View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5056-Insertion-1 (Length: 1045)

Name: NF5056-Insertion-1
Description: NF5056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5056-Insertion-1
NF5056-Insertion-1
[»] chr3 (6 HSPs)
chr3 (10-1019)||(12734809-12735819)
chr3 (14-321)||(32578888-32579186)
chr3 (814-970)||(32579655-32579811)
chr3 (344-389)||(32579203-32579248)
chr3 (4-75)||(25901292-25901363)
chr3 (4-75)||(25915310-25915381)
[»] scaffold0464 (1 HSPs)
scaffold0464 (10-1019)||(7111-8112)
[»] chr7 (18 HSPs)
chr7 (14-294)||(19357683-19357957)
chr7 (14-321)||(19779351-19779649)
chr7 (14-321)||(19887734-19888032)
chr7 (814-970)||(19888504-19888660)
chr7 (814-970)||(19778723-19778879)
chr7 (14-301)||(19351092-19351370)
chr7 (14-322)||(19721769-19722065)
chr7 (814-932)||(19351793-19351911)
chr7 (838-964)||(19357055-19357181)
chr7 (439-554)||(19351469-19351584)
chr7 (874-965)||(19879702-19879793)
chr7 (870-948)||(19721197-19721275)
chr7 (867-963)||(19598578-19598674)
chr7 (343-390)||(19357587-19357634)
chr7 (344-412)||(19779266-19779334)
chr7 (344-395)||(19888049-19888100)
chr7 (256-294)||(18953167-18953205)
chr7 (256-294)||(18983214-18983252)
[»] chr2 (12 HSPs)
chr2 (14-299)||(18908832-18909108)
chr2 (14-253)||(18920788-18921027)
chr2 (14-232)||(18913580-18913798)
chr2 (817-980)||(18909593-18909753)
chr2 (819-1014)||(18914343-18914536)
chr2 (816-980)||(18921488-18921649)
chr2 (595-679)||(18914119-18914203)
chr2 (595-667)||(18921309-18921381)
chr2 (10-63)||(25377072-25377125)
chr2 (511-554)||(18914050-18914093)
chr2 (604-677)||(18909386-18909459)
chr2 (258-299)||(18913815-18913856)
[»] chr6 (5 HSPs)
chr6 (14-294)||(14749173-14749444)
chr6 (830-970)||(14748518-14748657)
chr6 (344-412)||(14749057-14749126)
chr6 (598-679)||(14748805-14748886)
chr6 (7-89)||(33576142-33576224)
[»] chr8 (1 HSPs)
chr8 (870-911)||(42693665-42693706)
[»] chr4 (2 HSPs)
chr4 (6-75)||(10553561-10553630)
chr4 (4-75)||(10571289-10571360)
[»] chr1 (2 HSPs)
chr1 (871-934)||(43986909-43986972)
chr1 (870-911)||(43907684-43907725)
[»] chr5 (1 HSPs)
chr5 (596-626)||(28764495-28764525)


Alignment Details
Target: chr3 (Bit Score: 835; Significance: 0; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 835; E-Value: 0
Query Start/End: Original strand, 10 - 1019
Target Start/End: Original strand, 12734809 - 12735819
Alignment:
Q  10 tgaatccaagaatcttgaactccgaattccatcatcatccataaaacaaaatgggttcccttgaaacggtgagaaaaacatagacgattcatcaatacag 109  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  12734809 tgaatccaagaatcttgaactccgaattccaacatcatccataaaacaaaatgggttcccttgaaacggtgagaaaaacatagacgatccatcaatacag 12734908  T
Q  110 taacagatggctcaacaggtggtacttcaacaaaaccgttgggtggcagcaactgcctgaatgtctctgtagccagaacaagtgataagatcacaaattg 209  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| ||||||||||||    
T  12734909 taacagatggctcaacaggtggtatttcaacaaaaccgttgggtggcaacaactgcctaaatgtctctgtagccagaacaagtgatacgatcacaaattg 12735008  T
Q  210 gttgattgaaatatcattccattcatattcattcatatttcgaatatttcgaatagccaaccagttaatagtgccactcacatacgcaccatgactcgca 309  Q
    ||||| ||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||    
T  12735009 gttgactgaaatatcattccattcatattcattcatatttttaatatttcgaatagccaaccagttaacagtgccacttacatacgcaccatgactcgca 12735108  T
Q  310 aatggatgacaatagaaacggcgacgacagaggccaaaaggaacaacgggaaaagtaggaatatctctccaaacattatcagtcaagcagaaaactttta 409  Q
    |||||||||||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  12735109 aatggatgacaatagaaacggctacgacagagtccaaaaggaacaacgggaaaaggaggaatatctctccaaacattatcagtcaagcagaaaactttta 12735208  T
Q  410 ccttctcgtcctgttctgacgagaaggcaaccaccttataaccatcatttgaaatatcatagccaaatgtataccgaaaaaggttagctgaatacccgaa 509  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  12735209 ccttttcgtcctgttctgacgagaaggcaaccaccttataaccatcatttgaaatatcatagccaaatgtataccgaaaaaggttagttgaatacccgaa 12735308  T
Q  510 tttttcagataatgtatttgtggctgggttccagagacggaaccacatgtctttgtaggtagaggcggcattccaagaagcaccgcgcaaacatatcaat 609  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||| ||||||| ||||||||||  |||||||||||||    
T  12735309 tttttcagataatgtatttgtggctgggttccagagacggaaccacgtgtctttgtagttagcggcagcattcctagaagcaccggacaaacatatcaat 12735408  T
Q  610 ccattacaggaaccaacgatatcacagcaatccatattactcaatcggtaataaggatcattgagaatggtgatatccttcacttgatagtaaagttggt 709  Q
    |||||  |||||||||| ||||  |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||    
T  12735409 ccattgtaggaaccaacaatattgcagcaatctatattactcaatcggtaataaggatcattgagaatggtgatatccttcacatgatagtaaagtcggt 12735508  T
Q  710 agtgtgtcatgaaggacggactctccagcaaacgacttactggaatgggtatgagactgtaatcaaagttgcccttgtctggtactcggaatgatctaag 809  Q
     ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||  ||||||||||||||||||||| ||    
