View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5056-Insertion-3 (Length: 1034)

Name: NF5056-Insertion-3
Description: NF5056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5056-Insertion-3
NF5056-Insertion-3
[»] chr2 (3 HSPs)
chr2 (353-764)||(3915137-3915552)
chr2 (22-183)||(3915727-3915888)
chr2 (219-357)||(3915585-3915723)
[»] chr3 (24 HSPs)
chr3 (34-221)||(52651455-52651652)
chr3 (34-221)||(31682594-31682791)
chr3 (34-221)||(31895641-31895838)
chr3 (34-221)||(31900225-31900422)
chr3 (34-221)||(31915934-31916131)
chr3 (34-221)||(31949582-31949779)
chr3 (35-208)||(16052368-16052550)
chr3 (35-202)||(16035612-16035788)
chr3 (35-208)||(16061719-16061900)
chr3 (77-202)||(16046257-16046380)
chr3 (35-195)||(16057573-16057742)
chr3 (77-195)||(16039744-16039860)
chr3 (580-633)||(31683840-31683893)
chr3 (580-633)||(31894539-31894592)
chr3 (580-633)||(31899123-31899176)
chr3 (580-633)||(31914832-31914885)
chr3 (580-633)||(31948480-31948533)
chr3 (277-344)||(31683363-31683430)
chr3 (292-344)||(52652242-52652294)
chr3 (277-344)||(31895002-31895069)
chr3 (277-344)||(31899586-31899653)
chr3 (277-344)||(31915295-31915362)
chr3 (277-344)||(31948943-31949010)
chr3 (35-77)||(16039662-16039704)
[»] scaffold0005 (1 HSPs)
scaffold0005 (135-221)||(289745-289831)


