View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5056-Insertion-6 (Length: 690)
Name: NF5056-Insertion-6
Description: NF5056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5056-Insertion-6 |
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| [»] chr6 (1 HSPs) |
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| [»] scaffold0103 (1 HSPs) |
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| [»] scaffold0016 (3 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 651; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 651; E-Value: 0
Query Start/End: Original strand, 8 - 690
Target Start/End: Complemental strand, 2631920 - 2631238
Alignment:
| Q |
8 |
ttttacacggtaattacttgctataatttggttgttaccttttcaggtcagttaatggtgctcttgcttaactgaaattgccagattgtgaccaccaatg |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |
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| T |
2631920 |
ttttacacggtaattacttgctataatttggttgttaccttttcaggtcagttaatggtgctcttgtttaactgaaattgccagattgtgactaccaatg |
2631821 |
T |
|
| Q |
108 |
gatagtgaagcgcggaaaattctgcacgatgtaagtagaaacctcgatttcgcgacttttataaactgtggtttagtttggtcgccgtgacttttgtttt |
207 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
2631820 |
gatactgaagcgcggaaaattctgcacgatgtaagtagaaacctcgatttcgcgacttttatgaactgtggtttagtttggtcgccgtgacttttgtttt |
2631721 |
T |
|
| Q |
208 |
gtttgattaggtttattcatcgctgttaatttctcatttaaatattgttatgatgatttttggtttattctgttacaaatgcactctgagtactcataat |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2631720 |
gtttgattaggtttattcatcgctgttaatttctcatttaaatattgttttgatgatttttggtttattctgttacaaatgcactctgagtactcataat |
2631621 |
T |
|
| Q |
308 |
aattgtatgcaagtgttagcaacaaagactgtgaatacttttttagcgtcattgtcttaatcttgaacattaaaggctaggattaattatatttttagtt |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2631620 |
aattgtatgcaagtgttagcaacaaagactgtgtatacttttttagcgtcattgtcttaatcttgaacattaaaggctaggattaattatatttttagtt |
2631521 |
T |
|
| Q |
408 |
gcagtgtttctatatttctgatgcagttcttgtgaatttaggttataaaacataaaaatctttttaaaacaaaatcataaagatgataaattaattcaag |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2631520 |
gcagtgtttctatatttctgatgcagttcttgtgaatttaggttataaaacataaaaatctttttaaaacaaaatcataaagatgataaattaattcaag |
2631421 |
T |
|
| Q |
508 |
gccttacattaagatgatattagtttttgaaattacaaaaagaaacttatagtaatttcacttacccttttcttggcaggtgcttgatgaaattggtgtg |
607 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2631420 |
gccttacattaagatgatattagcttttgaaattacaaaaagaaacttatagtaatttcacttacccttttcttggcaggtgcttgatgaaattggtgtg |
2631321 |
T |
|
| Q |
608 |
gatgttgcctcaggtaggaataagcctttattaatctctgcacttatatcaactgacagtgcttttggtcaagctaatttgta |
690 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2631320 |
gatgttgcctcaggtaggaataagcttttattaatctctgcacttatatcaactgacagtgcttttggtcaagctaatttgta |
2631238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0103 (Bit Score: 635; Significance: 0; HSPs: 1)
Name: scaffold0103
Description:
Target: scaffold0103; HSP #1
Raw Score: 635; E-Value: 0
Query Start/End: Original strand, 8 - 690
Target Start/End: Original strand, 8092 - 8774
Alignment:
| Q |
8 |
ttttacacggtaattacttgctataatttggttgttaccttttcaggtcagttaatggtgctcttgcttaactgaaattgccagattgtgaccaccaatg |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |
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|
| T |
8092 |
ttttacacggtaattacttgctataatttggttgttaccttttcaggtcagttaatggtgctcttgattaactgaaattgccagattgtgactaccaatg |
8191 |
T |
|
| Q |
108 |
gatagtgaagcgcggaaaattctgcacgatgtaagtagaaacctcgatttcgcgacttttataaactgtggtttagtttggtcgccgtgacttttgtttt |
207 |
Q |
| |
|
|||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
8192 |