T  12735509 ggtgtgtcatgaaggacggactctccagcaaacgacttacaggaatggatatgagactgtaatcaaagttgccccagtctggtactcggaatgatcttag 12735608  T
Q  810 caaaaggtgggtgttccgaggcgatcgctgaaggtgcagtttagcgaaggaaggatcatgagagattagggttttccatgatttgcagacacatttgaat 909  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  12735609 caaaaggtgggtgttccgaggcgatcgccgaaggtgcagtttagcgaaggaaggatcatgagagattagggttttccatgatttgcaaacacatttgaat 12735708  T
Q  910 tgcatcagagttttcacaggaagtcgtgaaagaatttctacgataagttcatcaagaaggactatcagcgagg-tgtagcgcagcagtttgaaggcggag 1008  Q
    ||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||    
T  12735709 tgcatcaaagttttgacaggaagtcgtgaaagaatttctacgataagttcatcaagaaggactatcagcgaggttgtagcgcagcagtatgaaggcggag 12735808  T
Q  1009 actttgtcgaa 1019  Q
    |||||||||||    
T  12735809 actttgtcgaa 12735819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 124; E-Value: 3e-63
Query Start/End: Original strand, 14 - 321
Target Start/End: Original strand, 32578888 - 32579186
Alignment:
Q  14 tccaagaatcttgaactccgaattccatcatcatccataaaacaaaatgggttcccttgaaacggtgagaaaaacatagacgattcatcaatacagtaac 113  Q
    ||||||| || ||||||||| | |||||||||||||||||||||||||||||  ||||||||||||||||||||||||||| || |||||| ||||||||    
T  32578888 tccaagactcgtgaactccgtactccatcatcatccataaaacaaaatgggtctccttgaaacggtgagaaaaacatagacaatccatcaacacagtaac 32578987  T
Q  114 agatggctcaacaggtggtacttcaacaaaaccgttgggtggcagcaactgcctgaatgtctctgtagccagaacaagtgataagatcacaaattggttg 213  Q
    || ||||||||| ||||||||||||||||| || |  | ||||||||| || | | ||||||| |||| |||| |||||||||| || | |||||| | |    
T  32578988 agctggctcaaccggtggtacttcaacaaatccctgcgatggcagcaaatgtcggtatgtctccgtagtcagatcaagtgataaaatgagaaattgctcg 32579087  T
Q  214 attgaaatatcattccattcatattcattcatatttcgaatatttcgaatagccaaccagttaatagtgccactcacatacgcaccatgactcgcaaatg 313  Q
    |||||||||||||||| |||||||||| ||          ||||||||||||||||||| ||||||||||||||||||||| |||| | | || || |||    
T  32579088 attgaaatatcattcctttcatattcagtc---------ttatttcgaatagccaaccaattaatagtgccactcacatacacaccgttattcacatatg 32579178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 814 - 970
Target Start/End: Original strand, 32579655 - 32579811
Alignment:
Q  814 aggtgggtgttccgaggcgatcgctgaaggtgcagtttagcgaaggaaggatcatgagagattagggttttccatgatttgcagacacatttgaattgca 913  Q
    |||||||||||||| |||||||| ||||| || | ||| ||||||   ||||||| ||| ||||||||||||||||||||||| ||||||||||||||||    
T  32579655 aggtgggtgttccgtggcgatcgatgaagatgaaatttggcgaagacgggatcatcagaaattagggttttccatgatttgcaaacacatttgaattgca 32579754  T
Q  914 tcagagttttcacaggaagtcgtgaaagaatttctacgataagttcatcaagaagga 970  Q
    | |||||||| |||||||| ||||| || ||||| ||||| ||||||||||| ||||    
T  32579755 taagagttttgacaggaaggcgtgataggatttccacgatgagttcatcaaggagga 32579811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 344 - 389
Target Start/End: Original strand, 32579203 - 32579248
Alignment:
Q  344 caaaaggaacaacgggaaaagtaggaatatctctccaaacattatc 389  Q
    ||||||||||||||| |||| | |||||||||||||||||||||||    
T  32579203 caaaaggaacaacggaaaaatttggaatatctctccaaacattatc 32579248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 75
Target Start/End: Original strand, 25901292 - 25901363
Alignment:
Q  4 aacaactgaatccaagaatcttgaactccgaattccatcatcatccataaaacaaaatgggttcccttgaaa 75  Q
    ||||| ||||||||||| ||||||||||  || ||| ||||  |||||| |||||||||| |||||||||||    
T  25901292 aacaattgaatccaagactcttgaactcgaaaatccttcattttccatataacaaaatggcttcccttgaaa 25901363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 75
Target Start/End: Original strand, 25915310 - 25915381
Alignment:
Q  4 aacaactgaatccaagaatcttgaactccgaattccatcatcatccataaaacaaaatgggttcccttgaaa 75  Q
    ||||| ||||||||||| ||||||||||  || ||| ||||  |||||| |||||||||| |||||||||||    
T  25915310 aacaattgaatccaagactcttgaactcgaaaatccttcattttccatataacaaaatggcttcccttgaaa 25915381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0464 (Bit Score: 775; Significance: 0; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 775; E-Value: 0
Query Start/End: Original strand, 10 - 1019
Target Start/End: Complemental strand, 8112 - 7111
Alignment:
Q  10 tgaatccaagaatcttgaactccgaattccatcatcatccataaaacaaaatgggttcccttgaaacggtgagaaaaacatagacgattcatcaatacag 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8112 tgaatccaagaatcttgaactccgaattccatcatcatccataaaacaaaatgggttcccttgaaacggtgagaaaaacatagacgattcatcaatacag 8013  T
Q  110 taacagatggctcaacaggtggtacttcaacaaaaccgttgggtggcagcaactgcctgaatgtctctgtagccagaacaagtgataagatcacaaattg 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||    
T  8012 taacagatggctcaacaggtggtacttcaacaaaaccgttgggtggcagcaactgcctaaatgtctctgtagccagaacaagtgatacgatcacaaattg 7913  T