Alignment Details
Target: chr2 (Bit Score: 387; Significance: 0; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 353 - 764
Target Start/End: Complemental strand, 3915552 - 3915137
Alignment:
Q  353 caattgtgatgccttagataccatgcatgtttcaaataatatttcttgatcatcagtaacttgtgttgtgactggaatgtgggtttgtttcatgttcttg 452  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3915552 caattgtgatgccttagataccatgcatgtttcaaataatatttcttgatcatcagtaacttgtgttgtgactggaatgtgggtttgtttcatgttcttg 3915453  T
Q  453 tggttttgccaaccttgttgtatctccagatgcaggtttaactggtagcctgtttcttgtggatgaagttcctatcatttctttagaagcacgttccagt 552  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3915452 tggttttgccaaccttgttgtatctccagatgcaggtttaactggtagcctgtttcttgtggatgaagttcctatcatttctttagaagcacgttccagt 3915353  T
Q  553 ttagaaactcaatacataaaacgacaacatttttaggaat----tgtaaaacacatgcagatgtagacacttgcaagtaagataactacttgaaatatta 648  Q
    |||| |||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3915352 ttaggaactcaatacataaaacgacaacatttttaggaattgtatgtaaaacacatgcagatgtagacacttgcaagtaagataactacttgaaatatta 3915253  T
Q  649 ttgacttaaatgcagttttagttccactattttgaccaaaccacgatttgttccctttctaattgtgcaattttagtcacccatttcagaaattttgacc 748  Q
    ||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3915252 ttggcttaaatgcagttttagtcccactattttgaccaaaccacgatttgttccctttctaattgtgcaattttagtcacccatttcagaaattttgacc 3915153  T
Q  749 atctaatctaatgatg 764  Q
    ||||||||||||||||    
T  3915152 atctaatctaatgatg 3915137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 150; E-Value: 9e-79
Query Start/End: Original strand, 22 - 183
Target Start/End: Complemental strand, 3915888 - 3915727
Alignment:
Q  22 ttgatatagagtggaaggaagcccctgttcaggcaagtaccgcagcacgtcgcaacaagtgtacgaagagcattcagctgttgaaaccccttgtcatcca 121  Q
    ||||| ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3915888 ttgatttagagtggaaggaagcccctgttcaggcaagcactgcagcacgtcgcaacaagtgtacgaagagcattcagctgttgaaaccccttgtcatcca 3915789  T
Q  122 gctttttgagactcttcaatttgctgatgcgcagagtgatgatgtttttgggaagtagattc 183  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3915788 gctttttgagactcttcaatttgctgatgcgcagagtgatgatgtttttgggaagtagattc 3915727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 219 - 357
Target Start/End: Complemental strand, 3915723 - 3915585
Alignment:
Q  219 ttctgcacttacatatgtgaagtgtagtcaaggaatggatctaagagaaggacagttgatcaatttaaattccttaagaatgggtaatccatctagcaaa 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3915723 ttctgcacttacatatgtgaagtgtagtcaaggaatggatctaagagaaggacagttgatcaatttaaattccttaagaatgggtaatccatctagcaaa 3915624  T
Q  319 tcatctggaagtacaaccaatgattcacatccctcaatt 357  Q
    ||||||||| | |||||||||||||||||||||||||||    
T  3915623 tcatctggatggacaaccaatgattcacatccctcaatt 3915585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 79; Significance: 2e-36; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 34 - 221
Target Start/End: Original strand, 52651455 - 52651652
Alignment:
Q  34 ggaaggaagcccctgttcaggcaagtaccgcagcacgtcgcaac----------aagtgtacgaagagcattcagctgttgaaaccccttgtcatccagc 123  Q
    |||||||| |||||||||||||||||||||||||||||| ||||          |||||| ||||||||||| || |||||||| |||||||| ||||||    
T  52651455 ggaaggaaacccctgttcaggcaagtaccgcagcacgtcacaacgatcaattgtaagtgtgcgaagagcattaagttgttgaaagcccttgtcgtccagc 52651554  T
Q  124 tttttgagactcttcaatttgctgatgcgcagagtgatgatgtttttgggaagtagattctccactggaaatgattccatacctaaacatccaccttc 221  Q
    |||||||||||||| || ||||||||| | |||| ||| |||||| ||||||| ||||| ||| |||||||||| ||||  |||| ||||||||||||    
T  52651555 tttttgagactctttaaattgctgatgtgtagagagataatgtttctgggaagaagattttcctctggaaatgactccaggcctatacatccaccttc 52651652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 34 - 221
Target Start/End: Original strand, 31682594 - 31682791
Alignment:
Q  34 ggaaggaagcccctgttcaggcaagtaccgcagcacgtcgcaac----------aagtgtacgaagagcattcagctgttgaaaccccttgtcatccagc 123  Q
    |||||||||||||||||||||||||||| |||| ||||||||||          |||||| | ||||||||| || |||||||| |||||||| ||||||    
T  31682594 ggaaggaagcccctgttcaggcaagtactgcagaacgtcgcaacgatcaattttaagtgtgcaaagagcattaagttgttgaaagcccttgtcgtccagc 31682693  T
Q  124 tttttgagactcttcaatttgctgatgcgcagagtgatgatgtttttgggaagtagattctccactggaaatgattccatacctaaacatccaccttc 221  Q
    || ||||||||||| || ||||||||| | |||| ||| |||||| ||||||| ||||| ||| |||||||||| |||| ||||| ||||||||||||    
T  31682694 ttcttgagactctttaaattgctgatgtgtagagagataatgtttctgggaagaagattttcctctggaaatgactccagacctatacatccaccttc 31682791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 34 - 221