gatactaaagcgcggaaaattctgcacgatgtaagtagaaacctcgatttcgcgacttttatgaactgtggtttagtttggtcgccgtgacttttgtttt |
8291 |
T |
|
| Q |
208 |
gtttgattaggtttattcatcgctgttaatttctcatttaaatattgttatgatgatttttggtttattctgttacaaatgcactctgagtactcataat |
307 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8292 |
gtttgattaggtttattcatcgctgttaatttctcatttaaatattgtattgatgatttttggtttattctgttacaaatgcactctgagtactcataat |
8391 |
T |
|
| Q |
308 |
aattgtatgcaagtgttagcaacaaagactgtgaatacttttttagcgtcattgtcttaatcttgaacattaaaggctaggattaattatatttttagtt |
407 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8392 |
aattgtatgcaagtattagcaacaaagactgtgtatacttttttagcgtcattgtcttaatcttgaacattaaaggctaggattaattatatttttagtt |
8491 |
T |
|
| Q |
408 |
gcagtgtttctatatttctgatgcagttcttgtgaatttaggttataaaacataaaaatctttttaaaacaaaatcataaagatgataaattaattcaag |
507 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8492 |
gcagtgtttctatatttctgatgcagttcatgtgaatttaggttataaaacataaaaatctttttaaaacaaaatcataaagatgataaattaattcaag |
8591 |
T |
|
| Q |
508 |
gccttacattaagatgatattagtttttgaaattacaaaaagaaacttatagtaatttcacttacccttttcttggcaggtgcttgatgaaattggtgtg |
607 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8592 |
gccttacattaagatgatattagcttttgaaattacaaaaagaaacttatagtaatttcacttacccttttcttggcaggtgcttgatgaaattggtgtg |
8691 |
T |
|
| Q |
608 |
gatgttgcctcaggtaggaataagcctttattaatctctgcacttatatcaactgacagtgcttttggtcaagctaatttgta |
690 |
Q |
| |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8692 |
gatgttgcctcaggtaggaataagcttttattaatctctgcacttatatcaactgacagtgcttttggtcaagctaatttgta |
8774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 181; Significance: 2e-97; HSPs: 3)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 204 - 420
Target Start/End: Complemental strand, 44855 - 44639
Alignment:
| Q |
204 |
ttttgtttgattaggtttattcatcgctgttaatttctcatttaaatattgttatgatgatttttggtttattctgttacaaatgcactctgagtactca |
303 |
Q |
| |
|
||||||||||||||||| |||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||| |
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|
| T |
44855 |
ttttgtttgattaggttaattcatcgctattaatttctcatttaaatattgttttgatgatttttggtttattctgttacaaatgcaccctgagcactca |
44756 |
T |
|
| Q |
304 |
taataattgtatgcaagtgttagcaacaaagactgtgaatacttttttagcgtcattgtcttaatcttgaacattaaaggctaggattaattatattttt |
403 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| |
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|
| T |
44755 |
taataattgtatgcaagtgttagcaacaaagactgtgtatatttttttagcgtcattgtcttgatcttgaacattaaaggctatgattaattatattttt |
44656 |
T |
|
| Q |
404 |
agttgcagtgtttctat |
420 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
44655 |
agttgcagtgtttctat |
44639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 137 - 203
Target Start/End: Complemental strand, 44961 - 44895
Alignment:
| Q |
137 |
tgtaagtagaaacctcgatttcgcgacttttataaactgtggtttagtttggtcgccgtgacttttg |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |
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|
| T |
44961 |
tgtaagtagaaacctcgatttcgcgacttttatgaactgtggtttagtttgatcgccgtgacttttg |
44895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 8 - 72
Target Start/End: Complemental strand, 45034 - 44970
Alignment:
| Q |
8 |
ttttacacggtaattacttgctataatttggttgttaccttttcaggtcagttaatggtgctctt |
72 |
Q |
| |
|
|||||||| |||||| ||||||||||||||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
45034 |
ttttacactctaattatttgctataatttggtagttaccttttcaagtcagttaatggtgctctt |
44970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 141; Significance: 1e-73; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 252 - 420
Target Start/End: Complemental strand, 27259985 - 27259817
Alignment:
| Q |
252 |