Q  210 gttgattgaaatatcattccattcatattcattcatatttcgaatatttcgaatagccaaccagttaatagtgccactcacatacgcaccatgactcgca 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||| |||||||||||||||||||||| | ||| ||    
T  7912 gttgattgaaatatcattccattcatattcattcatatttcgaata---------gccaaccagttaacagtgccactcacatacgcaccacggctcaca 7822  T
Q  310 aatggatgacaatagaaacggcgacgacagaggccaaaaggaacaacgggaaaagtaggaatatctctccaaacattatcagtcaagcagaaaactttta 409  Q
    ||||||||||||| |||||| | | |||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7821 aatggatgacaattgaaacgtctatgacagaggtcaaaaggaacaatgggaaaagtaggaatatctctccaaacattatcagtcaagcagaaaactttta 7722  T
Q  410 ccttctcgtcctgttctgacgagaaggcaaccaccttataaccatcatttgaaatatcatagccaaatgtataccgaaaaaggttagctgaatacccgaa 509  Q
     |||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  7721 gcttctcgtcagaaaaggacgagaaggcaaccaccttataaccatcatttgaaatatcatagccaaatgtataccgaaaaaggatagttgaatacccgaa 7622  T
Q  510 tttttcagataatgtatttgtggctgggttccagagacggaaccacatgtctttgtaggtagaggcggcattccaagaagcaccgcgcaaacatatcaat 609  Q
    |||||| ||||||||||||||||||||| ||||||||| |||||||||||||| || | ||| |||||||||||||||||||||| ||||||||||||||    
T  7621 tttttctgataatgtatttgtggctgggatccagagacagaaccacatgtcttcgtcgttagcggcggcattccaagaagcaccgtgcaaacatatcaat 7522  T
Q  610 ccattacaggaaccaacgatatcacagcaatccatattactcaatcggtaataaggatcattgagaatggtgatatccttcacttgatagtaaagttggt 709  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||    
T  7521 ccattacaggaaccaacgatattacagcaatccatattactcaatcggtaataaggataattgagaatggtgatatccttcacttgatagtaaacttggt 7422  T
Q  710 agtgtgtcatgaaggacggactctccagcaaacgacttactggaatgggtatgagactgtaatcaaagttgcccttgtctggtactcggaatgatctaag 809  Q
    ||| |||||  || |||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||  | ||||| |||||||| |||| ||    
T  7421 agtctgtcacaaaagacggactctccagcaaacgacttacaggaatggatatgagactgtaatcaaagttgccccagcctggttctcggaataatcttag 7322  T
Q  810 caaaaggtgggtgttccgaggcgatcgctgaaggtgcagtttagcgaaggaaggatcatgagagattagggttttccatgatttgcagacacatttgaat 909  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7321 caaaaggtgggtgttccgaggcgatcgctgaaggtgcagtttagcgaaggaaggatcatgagagattagggttttccatgatttgcagacacatttgaat 7222  T
Q  910 tgcatcagagttttcacaggaagtcgtgaaagaatttctacgataagttcatcaagaaggactatcagcga-ggtgtagcgcagcagtttgaaggcggag 1008  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | |||||||||||||||||| |||||||    
T  7221 tgcatcagagttttgacaggaagtcgtgaaagaatttctacgataagttcgtcaagaaggactatcagcgacgttgtagcgcagcagtttgatggcggag 7122  T
Q  1009 actttgtcgaa 1019  Q
    |||||||||||    
T  7121 actttgtcgaa 7111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 120; Significance: 7e-61; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 120; E-Value: 7e-61
Query Start/End: Original strand, 14 - 294
Target Start/End: Complemental strand, 19357957 - 19357683
Alignment:
Q  14 tccaagaatcttgaactccgaattccatcatcatccataaaacaaaatgggttcccttgaaacggtgagaaaaacatagacgattcatcaatacagtaac 113  Q
    ||||||| ||||||||||| |||||||||||| |||||||||| |||||||| || ||||||  ||||||||||||||||| || |||||||||||| ||    
T  19357957 tccaagactcttgaactccaaattccatcatcttccataaaacgaaatgggtccctttgaaatagtgagaaaaacatagactatccatcaatacagttac 19357858  T
Q  114 agatggctcaacaggtggtacttcaacaaaaccgttgggtggcagcaactgcctgaatgtctctgtagccagaacaagtgataagatcacaaattggttg 213  Q
    | |||||| || |||||||||||||||||||||| | |||||||||||||||||  ||||||| || |||||| ||||||| | |||||||||||| |      
T  19357857 aaatggctgaataggtggtacttcaacaaaaccgctaggtggcagcaactgcctatatgtctccgtggccagatcaagtgagacgatcacaaattgatca 19357758  T
Q  214 attgaaatatcattccattcatattcattcatatttcgaatatttcgaatagccaaccagttaatagtgccactcacatac 294  Q
    |||| |||||||  ||||||||||| | |||    ||  |||||||||||||||||||||||||||||||| |||||||||    
T  19357757 attgtaatatcacgccattcatattga-tca---gtc--atatttcgaatagccaaccagttaatagtgcctctcacatac 19357683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 96; E-Value: 2e-46
Query Start/End: Original strand, 14 - 321
Target Start/End: Complemental strand, 19779649 - 19779351
Alignment:
Q  14 tccaagaatcttgaactccgaattccatcatcatccataaaacaaaatgggttcccttgaaacggtgagaaaaacatagacgattcatcaatacagtaac 113  Q
    ||||||| |||||||||||| | |||||||||| ||||||||||||||||||  ||||| ||||||||||||||||||||| || |||||||||||||||    
T  19779649 tccaagagtcttgaactccgtactccatcatcaaccataaaacaaaatgggtctccttggaacggtgagaaaaacatagacaatccatcaatacagtaac 19779550  T
Q  114 agatggctcaacaggtggtacttcaacaaaaccgttgggtggcagcaactgcctgaatgtctctgtagccagaacaagtgataagatcacaaattggttg 213  Q
    || ||| |||||||||||||| |||||||| || |  |||||| |||| ||   | | ||||| |||| |||| ||||||| | ||| | |||||| |      
T  19779549 agctggatcaacaggtggtacatcaacaaatccctgaggtggccgcaaatgttggtacgtctcggtagtcagatcaagtgagaggatgagaaattgatca 19779450  T