Target Start/End: Complemental strand, 31895838 - 31895641
Alignment:
Q  34 ggaaggaagcccctgttcaggcaagtaccgcagcacgtcgcaac----------aagtgtacgaagagcattcagctgttgaaaccccttgtcatccagc 123  Q
    |||||||||||||||||||||||||||| |||| ||||||||||          |||||| | ||||||||| || |||||||| |||||||| ||||||    
T  31895838 ggaaggaagcccctgttcaggcaagtactgcagaacgtcgcaacgatcaattttaagtgtgcaaagagcattaagttgttgaaagcccttgtcgtccagc 31895739  T
Q  124 tttttgagactcttcaatttgctgatgcgcagagtgatgatgtttttgggaagtagattctccactggaaatgattccatacctaaacatccaccttc 221  Q
    || ||||||||||| || ||||||||| | |||| ||| |||||| ||||||| ||||| ||| |||||||||| |||| ||||| ||||||||||||    
T  31895738 ttcttgagactctttaaattgctgatgtgtagagagataatgtttctgggaagaagattttcctctggaaatgactccagacctatacatccaccttc 31895641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 34 - 221
Target Start/End: Complemental strand, 31900422 - 31900225
Alignment:
Q  34 ggaaggaagcccctgttcaggcaagtaccgcagcacgtcgcaac----------aagtgtacgaagagcattcagctgttgaaaccccttgtcatccagc 123  Q
    |||||||||||||||||||||||||||| |||| ||||||||||          |||||| | ||||||||| || |||||||| |||||||| ||||||    
T  31900422 ggaaggaagcccctgttcaggcaagtactgcagaacgtcgcaacgatcaattttaagtgtgcaaagagcattaagttgttgaaagcccttgtcgtccagc 31900323  T
Q  124 tttttgagactcttcaatttgctgatgcgcagagtgatgatgtttttgggaagtagattctccactggaaatgattccatacctaaacatccaccttc 221  Q
    || ||||||||||| || ||||||||| | |||| ||| |||||| ||||||| ||||| ||| |||||||||| |||| ||||| ||||||||||||    
T  31900322 ttcttgagactctttaaattgctgatgtgtagagagataatgtttctgggaagaagattttcctctggaaatgactccagacctatacatccaccttc 31900225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 34 - 221
Target Start/End: Complemental strand, 31916131 - 31915934
Alignment:
Q  34 ggaaggaagcccctgttcaggcaagtaccgcagcacgtcgcaac----------aagtgtacgaagagcattcagctgttgaaaccccttgtcatccagc 123  Q
    |||||||||||||||||||||||||||| |||| ||||||||||          |||||| | ||||||||| || |||||||| |||||||| ||||||    
T  31916131 ggaaggaagcccctgttcaggcaagtactgcagaacgtcgcaacgatcaattttaagtgtgcaaagagcattaagttgttgaaagcccttgtcgtccagc 31916032  T
Q  124 tttttgagactcttcaatttgctgatgcgcagagtgatgatgtttttgggaagtagattctccactggaaatgattccatacctaaacatccaccttc 221  Q
    || ||||||||||| || ||||||||| | |||| ||| |||||| ||||||| ||||| ||| |||||||||| |||| ||||| ||||||||||||    
T  31916031 ttcttgagactctttaaattgctgatgtgtagagagataatgtttctgggaagaagattttcctctggaaatgactccagacctatacatccaccttc 31915934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 34 - 221
Target Start/End: Complemental strand, 31949779 - 31949582
Alignment:
Q  34 ggaaggaagcccctgttcaggcaagtaccgcagcacgtcgcaac----------aagtgtacgaagagcattcagctgttgaaaccccttgtcatccagc 123  Q
    |||||||||||||||||||||||||||| |||| ||||||||||          |||||| | ||||||||| || |||||||| |||||||| ||||||    
T  31949779 ggaaggaagcccctgttcaggcaagtactgcagaacgtcgcaacgatcaattttaagtgtgcaaagagcattaagttgttgaaagcccttgtcgtccagc 31949680  T
Q  124 tttttgagactcttcaatttgctgatgcgcagagtgatgatgtttttgggaagtagattctccactggaaatgattccatacctaaacatccaccttc 221  Q
    || ||||||||||| || ||||||||| | |||| ||| |||||| ||||||| ||||| ||| |||||||||| |||| ||||| ||||||||||||    
T  31949679 ttcttgagactctttaaattgctgatgtgtagagagataatgtttctgggaagaagattttcctctggaaatgactccagacctatacatccaccttc 31949582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 35 - 208
Target Start/End: Original strand, 16052368 - 16052550
Alignment:
Q  35 gaaggaagcccctgttcaggcaagtaccgcagcacgtcgcaac-----------aagtgtacgaagagcattcagctgttgaaaccccttgtcatccagc 123  Q
    ||||||||||||||||| || |||||||||| |||||||||||           |||||||||||||||||| ||  ||||||||||||| || ||||||    
T  16052368 gaaggaagcccctgttctggaaagtaccgcaacacgtcgcaacgattaattttcaagtgtacgaagagcattaagtcgttgaaaccccttttcgtccagc 16052467  T
Q  124 tttttgagactcttcaatttgctgatgcgcagagtgatgatgtttttgggaagtagattctccactggaaatgattccataccta 208  Q
    |||||||||||||| |||||||||||  | |||| |||  ||||| |||||||||| |||||| || ||||||| ||||| ||||    
T  16052468 tttttgagactcttaaatttgctgat--gtagagagatattgtttctgggaagtaggttctcctctagaaatgactccatgccta 16052550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 35 - 202
Target Start/End: Original strand, 16035612 - 16035788
Alignment:
Q  35 gaaggaagcccctgttcaggcaagtaccgcagcacgtcgcaac-----------aagtgtacgaagagcattcagctgttgaaaccccttgtcatccagc 123  Q
    ||||||||||||||||| || |||||||||| |||||||||||           |||||||||||||||||| || |||||||||||||| || || |||    
