View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5056-Insertion-4 (Length: 925)
Name: NF5056-Insertion-4
Description: NF5056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5056-Insertion-4 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 897; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 897; E-Value: 0
Query Start/End: Original strand, 12 - 925
Target Start/End: Original strand, 33992788 - 33993703
Alignment:
| Q |
12 |
caatgaagggtgatgttttggaagatccagcaaatgaacctaaaaaggatatgtacatgttgactgtagacccagaggatgctccaaacgagccagagta |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33992788 |
caatgaagggtgatgttttggaagatccagcaaatgaacctaaaaaggatatgtacatgttgactgtagacccagaggatgctccaaacgagccagagta |
33992887 |
T |
|
| Q |
112 |
agcatgttgtaaatgactttatttataaccatattttttaaaaaggcccataagttatgggtcattgaggcatcattattcgttagttatatttgaatgt |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
33992888 |
agcatgttgtaaatgactttatttataaccatattttttaaaaaggcccataagttatgggccattgaggcatcattattcgttagttatatttgaatgt |
33992987 |
T |
|
| Q |
212 |
gattatcaaggatcgcaacatggctgcaaccagccttaaccgtaacaggaccacgattaaggctgcatcagccacatttgaccatgcttcttagtgatat |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33992988 |
gattatcaaggatcgcaacatggctgcaaccagccttaaccgtaacaggaccacgattaaggctgcatcagccacatttgaccatgcttcttagtgatat |
33993087 |
T |
|
| Q |
312 |
caaagatagtgacgcggccacaaccattaatgcaaattaaaacattcattatatccagaattagctctcgtttagtttcactacttacttggaaagtgtg |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33993088 |
caaagatagtgacgcggccacaaccattaatgcaaattaaaacattcattatatccagaattagctctcgtttagtttcactacttacttggaaagtgtg |
33993187 |
T |
|
| Q |
412 |
tcgcagatatgtggagattggatttgagttaggcattccagtatcgctgaacgggaagaggctttctccaggaaatttggttgctgagctgaatgagata |
511 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33993188 |
tcgcagatatgtggagattggatttgagttaggcattccagtatcgctgaacgggaagaggctttctccaggaaatttggttgctgagctgaatgagata |
33993287 |
T |
|
| Q |
512 |
ggtggaaggcatggaataggccgtgtcgacttggttgaagaccgcattgtaggcatgaagagccgaggagtttacgaaactccaggtggcaccattctct |
611 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33993288 |
ggtggaaggcatggaataggccgtgtcgacttggttgaagaccgcattgtaggcatgaagagccgaggagtttacgaaactccaggtggcaccattctct |
33993387 |
T |
|
| Q |
612 |
tcactgcagcaagagacttagagactttgactcttgatcgtgaaacacttcagcttaaagactcattagcacttaaatatgcagagttagtgtatgctgg |
711 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33993388 |
tcactgcagcaagagacttagagactttgactcttgatcgtgaaacacttcagcttaaagactcattagcacttaaatatgcagagttagtgtatgctgg |
33993487 |
T |
|
| Q |
712 |
aagatggtttgatccacttcgcgaatcgatggattcattcatggagaagatctcacagactacaacaggttcagtgagtttgaaactgtataaaggtagt |
811 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33993488 |
aagatggtttgatccacttcgcgaatcgatggattcattcatggagaagatctcacagactacaacaggttcagtgagtttgaaactgtataaaggtagt |
33993587 |
T |
|
| Q |
812 |
gcttctgtgacgggtcggaagagtccttatagtttatatagggaagatatttcttcatttgagagtggggagatatataatcatgctgatgctgt--ggg |
909 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
33993588 |
gcttctgtgacgggtcggaagagtccttatagtttatatagggaagatatttcttcatttgagagtggggagatatataatcatgctgatgctgttgggt |
33993687 |
T |
|
| Q |
910 |
ttataaagctttatgg |
925 |
Q |
| |
|
|||||||||||||||| |
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| T |
33993688 |
ttataaagctttatgg |
33993703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 397 - 839
Target Start/End: Original strand, 34000175 - 34000617
Alignment:
| Q |
397 |
tacttggaaagtgtgtcgcagatatgtggagattggatttgagttaggcattccagtatcgctgaacgggaagaggctttctccaggaaatttggttgct |
496 |
Q |
| |
|
|||| ||||| | ||| |||||||||||||||| |||||||||| |||||||||||| | |||||||||||||||| || |||||||||||||||||| |
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| T |
34000175 |
