ||||| |||  ||||||||||| ||||||||| |||||    
T  14554186 cctcctccgtcaaaaaagcatcatcccctaaatgacatccccatttctccaccaatttaat 14554246  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 110 - 161
Target Start/End: Original strand, 52348541 - 52348592
Alignment:
Q  110 aaaagcatcctcccccaaacaacatccccattcctccaccaacttaataaaa 161  Q
    ||||||||| || ||||||  |||||||| ||||||||||||||||||||||    
T  52348541 aaaagcatcttctcccaaattacatccccgttcctccaccaacttaataaaa 52348592  T

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Target: scaffold0031 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 94 - 152
Target Start/End: Original strand, 75148 - 75206
Alignment:
Q  94 tcacctcctccgtcataaaagcatcctcccccaaacaacatccccattcctccaccaac 152  Q
    ||||||||||||||||||| |||||||| |||||    |||||||| ||||||||||||    
T  75148 tcacctcctccgtcataaatgcatcctcacccaagttgcatccccactcctccaccaac 75206  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 99 - 159
Target Start/End: Original strand, 45721356 - 45721416
Alignment:
Q  99 tcctccgtcataaaagcatcctcccccaaacaacatccccattcctccaccaacttaataa 159  Q
    |||||| ||| ||| |||||||||||||||  ||| ||||| |||||||||||||| ||||    
T  45721356 tcctccttcaaaaaggcatcctcccccaaattacacccccactcctccaccaacttgataa 45721416  T

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