Q  214 attgaaatatcattccattcatattcattcatatttcgaatatttcgaatagccaaccagttaatagtgccactcacatacgcaccatgactcgcaaatg 313  Q
    ||||||||||||||||| ||||||||  ||          ||||| |||||| |||||||||||||||||||||||||||  |||||| | || || |||    
T  19779449 attgaaatatcattccactcatattcggtc---------ttattttgaatagtcaaccagttaatagtgccactcacataaacaccattattcacatatg 19779359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 96; E-Value: 2e-46
Query Start/End: Original strand, 14 - 321
Target Start/End: Original strand, 19887734 - 19888032
Alignment:
Q  14 tccaagaatcttgaactccgaattccatcatcatccataaaacaaaatgggttcccttgaaacggtgagaaaaacatagacgattcatcaatacagtaac 113  Q
    ||||||| |||||||||||| | |||||||||| ||||||||||||||||||  ||||| ||||||||||||||||||||| || |||||||||||||||    
T  19887734 tccaagagtcttgaactccgtactccatcatcaaccataaaacaaaatgggtctccttggaacggtgagaaaaacatagacaatccatcaatacagtaac 19887833  T
Q  114 agatggctcaacaggtggtacttcaacaaaaccgttgggtggcagcaactgcctgaatgtctctgtagccagaacaagtgataagatcacaaattggttg 213  Q
    || ||| |||||||||||||| |||||||| || |  |||||| |||| ||   | | ||||| |||| |||| ||||||| | ||| | |||||| |      
T  19887834 agctggatcaacaggtggtacatcaacaaatccctgaggtggccgcaaatgttggtacgtctcggtagtcagatcaagtgagaggatgagaaattgatca 19887933  T
Q  214 attgaaatatcattccattcatattcattcatatttcgaatatttcgaatagccaaccagttaatagtgccactcacatacgcaccatgactcgcaaatg 313  Q
    ||||||||||||||||| ||||||||  ||          ||||| |||||| |||||||||||||||||||||||||||  |||||| | || || |||    
T  19887934 attgaaatatcattccactcatattcggtc---------ttattttgaatagtcaaccagttaatagtgccactcacataaacaccattattcacatatg 19888024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 93; E-Value: 1e-44
Query Start/End: Original strand, 814 - 970
Target Start/End: Original strand, 19888504 - 19888660
Alignment:
Q  814 aggtgggtgttccgaggcgatcgctgaaggtgcagtttagcgaaggaaggatcatgagagattagggttttccatgatttgcagacacatttgaattgca 913  Q
    ||||| |||||||| ||||| |||||||| || ||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  19888504 aggtgtgtgttccgcggcgaacgctgaagatggagtttggcgaaggaaggatcatgagaaattagggttttccatgatttgcaaacacatttgaattgca 19888603  T
Q  914 tcagagttttcacaggaagtcgtgaaagaatttctacgataagttcatcaagaagga 970  Q
    | |||||||| |||||||||||||| || || || ||||| ||||||||||| ||||    
T  19888604 taagagttttgacaggaagtcgtgacaggatatccacgatgagttcatcaaggagga 19888660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 814 - 970
Target Start/End: Complemental strand, 19778879 - 19778723
Alignment:
Q  814 aggtgggtgttccgaggcgatcgctgaaggtgcagtttagcgaaggaaggatcatgagagattagggttttccatgatttgcagacacatttgaattgca 913  Q
    ||||| ||||||||  ||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||    
T  19778879 aggtgtgtgttccgctgcgatcgctgaagatgcagtttggcgaaggaaggatcatgagaaattagggttttccaagatttgcaaacacatttgaattgca 19778780  T
Q  914 tcagagttttcacaggaagtcgtgaaagaatttctacgataagttcatcaagaagga 970  Q
    | |||||||| |||||||||||||| || || |||  ||| ||||||||||| ||||    
T  19778779 taagagttttgacaggaagtcgtgacaggatgtctgtgatgagttcatcaaggagga 19778723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 14 - 301
Target Start/End: Original strand, 19351092 - 19351370
Alignment:
Q  14 tccaagaatcttgaactccgaattccatcatcatccataaaacaaaatgggttcccttgaaacggtgagaaaaacatagacgattcatcaatacagtaac 113  Q
    ||||||| || | |||||| ||||||||||||  |||||||||||||||||| |  |||| |  ||||||||||||||||| || |||||||||||||||    
T  19351092 tccaagactcctcaactccaaattccatcatctgccataaaacaaaatgggtccttttgagattgtgagaaaaacatagacaatccatcaatacagtaac 19351191  T
Q  114 agatggctcaacaggtggtacttcaacaaaaccgttgggtggcagcaactgcctga-atgtctctgtagccagaacaagtgataagatcacaaattggtt 212  Q
     ||||||||| ||||||||||||||||||||||    |||||||  |||||  ||| ||||||| ||| ||||| ||||||| |  ||||||||||| |     
T  19351192 ggatggctcagcaggtggtacttcaacaaaaccacgaggtggcaaaaactg-ttgatatgtctccgtacccagatcaagtgaaataatcacaaattgctc 19351290  T
Q  213 gattgaaatatcattccattcatattcattcatatttcgaatatttcgaatagccaaccagttaatagtgccactcacatacgcaccat 301  Q
    ||||  |||||||||||||| ||||| | |         ||||||| |||||||||||||||||||||  |||||||||||| ||||||    
T  19351291 gattctaatatcattccatttatatttagt---------aatattttgaatagccaaccagttaatagatccactcacatacacaccat 19351370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 14 - 322
Target Start/End: Complemental strand, 19722065 - 19721769
Alignment:
Q  14 tccaagaatcttgaactccgaattccatcatcatccataaaacaaaatgggttcccttgaaacggtgagaaaaacatagacgattcatcaatacagtaac 113  Q
    ||||||||||||||||||| |||||||||||| |||||||||||||||     ||||  |||| |||||||||||||||||  | |||||||||||||||    
T  19722065 tccaagaatcttgaactccaaattccatcatcttccataaaacaaaataa---ccctgaaaactgtgagaaaaacatagacagtccatcaatacagtaac 19721969  T
Q  114 agatggctcaacaggtggtacttcaacaaaaccgttgggtggcagcaactgcctga-atgtctctgtagccagaacaagtgataagatcacaaattggtt 212  Q