T  16035612 gaaggaagcccctgttctggaaagtaccgcaacacgtcgcaacgattaattttcaagtgtacgaagagcattaagttgttgaaaccccttttcgtcgagc 16035711  T
Q  124 tttttgagactcttcaatttgctgatgcgcagagtgatgatgtttttgggaagtagattctccactggaaatgattcca 202  Q
    |||||||||||||| |||||||||||  | |||| |||  | ||| |||||||||| |||||| |||||||||| ||||    
T  16035712 tttttgagactcttaaatttgctgat--gtagagagatattctttctgggaagtaggttctcctctggaaatgactcca 16035788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 35 - 208
Target Start/End: Original strand, 16061719 - 16061900
Alignment:
Q  35 gaaggaagcccctgttcaggcaagtaccgcagcacgtcgcaa-----------caagtgtacgaagagcattcagctgttgaaaccccttgtcatccagc 123  Q
    ||||||||||| ||||| ||||||||||||| ||||||||||           ||||||||||||||||||| || ||||||||||| || || ||||||    
T  16061719 gaaggaagcccttgttctggcaagtaccgcaacacgtcgcaataattaattttcaagtgtacgaagagcattaagttgttgaaacccattttcgtccagc 16061818  T
Q  124 tttttgagactcttcaatttgctgatgcgcagagtgatgatgtttttgggaagtagattctccactggaaatgattccataccta 208  Q
    ||||| |||||||| |||||||||||    |||| ||| |||||| | |||||||| |||||| |||||||||| ||||| ||||    
T  16061819 tttttaagactcttaaatttgctgat---tagagagataatgtttctaggaagtaggttctcctctggaaatgactccatgccta 16061900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 77 - 202
Target Start/End: Original strand, 16046257 - 16046380
Alignment:
Q  77 caagtgtacgaagagcattcagctgttgaaaccccttgtcatccagctttttgagactcttcaatttgctgatgcgcagagtgatgatgtttttgggaag 176  Q
    ||||||||||||||||||| || |||||||||||||| || || ||||||||||||||||| |||||||||||  | |||| |||  | ||| |||||||    
T  16046257 caagtgtacgaagagcattaagttgttgaaaccccttttcgtctagctttttgagactcttaaatttgctgat--gtagagagatattctttctgggaag 16046354  T
Q  177 tagattctccactggaaatgattcca 202  Q
    ||| |||||| ||| |||||| ||||    
T  16046355 taggttctcctctgaaaatgactcca 16046380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 35 - 195
Target Start/End: Original strand, 16057573 - 16057742
Alignment:
Q  35 gaaggaagcccctgttcaggcaagtaccgcagcacgtcgcaac-----------aagtgtacgaagagcattcagctgttgaaaccccttgtcatccagc 123  Q
    ||||||||||||||||  ||||||||||||| |||||||||||           |||||||||||||||||| || |||||||||||||  || ||||||    
T  16057573 gaaggaagcccctgttttggcaagtaccgcaacacgtcgcaacgattaattttcaagtgtacgaagagcattaagttgttgaaacccctcttcgtccagc 16057672  T
Q  124 tttttgagactcttcaatttgctgatgcgcagagtgatgatgtttttgggaagtagattctccactggaaat 195  Q
    |||| || |||||| |||||||||||| |  ||| ||| ||||||  ||||||||| |||||| ||||||||    
T  16057673 ttttagatactcttaaatttgctgatgtg--gagagataatgtttcagggaagtaggttctcctctggaaat 16057742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 77 - 195
Target Start/End: Original strand, 16039744 - 16039860
Alignment:
Q  77 caagtgtacgaagagcattcagctgttgaaaccccttgtcatccagctttttgagactcttcaatttgctgatgcgcagagtgatgatgtttttgggaag 176  Q
    ||||||||||||||||||| || |||||||||||||  || ||||||||||||| |||||| |||||||||||| |  ||| ||| ||||||  ||| ||    
T  16039744 caagtgtacgaagagcattaagttgttgaaacccctcttcgtccagctttttgatactcttaaatttgctgatgtg--gagagataatgtttcaggggag 16039841  T
Q  177 tagattctccactggaaat 195  Q
    ||| |||||| ||||||||    
T  16039842 taggttctcctctggaaat 16039860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 580 - 633
Target Start/End: Original strand, 31683840 - 31683893
Alignment:
Q  580 catttttaggaattgtaaaacacatgcagatgtagacacttgcaagtaagataa 633  Q
    |||||||||||||||| ||||| | |||||||| ||||||||||||||||||||    
T  31683840 catttttaggaattgtgaaacataagcagatgtggacacttgcaagtaagataa 31683893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 580 - 633
Target Start/End: Complemental strand, 31894592 - 31894539
Alignment:
Q  580 catttttaggaattgtaaaacacatgcagatgtagacacttgcaagtaagataa 633  Q
    |||||||||||||||| ||||| | |||||||| ||||||||||||||||||||    
T  31894592 catttttaggaattgtgaaacataagcagatgtggacacttgcaagtaagataa 31894539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 580 - 633
Target Start/End: Complemental strand, 31899176 - 31899123
Alignment:
Q  580 catttttaggaattgtaaaacacatgcagatgtagacacttgcaagtaagataa 633  Q
    |||||||||||||||| ||||| | |||||||| ||||||||||||||||||||    
T  31899176 catttttaggaattgtgaaacataagcagatgtggacacttgcaagtaagataa 31899123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 580 - 633
Target Start/End: Complemental strand, 31914885 - 31914832
Alignment:
Q  580 catttttaggaattgtaaaacacatgcagatgtagacacttgcaagtaagataa 633  Q
    |||||||||||||||| ||||| | |||||||| ||||||||||||||||||||    
T  31914885 catttttaggaattgtgaaacataagcagatgtggacacttgcaagtaagataa 31914832  T

