View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5056-Insertion-5 (Length: 894)
Name: NF5056-Insertion-5
Description: NF5056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5056-Insertion-5 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 170; Significance: 9e-91; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 170; E-Value: 9e-91
Query Start/End: Original strand, 628 - 894
Target Start/End: Complemental strand, 5161062 - 5160779
Alignment:
| Q |
628 |
aattcatattttcttaacattatattattagaaaagatatgctgaaatatcatttgattaaaaaagagctgaaaatatcaaaagtacttataagttataa |
727 |
Q |
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| T |
5161062 |
aattcatatgttcttaacattgtgttattagaaaagatatgtagaaatattatttgattcaaaaagagctgaaaatatcaaaagtacttatatgttataa |
5160963 |
T |
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| Q |
728 |
aataaatccatataa-------------cc---cttaacccatgccactcacacatggttcatatccataacagtataacatttttatcaaaaatgcatt |
811 |
Q |
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| T |
5160962 |
aataaatccatataaaaacttatagactcctgtcttaacccatgccactcacacatggttcatatccataacaatataacatttttatcataaatgcatt |
5160863 |
T |
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| Q |
812 |
tctattagaaaacaggtt-cctatttatctagtggcaatccaatctactgctaagatcactcatcaagtggattgagcacttgt |
894 |
Q |
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| T |
5160862 |
tctattagaaaacaggttccctatttatctagtggcaatccaatctactgctaagatcactcatcaagaggattgagtacttgt |
5160779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 798 - 894
Target Start/End: Complemental strand, 5156844 - 5156747
Alignment:
| Q |
798 |
atcaaaaatgcatttctattagaaaacaggttcc-tatttatctagtggcaatccaatctactgctaagatcactcatcaagtggattgagcacttgt |
894 |
Q |
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| T |
5156844 |
atcataaatgaatttctattagaaaagaggttccctatttatctagtggcaatccaatctactgctaagatcactcatcaagtggattgagcacttgt |
5156747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 418 - 481
Target Start/End: Complemental strand, 5157518 - 5157455
Alignment:
| Q |
418 |
aaagttttgttcttgatctaagaagagaaactcaacagtaacttcagcgccatttagtactact |
481 |
Q |
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| T |
5157518 |
aaagttttgttcttgatctaaggagagaaacataacagtaacttcagcgccattaagtactact |
5157455 |
T |
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