    ||| |||||||||| ||||||||||||||| || |  ||||||| || |||  ||| ||||||| ||||||||| |||| || |  || |||||||| |     
T  19721968 agacggctcaacagttggtacttcaacaaacccctcaggtggcaacagctg-ttgatatgtctccgtagccagatcaagcgagacaattacaaattgctc 19721870  T
Q  213 gattgaaatatcattccattcatattcattcatatttcgaatatttcgaatagccaaccagttaatagtgccactcacatacgcaccatgactcgcaaat 312  Q
    || | |||||||| |||||| ||| ||| ||          | ||||||||||||||||||||||||||||| ||||||||  |||||| | || |||||    
T  19721869 gactaaaatatcagtccattgatactcagtc---------gtgtttcgaatagccaaccagttaatagtgccgctcacataaacaccattattcacaaat 19721779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 814 - 932
Target Start/End: Original strand, 19351793 - 19351911
Alignment:
Q  814 aggtgggtgttccgaggcgatcgctgaaggtgcagtttagcgaaggaaggatcatgagagattagggttttccatgatttgcagacacatttgaattgca 913  Q
    ||||||||||||||  |||| || | |||||||| ||| | |||||||||||||||||| || |||||| |||||||||| || ||||||||||||||||    
T  19351793 aggtgggtgttccgtcgcgaccggtaaaggtgcaatttggtgaaggaaggatcatgagaaatcagggttgtccatgatttacaaacacatttgaattgca 19351892  T
Q  914 tcagagttttcacaggaag 932  Q
    | |||||||| ||||||||    
T  19351893 taagagttttgacaggaag 19351911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 838 - 964
Target Start/End: Complemental strand, 19357181 - 19357055
Alignment:
Q  838 tgaaggtgcagtttagcgaaggaaggatcatgagagattagggttttccatgatttgcagacacatttgaattgcatcagagttttcacaggaagtcgtg 937  Q
    |||||||||| ||| | |||||||| ||||||||| || |||||||||||||||||||| || ||||||||||||||||||||||| || ||||| || |    
T  19357181 tgaaggtgcaatttggtgaaggaagaatcatgagaaataagggttttccatgatttgcaaacgcatttgaattgcatcagagttttgacgggaagccgcg 19357082  T
Q  938 aaagaatttctacgataagttcatcaa 964  Q
    | ||||||||   ||| ||||||||||    
T  19357081 atagaatttcagtgatgagttcatcaa 19357055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 439 - 554
Target Start/End: Original strand, 19351469 - 19351584
Alignment:
Q  439 accaccttataaccatcatttgaaatatcatagccaaatgtataccgaaaaaggttagctgaatacccgaatttttcagataatgtatttgtggctgggt 538  Q
    ||||||||||||   ||||||||||||||||||||||||||  ||  |||||  |||| ||||||||| | ||||||||||||||| |||||||||||||    
T  19351469 accaccttataagtgtcatttgaaatatcatagccaaatgttaacttaaaaaatttagttgaataccctattttttcagataatgtctttgtggctgggt 19351568  T
Q  539 tccagagacggaacca 554  Q
    |||||| ||| |||||    
T  19351569 tccagaaacgtaacca 19351584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 874 - 965
Target Start/End: Original strand, 19879702 - 19879793
Alignment:
Q  874 attagggttttccatgatttgcagacacatttgaattgcatcagagttttcacaggaagtcgtgaaagaatttctacgataagttcatcaag 965  Q
    |||||||||||||| |||||||| ||||||||||||||||| |||||||| ||||||||||||||||| || |||  ||| |||||||||||    
T  19879702 attagggttttccaagatttgcaaacacatttgaattgcataagagttttgacaggaagtcgtgaaaggatgtctgtgatgagttcatcaag 19879793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 870 - 948
Target Start/End: Complemental strand, 19721275 - 19721197
Alignment:
Q  870 agagattagggttttccatgatttgcagacacatttgaattgcatcagagttttcacaggaagtcgtgaaagaatttct 948  Q
    |||||||||||||||| ||||||||||||||||||| | ||||||||||||||| | |||||| ||||| || ||||||    
T  19721275 agagattagggttttcaatgatttgcagacacatttcatttgcatcagagttttgaaaggaaggcgtgataggatttct 19721197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 867 - 963
Target Start/End: Original strand, 19598578 - 19598674
Alignment:
Q  867 atgagagattagggttttccatgatttgcagacacatttgaattgcatcagagttttcacaggaagtcgtgaaagaatttctacgataagttcatca 963  Q
    |||||||||||||||||||||||| |||||||| |||||||||||||  ||||  || ||||||||   ||| || ||||| |||||||||||||||    
T  19598578 atgagagattagggttttccatgacttgcagacgcatttgaattgcacaagagaatttacaggaaggaatgataggatttcaacgataagttcatca 19598674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 343 - 390
Target Start/End: Complemental strand, 19357634 - 19357587
Alignment:
Q  343 ccaaaaggaacaacgggaaaagtaggaatatctctccaaacattatca 390  Q
    ||||||||||||| ||||||||| ||||||||||||||| ||||||||    
T  19357634 ccaaaaggaacaatgggaaaagttggaatatctctccaagcattatca 19357587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 344 - 412
Target Start/End: Complemental strand, 19779334 - 19779266
Alignment:
Q  344 caaaaggaacaacgggaaaagtaggaatatctctccaaacattatcagtcaagcagaaaacttttacct 412  Q
    |||||||||||| ||||||| | |||||||||||||||| ||||||| |||| | ||||| ||| ||||    
T  19779334 caaaaggaacaatgggaaaacttggaatatctctccaaatattatcactcaaactgaaaattttgacct 19779266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 344 - 395
Target Start/End: Original strand, 19888049 - 19888100
Alignment:
Q  344 caaaaggaacaacgggaaaagtaggaatatctctccaaacattatcagtcaa 395  Q
    |||||||||||| ||||||| | |||||||||||||||| ||||||| ||||    
T  19888049 caaaaggaacaatgggaaaattcggaatatctctccaaatattatcactcaa 19888100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 294