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Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 580 - 633
Target Start/End: Complemental strand, 31948533 - 31948480
Alignment:
Q  580 catttttaggaattgtaaaacacatgcagatgtagacacttgcaagtaagataa 633  Q
    |||||||||||||||| ||||| | |||||||| ||||||||||||||||||||    
T  31948533 catttttaggaattgtgaaacataagcagatgtggacacttgcaagtaagataa 31948480  T

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Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 277 - 344
Target Start/End: Original strand, 31683363 - 31683430
Alignment:
Q  277 atcaatttaaattccttaagaatgggtaatccatctagcaaatcatctggaagtacaaccaatgattc 344  Q
    |||||||| ||||| |||||| ||| | |||||||||||||||||||||| || ||| ||||||||||    
T  31683363 atcaatttcaattctttaagactggttgatccatctagcaaatcatctgggaggacatccaatgattc 31683430  T

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Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 292 - 344
Target Start/End: Original strand, 52652242 - 52652294
Alignment:
Q  292 ttaagaatgggtaatccatctagcaaatcatctggaagtacaaccaatgattc 344  Q
    |||||| |||||||||| ||||| |||||||||||||| ||| ||||||||||    
T  52652242 ttaagattgggtaatccgtctaggaaatcatctggaaggacatccaatgattc 52652294  T