ttgttatgatgatttttggtttattctgttacaaatgcactctgagtactcataataattgtatgcaagtgttagcaacaaagactgtgaatactttttt |
351 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| ||| |||||| |
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|
| T |
27259985 |
ttgttttgatgatttttggtttattctgttacaaatgcaccctgagcactcataataattgtatgcaagtgttagcaacaaagactgtgtatattttttt |
27259886 |
T |
|
| Q |
352 |
agcgtcattgtcttaatcttgaacattaaaggctaggattaattatatttttagttgcagtgtttctat |
420 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
27259885 |
agcgtcattgtcttgatcttgaacattaaaggctatgattaattatatttttagttgcagtgtttctat |
27259817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 138; Significance: 9e-72; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 138; E-Value: 9e-72
Query Start/End: Original strand, 500 - 690
Target Start/End: Complemental strand, 39083277 - 39083085
Alignment:
| Q |
500 |
aattcaaggccttacattaagatgatattagtttttgaaattacaaaaagaaacttatagtaatttcacttacccttttcttggcaggtgcttgatgaaa |
599 |
Q |
| |
|
||||||||||||||||||||||||||||||| || |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39083277 |
aattcaaggccttacattaagatgatattagcttctgaaattacaaaaagaaatttatagtaatttcacttacccttttcttggcaggtgcttgatgaaa |
39083178 |
T |
|
| Q |
600 |
ttggtgtggatgttgcct--caggtaggaataagcctttattaatctctgcacttatatcaactgacagtgcttttggtcaagctaatttgta |
690 |
Q |
| |
|
| ||| | ||| |||||| ||||||||||||||| |||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
39083177 |
tcggtatcgatattgcctcacaggtaggaataagcttttactaatctctgcatttatatcatctgacagtgcttttggtcaagctaatttgta |
39083085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 109; Significance: 2e-54; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 205 - 420
Target Start/End: Complemental strand, 38315455 - 38315246
Alignment:
| Q |
205 |
tttgtttgattaggtttattcatcgctgttaatttctcatttaaatattgttatgatgatttttggtttattctgttacaaatgcactctgagtactcat |
304 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |||||||||||||| ||||||| | ||||| | |||| |
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|
| T |
38315455 |
tttgtttgattaggtttattcattgctgttaatttctcatttaaatattgttttgatgatttctggtttattctgttgcaaatgctccctgagcattcat |
38315356 |
T |
|
| Q |
305 |
aataattgtatgcaagtgttagcaacaaagactgtgaatacttttttagcgtcattgtcttaatcttgaacattaaaggctaggattaattatattttta |
404 |
Q |
| |
|
|||| |||||| ||||||||| ||||||| ||||| ||| |||||||| || ||| | |||||||||||||||||||||||||||| ||||| |
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|
| T |
38315355 |
aatagctgtatgtaagtgttagaaacaaaggctgtgtataattttttagtgtaatt------tttttgaacattaaaggctaggattaattatgatttta |
38315262 |
T |
|
| Q |
405 |
gttgcagtgtttctat |
420 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
38315261 |
gttgcagtgtttctat |
38315246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 8 - 203
Target Start/End: Complemental strand, 38315691 - 38315496
Alignment:
| Q |
8 |
ttttacacggtaattacttgctataatttggttgttaccttttcaggtcagttaatggtgctcttgcttaactgaaattgccagattgtgaccaccaatg |
107 |
Q |
| |
|
|||||||| | |||||||||||| |||| ||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||||| |
|
|
| T |
38315691 |
ttttacactgaaattacttgctaaaattgggttgttacattttcaggtcagttaatggtgttcttgcttaactgaaattgccagattgtgactaacaatg |
38315592 |
T |
|
| Q |
108 |
gatagtgaagcgcggaaaattctgcacgatgtaag-----tagaaacctcgatttcgcgacttttataaactgtggtttagtttggtcgccgtgactttt |
202 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| |||||||||| ||| ||||| || ||||||||||||||||||| || ||||||||| |
|
|
| T |
38315591 |
gatactgaagcgcggaaaattctgcacgatgtaagtagactagaaacctc-----cgcaactttaatgaactgtggtttagtttggttgctgtgactttt |
38315497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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