Target Start/End: Original strand, 18953167 - 18953205
Alignment:
Q  256 tttcgaatagccaaccagttaatagtgccactcacatac 294  Q
    |||||||| ||||||||||||| ||||||||||||||||    
T  18953167 tttcgaatggccaaccagttaacagtgccactcacatac 18953205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 294
Target Start/End: Original strand, 18983214 - 18983252
Alignment:
Q  256 tttcgaatagccaaccagttaatagtgccactcacatac 294  Q
    |||||||| ||||||||||||| ||||||||||||||||    
T  18983214 tttcgaatggccaaccagttaacagtgccactcacatac 18983252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 110; Significance: 7e-55; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 110; E-Value: 7e-55
Query Start/End: Original strand, 14 - 299
Target Start/End: Original strand, 18908832 - 18909108
Alignment:
Q  14 tccaagaatcttgaactccgaattccatcatcatccataaaacaaaatgggttcccttgaaacggtgagaaaaacatagacgattcatcaatacagtaac 113  Q
    ||||||| ||||||||||| |||||||||||| |||||| ||||||||||||| |  | |||||||||||||||||||||| || |||||| ||| ||||    
T  18908832 tccaagactcttgaactccaaattccatcatcttccatataacaaaatgggtttctctaaaacggtgagaaaaacatagacaatccatcaacacactaac 18908931  T
Q  114 agatggctcaacaggtggtacttcaacaaaaccgttgggtggcagcaactgcctgaatgtctctgtagccagaacaagtgataagatcacaaattggttg 213  Q
    ||| || ||||||||||||||||||||||||||| | ||||||||||| ||||   ||||||||||| ||| | |||| || |  ||||||||||| |||    
T  18908932 agacggttcaacaggtggtacttcaacaaaaccgctaggtggcagcaattgccgatatgtctctgtatccaaatcaagcgagactatcacaaattgtttg 18909031  T
Q  214 attgaaatatcattccattcatattcattcatatttcgaatatttcgaatagccaaccagttaatagtgccactcacatacgcacc 299  Q
    || | |||||||||||||||||||||| || ||| ||||         |||||||||||||||||||  |||||||||||| ||||    
T  18909032 atagtaatatcattccattcatattcagtcttatctcga---------atagccaaccagttaatagaaccactcacatacacacc 18909108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 104; E-Value: 3e-51
Query Start/End: Original strand, 14 - 253
Target Start/End: Original strand, 18920788 - 18921027
Alignment:
Q  14 tccaagaatcttgaactccgaattccatcatcatccataaaacaaaatgggttcccttgaaacggtgagaaaaacatagacgattcatcaatacagtaac 113  Q
    ||||||| ||||||||||| |||||||||||| |||||| ||||||||||||| |  | ||||||||||||||||||| || || |||||| ||| ||||    
T  18920788 tccaagactcttgaactccaaattccatcatcttccatataacaaaatgggtttctctaaaacggtgagaaaaacatatacaatccatcaacacactaac 18920887  T
Q  114 agatggctcaacaggtggtacttcaacaaaaccgttgggtggcagcaactgcctgaatgtctctgtagccagaacaagtgataagatcacaaattggttg 213  Q
    ||| || ||||||||||||||||||||||||||| | ||||||||||| ||||   ||||||||||| ||| | |||| || |  ||||||||||| |||    
T  18920888 agacggttcaacaggtggtacttcaacaaaaccgctaggtggcagcaattgccgatatgtctctgtaaccaaatcaagcgagactatcacaaattgtttg 18920987  T
Q  214 attgaaatatcattccattcatattcattcatatttcgaa 253  Q
    || | |||||||||||||||||||||| || ||| |||||    
T  18920988 atagtaatatcattccattcatattcagtcttatctcgaa 18921027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 95; E-Value: 6e-46
Query Start/End: Original strand, 14 - 232
Target Start/End: Original strand, 18913580 - 18913798
Alignment:
Q  14 tccaagaatcttgaactccgaattccatcatcatccataaaacaaaatgggttcccttgaaacggtgagaaaaacatagacgattcatcaatacagtaac 113  Q
    ||||||| ||||||||||| |||||||||||| |||||| |||||||||||||||| |||||||||||||||||||||||| || |||||| ||| ||||    
T  18913580 tccaagactcttgaactccaaattccatcatcttccatataacaaaatgggttcccctgaaacggtgagaaaaacatagacaatccatcaacacactaac 18913679  T
Q  114 agatggctcaacaggtggtacttcaacaaaaccgttgggtggcagcaactgcctgaatgtctctgtagccagaacaagtgataagatcacaaattggttg 213  Q
    ||| || ||||| |||||| |||||||||||||| | ||||||| ||||||   | ||||||||||||||| | |||| || |  ||||||||||| |      
T  18913680 agacggttcaacgggtggtgcttcaacaaaaccgctaggtggcaacaactgttggtatgtctctgtagccaaatcaagcgagactatcacaaattgttca 18913779  T
Q  214 attgaaatatcattccatt 232  Q
    || | ||||||||||||||    
T  18913780 atggtaatatcattccatt 18913798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 817 - 980
Target Start/End: Original strand, 18909593 - 18909753
Alignment:
Q  817 tgggtgttccgaggcgatcgctgaaggtgcagtttagcgaaggaaggatcatgagagattagggttttccatgatttgcagacacatttgaattgcatca 916  Q
    ||||||||||| || ||||| |||||||||| ||| |||||| ||||||   |||| |||||||||||| |||||||||| || ||||| | ||||||||    
T  18909593 tgggtgttccgtggtgatcggtgaaggtgcaatttggcgaagaaaggat---gagaaattagggttttcaatgatttgcaaacgcatttcatttgcatca 18909689  T
Q  917 gagttttcacaggaagtcgtgaaagaatttctacgataagttcatcaagaaggactatcagcga 980  Q
    ||||||| ||||||||||||||||| |||||| |||| ||||| |||||||||| || ||||||    
T  18909690 gagttttgacaggaagtcgtgaaaggatttctgcgatgagttcgtcaagaaggattaacagcga 18909753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 819 - 1014
Target Start/End: Original strand, 18914343 - 18914536
Alignment:
Q  819 ggtgttccgaggcgatcgctgaaggtgcagtttagcgaaggaaggatcatgagagattagggttttccatgatttgcagacacatttgaattgcatcaga 918  Q
    |||||| || || ||||| |||||||||| |||  ||||||||||||   |||| |||||||||||| |||||||||| || ||||| | ||||||||||    
T  18914343 ggtgtttcgtggtgatcgatgaaggtgcaatttgacgaaggaaggat---gagaaattagggttttcaatgatttgcaaacgcatttcatttgcatcaga 18914439  T
Q  919 gttttcacaggaagtcgtgaaagaatttctacgataagttcatcaagaaggactatcagcga-ggtgtagcgcagcagtttgaaggcggagactttg 1014  Q
    ||||| ||||||||||| ||||| |||||| | ||||||||||||||||||| || |||||| | || | |||||  ||||||| ||||||||||||    
T  18914440 gttttgacaggaagtcgagaaaggatttctgcaataagttcatcaagaaggattaacagcgacgttggaacgcagttgtttgaatgcggagactttg 18914536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 816 - 980
Target Start/End: Original strand, 18921488 - 18921649
Alignment:
Q  816 gtgggtgttccgaggcgatcgctgaaggtgcagtttagcgaaggaaggatcatgagagattagggttttccatgatttgcagacacatttgaattgcatc 915  Q
    |||||||||||| |||||||| |||||||||| |||  ||||||||||||   |||| |||||||||||| |||||||||| || ||||| | |||||||    
T  18921488 gtgggtgttccgcggcgatcgatgaaggtgcattttgacgaaggaaggat---gagaaattagggttttcaatgatttgcaaacgcatttcatttgcatc 18921584  T
Q  916 agagttttcacaggaagtcgtgaaagaatttctacgataagttcatcaagaaggactatcagcga 980  Q
    |||||||| || ||||| |||||||| |||||| |||| || ||||||||||||| || ||||||    
T  18921585 agagtttttactggaagacgtgaaaggatttctgcgatgagctcatcaagaaggattaacagcga 18921649  T

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Target: chr2; HSP #7
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 595 - 679
Target Start/End: Original strand, 18914119 - 18914203
Alignment:
Q  595 cgcaaacatatcaatccattacaggaaccaacgatatcacagcaatccatattactcaatcggtaataaggatcattgagaatgg 679  Q
    |||||||| ||||||||||| ||||||||||| || | | | |||||||||||||||||  ||||||||||||||||| ||||||    
T  18914119 cgcaaacaaatcaatccattgcaggaaccaactatttgataacaatccatattactcaaaaggtaataaggatcattgtgaatgg 18914203  T

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Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 595 - 667
Target Start/End: Original strand, 18921309 - 18921381
Alignment:
Q  595 cgcaaacatatcaatccattacaggaaccaacgatatcacagcaatccatattactcaatcggtaataaggat 667  Q
    |||||||| ||||||||||| |||||||||| || || |  ||||||||||||||||||  ||||||||||||    
T  18921309 cgcaaacaaatcaatccattgcaggaaccaatgacatgatcgcaatccatattactcaaaaggtaataaggat 18921381  T

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Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 63
Target Start/End: Complemental strand, 25377125 - 25377072
Alignment:
Q  10 tgaatccaagaatcttgaactccgaattccatcatcatccataaaacaaaatgg 63  Q
    ||||||||||| ||||||||||| || ||| |||||||||||| ||||||||||    
T  25377125 tgaatccaagactcttgaactccaaaatccttcatcatccatataacaaaatgg 25377072  T

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Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 511 - 554
Target Start/End: Original strand, 18914050 - 18914093
Alignment:
Q  511 ttttcagataatgtatttgtggctgggttccagagacggaacca 554  Q
    ||||||||||||| |||||||||||||||||| | |||||||||    
T  18914050 ttttcagataatgaatttgtggctgggttccataaacggaacca 18914093  T

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Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 604 - 677
Target Start/End: Original strand, 18909386 - 18909459
Alignment:
Q  604 atcaatccattacaggaaccaacgatatcacagcaatccatattactcaatcggtaataaggatcattgagaat 677  Q
    |||||||||||||| |||||||| || | |  |||||||||||||| ||||  |||| ||||||||||| ||||    
T  18909386 atcaatccattacaagaaccaacaatgtgattgcaatccatattacgcaatatgtaacaaggatcattgggaat 18909459  T

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Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 299
Target Start/End: Original strand, 18913815 - 18913856
Alignment:
Q  258 tcgaatagccaaccagttaatagtgccactcacatacgcacc 299  Q
    ||||||||||||||||||||| || |||||||||||| ||||    
T  18913815 tcgaatagccaaccagttaattgttccactcacatacacacc 18913856  T

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Target: chr6 (Bit Score: 89; Significance: 2e-42; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 14 - 294
Target Start/End: Complemental strand, 14749444 - 14749173
Alignment:
Q  14 tccaagaatcttgaactccgaattccatcatcatccataaaacaaaatgggttcccttgaaacggtgagaaaaacatagacgattcatcaatacagtaac 113  Q
    ||||||| ||||||||||| |||||||||||| |||||||||||||||||||  | ||||||||||||||||||||||||| || |||||| |  |||||    
T  14749444 tccaagactcttgaactccaaattccatcatcctccataaaacaaaatgggtctctttgaaacggtgagaaaaacatagacaatccatcaaaatggtaac 14749345  T
Q  114 agatggctcaacaggtggtacttcaacaaaaccgttgggtggcagcaactgcctgaatgtctctgtagccagaacaagtgataagatcacaaattggttg 213  Q
    |||||||||||||| ||||||||||||||| || |  |||||||  ||  | | | ||||||| ||||  ||| ||||||| |  || | |||||||| |    