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Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 277 - 344
Target Start/End: Complemental strand, 31895069 - 31895002
Alignment:
Q  277 atcaatttaaattccttaagaatgggtaatccatctagcaaatcatctggaagtacaaccaatgattc 344  Q
    |||||||| ||||| |||||| ||| | |||||||||||||| ||||||| || ||| ||||||||||    
T  31895069 atcaatttcaattctttaagactggttgatccatctagcaaaccatctgggaggacatccaatgattc 31895002  T

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Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 277 - 344
Target Start/End: Complemental strand, 31899653 - 31899586
Alignment:
Q  277 atcaatttaaattccttaagaatgggtaatccatctagcaaatcatctggaagtacaaccaatgattc 344  Q
    |||||||| ||||| |||||| ||| | |||||||||||||| ||||||| || ||| ||||||||||    
T  31899653 atcaatttcaattctttaagactggttgatccatctagcaaaccatctgggaggacatccaatgattc 31899586  T

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Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 277 - 344
Target Start/End: Complemental strand, 31915362 - 31915295
Alignment:
Q  277 atcaatttaaattccttaagaatgggtaatccatctagcaaatcatctggaagtacaaccaatgattc 344  Q
    |||||||| ||||| |||||| ||| | |||||||||||||| ||||||| || ||| ||||||||||    
T  31915362 atcaatttcaattctttaagactggttgatccatctagcaaaccatctgggaggacatccaatgattc 31915295  T

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Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 277 - 344
Target Start/End: Complemental strand, 31949010 - 31948943
Alignment:
Q  277 atcaatttaaattccttaagaatgggtaatccatctagcaaatcatctggaagtacaaccaatgattc 344  Q
    |||||||| ||||| |||||| ||| | |||||||||||||| ||||||| || ||| ||||||||||    
T  31949010 atcaatttcaattctttaagactggttgatccatctagcaaaccatctgggaggacatccaatgattc 31948943  T

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Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 77
Target Start/End: Original strand, 16039662 - 16039704
Alignment:
Q  35 gaaggaagcccctgttcaggcaagtaccgcagcacgtcgcaac 77  Q
    ||||||||||||| ||| ||||||||||||| |||||||||||    
T  16039662 gaaggaagcccctattctggcaagtaccgcaacacgtcgcaac 16039704  T

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Target: scaffold0005 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 135 - 221
Target Start/End: Original strand, 289745 - 289831
Alignment:
Q  135 cttcaatttgctgatgcgcagagtgatgatgtttttgggaagtagattctccactggaaatgattccatacctaaacatccaccttc 221  Q
    ||||||| |||||||||||||||  ||||| ||| | |||||||  |||||  |||||||||| ||||| |||| |||||| |||||    
T  289745 cttcaatgtgctgatgcgcagagaaatgatatttctaggaagtattttctcgtctggaaatgactccatgcctacacatccgccttc 289831  T

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