tactcggaaaatctgttgcagatatgtggagataggatttgagtcaggcattccagtgacagtgaacgggaagaggctatccccaggaaatttggttgct |
34000274 |
T |
|
| Q |
497 |
gagctgaatgagataggtggaaggcatggaataggccgtgtcgacttggttgaagaccgcattgtaggcatgaagagccgaggagtttacgaaactccag |
596 |
Q |
| |
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||||| |||||||||||||||||||||||||||||| ||||||| | |||||| ||| |||||||||| ||||||||||||||||||| |||||||||| |
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| T |
34000275 |
gagcttaatgagataggtggaaggcatggaataggctgtgtcgatatagttgaaaaccacattgtaggcctgaagagccgaggagtttatgaaactccag |
34000374 |
T |
|
| Q |
597 |
gtggcaccattctcttcactgcagcaagagacttagagactttgactcttgatcgtgaaacacttcagcttaaagactcattagcacttaaatatgcaga |
696 |
Q |
| |
|
||||||||||| ||||||| ||||||||||||||||||| ||| || || ||||||||||||||||||||||||||||| |||||| |||| |||||||| |
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|
| T |
34000375 |
gtggcaccattttcttcaccgcagcaagagacttagagagtttaacactcgatcgtgaaacacttcagcttaaagactcgttagcaattaagtatgcaga |
34000474 |
T |
|
| Q |
697 |
gttagtgtatgctggaagatggtttgatccacttcgcgaatcgatggattcattcatggagaagatctcacagactacaacaggttcagtgagtttgaaa |
796 |
Q |
| |
|
|||||||||||||||||| ||||| ||||| ||||| || || |||||| |||||||||| ||||||||| ||| ||||||||||||||||||||||||| |
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| T |
34000475 |
gttagtgtatgctggaaggtggttcgatcctcttcgtgagtcaatggatgcattcatggaaaagatctcagagattacaacaggttcagtgagtttgaaa |
34000574 |
T |
|
| Q |
797 |
ctgtataaaggtagtgcttctgtgacgggtcggaagagtcctt |
839 |
Q |
| |
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||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
34000575 |
ctgtataaaggcagtgcttctgtgacgggtcggaagagtcctt |
34000617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 78; E-Value: 8e-36
Query Start/End: Original strand, 12 - 121
Target Start/End: Original strand, 33999651 - 33999760
Alignment:
| Q |
12 |
caatgaagggtgatgttttggaagatccagcaaatgaacctaaaaaggatatgtacatgttgactgtagacccagaggatgctccaaacgagccagagta |
111 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||| | ||||| || |
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| T |
33999651 |
caatgaagggtgatgttttggaagattcagcaaatgaaccaaaaaaggatatctacatgttgactgtagacccagaggacgctccaaatcaaccagacta |
33999750 |
T |
|
| Q |
112 |
agcatgttgt |
121 |
Q |
| |
|
|||||||||| |
|
|
| T |
33999751 |
agcatgttgt |
33999760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 128; Significance: 1e-65; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 128; E-Value: 1e-65
Query Start/End: Original strand, 494 - 905
Target Start/End: Complemental strand, 18852698 - 18852287
Alignment:
| Q |
494 |
gctgagctgaatgagataggtggaaggcatggaataggccgtgtcgacttggttgaagaccgcattgtaggcatgaagagccgaggagtttacgaaactc |
593 |
Q |
| |
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|||||||| |||||||||||||||||||| ||||| ||||| ||||| ||||||| | || ||||||||||||| ||||| |||||||||||||| | |
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| T |
18852698 |
gctgagctcaatgagataggtggaaggcacggaattggccggatcgacatggttgagaatcggcttgtaggcatgaaaagccgcggagtttacgaaacac |
18852599 |
T |
|
| Q |
594 |
caggtggcaccattctcttcactgcagcaagagacttagagactttgactcttgatcgtgaaacacttcagcttaaagactcattagcacttaaatatgc |
693 |
Q |
| |
|
| ||||| || || || || |||| ||| | || || ||| ||||||| |||||||| |||||| | ||| | ||||| |||||||||||||||||||| |
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|
| T |
18852598 |
ctggtggaactatcctttttgctgccgcacgggagttggagtctttgacacttgatcgagaaacaatacaggtcaaagattcattagcacttaaatatgc |
18852499 |
T |
|
| Q |
694 |
agagttagtgtatgctggaagatggtttgatccacttcgcgaatcgatggattcattcatggagaagatctcacagactacaacaggttcagtgagtttg |
793 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||| |||||| | || ||| ||||||| || |||| ||||||||||| |||| |||| |
