View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5056-Insertion-2 (Length: 1040)
Name: NF5056-Insertion-2
Description: NF5056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5056-Insertion-2 |
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Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-129; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-129
Query Start/End: Original strand, 447 - 728
Target Start/End: Complemental strand, 49568386 - 49568104
Alignment:
| Q |
447 |
atcacatcttcaaggaatccatgtgagcacaatcaatttgattccactcttttatgggtgttt-attttgaggactcttcttctcctttcattcattggc |
545 |
Q |
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| T |
49568386 |
atcacatcttcaaggaatgcatgtgagcacaatcaatttgattccactcttttatgggtgttttattttgaggactcttcttctcctttcattcattggc |
49568287 |
T |
|
| Q |
546 |
ttgctgatatcgtatttaatccacatgaataacaagtaaaattgtcctttgtaagaatcatataatttagtaataaacaactagataatgaaaccttcat |
645 |
Q |
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| T |
49568286 |
ttgctgacatcgtatttaatccacatgaataacaagtaaaattgtcctttgtaggaatcatatcattcagtaacaaacaactaaataatgaaaccttcat |
49568187 |
T |
|
| Q |
646 |
aggaacatatttaatccacataacatttgatacatttgtgtcgtgaacatgttcgtcattagataacatgtgataaattccac |
728 |
Q |
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| T |
49568186 |
aggaacatatttaatccacacaacatttgatacatttgtgtcgtcaacatgctcgtcattagataacatgtgataaattccac |
49568104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 215; E-Value: 1e-117
Query Start/End: Original strand, 8 - 230
Target Start/End: Complemental strand, 49569187 - 49568965
Alignment:
| Q |
8 |
acagctcctatctatcttatcatgtaattgcttgtaatgagacgtcccttttttgtaagaggtaatgagatatccttgacttatcacatctcattttccc |
107 |
Q |
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| T |
49569187 |
acagctcctatctatcttatcatgtaattgcttgtaatgagacgtcccttttttgtaagaggtaatgagatctccttgacttatcacatctcattttccc |
49569088 |
T |
|
| Q |
108 |
catattcattaataaatgggttgagattatccttgttcagtgtcaaactagctagctagatgtaaagccaaagccactaggattgatctattggtgaggg |
207 |
Q |
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| T |
49569087 |
cttattcattaataaatgggttgagattatccttgttcagtgtcaaactagctagctagatgtaaagccaaagccactaggattgatctattggtgaggg |
49568988 |
T |
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| Q |
208 |
atttgggtacaccgaaacaattt |
230 |
Q |
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| T |
49568987 |
atttgggtacaccgaaacaattt |
49568965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 137; E-Value: 5e-71
Query Start/End: Original strand, 239 - 379
Target Start/End: Complemental strand, 49568525 - 49568385
Alignment:
| Q |
239 |
ttatcaacatcgtatgcatgcagcctcaaatgagcgagtgaccgcggccaacaagaaatcatctgcatcgctaataaaactattccaataccccatatat |
338 |
Q |
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| T |
49568525 |
ttatcaacatcgtatgcatgcagcctcaaatgagcgagtgaccgcggccaacaagaaatcatctgcatcgctaataaaactattccaataccccatatat |
49568426 |
T |
|
| Q |
339 |
tattcatcgaataacaacatcaatgttaaacttataataat |
379 |
Q |
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| T |
49568425 |
tattcatcgaacaacaacatcaatgttaaacttataataat |
49568385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 119; E-Value: 3e-60
Query Start/End: Original strand, 723 - 1029
Target Start/End: Complemental strand, 49568007 - 49567721
Alignment:
| Q |
723 |
ttccacccttcgtatcaacatgctagctaatagttaactattgatatcagctaccaacagtaaatggtcacgcaaaaggagcacactccaaccaaaggat |
822 |
Q |
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| T |
49568007 |
ttccacccttcatatcaacatgcta----atagttaactattcatatcagctaccaacagtaaatgatcacgcaaaaggaccacactccaaccaaaggat |
49567912 |
T |
|
| Q |
823 |
caatnnnnnnnnnngagtattaaccccattacctacaaccctactaaactatcatcaact-aaagacattcatctatagtaca-cataatgaatgcctca |
920 |
Q |
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| T |
49567911 |
caat-aaaaaaaaagagtattaacctgattacctacaaccctactaaattatcatcaactaaaagacattcatctatagtacagcat-atgaatgcctca |
49567814 |
T |
|
| Q |
921 |
tattgccgcgcatcttagctctgacaagtgatgataaatcaactcgcga-catactttatcattcattcaagtaccaaatacatgtcatcgatgctgaa- |
1018 |
Q |
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| T |
49567813 |
tattgccgc--------------acaagtggtgataaatcaactcgcgaccatactt----attcattcaaataccaaatacatgtcatcgatgctgaag |
49567732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 112 - 230
Target Start/End: Complemental strand, 49560950 - 49560837
Alignment:
| Q |
112 |
ttcattaataaatgggttgagattatccttgttcagtgtcaaactagctagctagatgtaaagccaaagccactaggattgatctattggtgagggattt |
211 |
Q |
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| T |
49560950 |
ttcattaataaaagcattgagattctccttgttcagtg-----ctaattagctagttgtaaagccaaaccctctaggattgatctattgatgacggattt |
49560856 |
T |
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| Q |
212 |
gggtacaccgaaacaattt |
230 |
Q |
| |
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| T |
49560855 |
gggtacaccaaaacaattt |
49560837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 43
Target Start/End: Complemental strand, 49560996 - 49560967
Alignment:
| Q |
14 |
cctatctatcttatcatgtaattgcttgta |
43 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
49560996 |
cctatctatcttatcatgtaattgcttgta |
49560967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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