T  14749344 agatggctcaacagatggtacttcaacaaatccctgaggtggcaagaaacgacggtatgtctccgtagttagatcaagtgaaacaatgagaaattggtcg 14749245  T
Q  214 attgaaatatcattccattcatattcattcatatttcgaatatttcgaatagccaaccagttaatagtgccactcacatac 294  Q
    ||||||||||||||| | ||||||||  ||          ||||| |||||||||||||||||||| ||||||||||||||    
T  14749244 attgaaatatcattctaatcatattcggtc---------ttattttgaatagccaaccagttaatactgccactcacatac 14749173  T

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Target: chr6; HSP #2
Raw Score: 78; E-Value: 9e-36
Query Start/End: Original strand, 830 - 970
Target Start/End: Complemental strand, 14748657 - 14748518
Alignment:
Q  830 gcgatcgctgaaggtgcagtttagcgaaggaaggatcatgagagattagggttttccatgatttgcagacacatttgaattgcatcagagttttcacagg 929  Q
    ||||||||||||| |||| ||| || ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||    
T  14748657 gcgatcgctgaagatgca-tttggcaaaggaaggatcatgagaaattagggttttccatgatttgcaaacacatttgaattgcataagagttttgacagg 14748559  T
Q  930 aagtcgtga-aagaatttctacgataagttcatcaagaagga 970  Q
     |||||||| ||||||| | ||||||||||||||||| ||||    
T  14748558 gagtcgtgacaagaattcc-acgataagttcatcaaggagga 14748518  T

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Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 344 - 412
Target Start/End: Complemental strand, 14749126 - 14749057
Alignment:
Q  344 caaaaggaacaacgggaaaagtaggaatatctct-ccaaacattatcagtcaagcagaaaacttttacct 412  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||| | || | ||||||||| ||||    
T  14749126 caaaaggaacaacgggaaaagtaggaatatctctcccaaacattatcacttaaactgaaaactttgacct 14749057  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 598 - 679
Target Start/End: Complemental strand, 14748886 - 14748805
Alignment:
Q  598 aaacatatcaatccattacaggaaccaacgatatcacagcaatccatattactcaatcggtaataaggatcattgagaatgg 679  Q
    ||||| ||||||||||| ||||||||||| ||   || ||||||||||||||||||  |||| |||||||| ||| ||||||    
T  14748886 aaacagatcaatccattgcaggaaccaaccatgaaactgcaatccatattactcaaaaggtagtaaggatcgttgggaatgg 14748805  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 89
Target Start/End: Complemental strand, 33576224 - 33576142
Alignment:
Q  7 aactgaatccaagaatcttgaactccgaattccatcatcatccataaaacaaaatgggttcccttgaaacggtgagaaaaaca 89  Q
    |||||| ||||||| ||||||||||| || ||| |||||||||||| |||||| |  |||||||| |||  ||| ||||||||    
T  33576224 aactgagtccaagactcttgaactccaaactccttcatcatccatataacaaattcagttcccttaaaatcgtgcgaaaaaca 33576142  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 870 - 911
Target Start/End: Complemental strand, 42693706 - 42693665
Alignment:
Q  870 agagattagggttttccatgatttgcagacacatttgaattg 911  Q
    ||||||||| ||||||||||||||||||||||||||||||||    
T  42693706 agagattagagttttccatgatttgcagacacatttgaattg 42693665  T

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Target: chr4 (Bit Score: 34; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 75
Target Start/End: Original strand, 10553561 - 10553630
Alignment:
Q  6 caactgaatccaagaatcttgaactccgaattccatcatcatccataaaacaaaatgggttcccttgaaa 75  Q
    ||||||||||||||| ||||||||||| || ||  ||||  |||||||||||| |||| |||||||||||    
T  10553561 caactgaatccaagactcttgaactccaaaatctgtcattttccataaaacaagatggcttcccttgaaa 10553630  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 75
Target Start/End: Original strand, 10571289 - 10571360
Alignment:
Q  4 aacaactgaatccaagaatcttgaactccgaattccatcatcatccataaaacaaaatgggttcccttgaaa 75  Q
    ||||||||||||||||| ||||||||||| || ||  ||||  |||||||||||| |||  |||||||||||    
T  10571289 aacaactgaatccaagactcttgaactccaaaatctgtcattttccataaaacaagatgacttcccttgaaa 10571360  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 871 - 934
Target Start/End: Original strand, 43986909 - 43986972
Alignment:
Q  871 gagattagggttttccatgatttgcagacacatttgaattgcatcagagttttcacaggaagtc 934  Q
    |||||||||||||||||||||||||| |  ||||||||||| | ||| | |||||| |||||||    
T  43986909 gagattagggttttccatgatttgcaaatgcatttgaattgaagcagggatttcaccggaagtc 43986972  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 870 - 911
Target Start/End: Complemental strand, 43907725 - 43907684
Alignment:
Q  870 agagattagggttttccatgatttgcagacacatttgaattg 911  Q
    ||||||||||||||||||||||||||| ||||| ||| ||||    
T  43907725 agagattagggttttccatgatttgcaaacacacttgtattg 43907684  T

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Target: chr5 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 596 - 626
Target Start/End: Original strand, 28764495 - 28764525
Alignment:
Q  596 gcaaacatatcaatccattacaggaaccaac 626  Q
    |||||||||||||||||||||||||||||||    
T  28764495 gcaaacatatcaatccattacaggaaccaac 28764525  T

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