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|
| T |
18852498 |
agagttagtgtatgccggaagatggtttgatccacttcgcgaatccatggatgcctttatgcagaagattacagagaccacaacaggttctgtgactttg |
18852399 |
T |
|
| Q |
794 |
aaactgtataaaggtagtgcttctgtgacgggtcggaagagtccttatagtttatatagggaagatatttcttcatttgagagtggggagatatataatc |
893 |
Q |
| |
|
||| | || |||||| || | |||| || ||| ||||||| || | ||| | |||||| ||||||| || |||||||||| | | || |||||| ||| |
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|
| T |
18852398 |
aaattatacaaaggttctgttactgtaacaggtaggaagagcccctttagcctgtataggcaagatatctcatcatttgagaatagtgatatatatgatc |
18852299 |
T |
|
| Q |
894 |
atgctgatgctg |
905 |
Q |
| |
|
| |||||||||| |
|
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| T |
18852298 |
aagctgatgctg |
18852287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 17 - 97
Target Start/End: Complemental strand, 18853293 - 18853213
Alignment:
| Q |
17 |
aagggtgatgttttggaagatccagcaaatgaacctaaaaaggatatgtacatgttgactgtagacccagaggatgctcca |
97 |
Q |
| |
|
||||| ||| |||||||||| ||||| ||||| || |||||||||||||||||| || |||||||||| |||||||||||| |
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|
| T |
18853293 |
aagggcgatattttggaagacccagctaatgagcccaaaaaggatatgtacatgatgtctgtagacccggaggatgctcca |
18853213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 108; Significance: 9e-54; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 108; E-Value: 9e-54
Query Start/End: Original strand, 494 - 905
Target Start/End: Complemental strand, 42865809 - 42865398
Alignment:
| Q |
494 |
gctgagctgaatgagataggtggaaggcatggaataggccgtgtcgacttggttgaagaccgcattgtaggcatgaagagccgaggagtttacgaaactc |
593 |
Q |
| |
|
|||||||| |||||||||||||||| ||| ||||| ||||| ||||| ||||||| | | ||||||||||||||||||| |||||||| ||||||| |
|
|
| T |
42865809 |
gctgagctcaatgagataggtggaaagcacggaattggccggatcgacatggttgagaataggcttgtaggcatgaagagccgtggagtttatgaaactc |
42865710 |
T |
|
| Q |
594 |
caggtggcaccattctcttcactgcagcaagagacttagagactttgactcttgatcgtgaaacacttcagcttaaagactcattagcacttaaatatgc |
693 |
Q |
| |
|
| ||||| || || ||||| | |||||| | || || ||| ||||||| |||||||| |||||| | ||| | ||||| ||||||| ||||||||||| |
|
|
| T |
42865709 |
ctggtgggactatcctctttaaagcagcacgggagttggagtctttgacacttgatcgagaaacaatacaggtgaaagatacattagcccttaaatatgc |
42865610 |
T |
|
| Q |
694 |
agagttagtgtatgctggaagatggtttgatccacttcgcgaatcgatggattcattcatggagaagatctcacagactacaacaggttcagtgagtttg |
793 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| || |||||||| | || ||| ||||||| | ||| ||||||||||| || | |||| |
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|
| T |
42865609 |
agagttagtgtatgctggtagatggtttgatccacttcgtgagtcgatggacgcctttatgcagaagattactgcgaccacaacaggttccgttactttg |
42865510 |
T |
|
| Q |
794 |
aaactgtataaaggtagtgcttctgtgacgggtcggaagagtccttatagtttatatagggaagatatttcttcatttgagagtggggagatatataatc |
893 |
Q |
| |
|
||| |||| |||||| || | |||| | ||| ||||||||||| ||| | |||||| ||||||| || ||||||||| || | ||||||||| ||| |
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|
| T |
42865509 |
aaattgtacaaaggttctgttactgtagctggtatgaagagtccttttagcctgtataggcaagatatctcatcatttgagggtagtgagatatatgatc |
42865410 |
T |
|
| Q |
894 |
atgctgatgctg |
905 |
Q |
| |
|
| |||||||||| |
|
|
| T |
42865409 |
aagctgatgctg |
42865398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 17 - 97
Target Start/End: Complemental strand, 42866348 - 42866268
Alignment:
| Q |
17 |
aagggtgatgttttggaagatccagcaaatgaacctaaaaaggatatgtacatgttgactgtagacccagaggatgctcca |
97 |
Q |
| |
|
||||||||| |||||||||| || || |||||||| || ||||||||||||||| || |||||||||| |||||||||||| |
|
|
| T |
42866348 |
aagggtgatattttggaagacccggctaatgaacccaagaaggatatgtacatgatgtctgtagacccggaggatgctcca |
42866268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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