View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5056-Insertion-8 (Length: 639)
Name: NF5056-Insertion-8
Description: NF5056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5056-Insertion-8 |
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Alignment Details
Target: chr7 (Bit Score: 179; Significance: 3e-96; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 179; E-Value: 3e-96
Query Start/End: Original strand, 249 - 435
Target Start/End: Complemental strand, 2493795 - 2493609
Alignment:
| Q |
249 |
agttgatggtactaggagtgttagttcttggaattggttactgttctgaaatttttctgatgctggcttgcttgtacgtgtggaaatgtttgatatgatt |
348 |
Q |
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| T |
2493795 |
agttgatggtactaggagtgttagttcttggaattggttactgttctgaaatttttctgatgctggcttgcttgtacgtgtggaaatgtttgatatgatt |
2493696 |
T |
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| Q |
349 |
taatttaattttctctgttcattgttcagttttattttgtttgagagtgaaatatgaacagtaaatttggcagtgtcatcatattat |
435 |
Q |
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| T |
2493695 |
taatttaattttctctgttcattgttcagttttattttgtttgaaagtgaaatttgaacagtaaatttggcagtgtcatcatattat |
2493609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 99 - 177
Target Start/End: Complemental strand, 2493949 - 2493871
Alignment:
| Q |
99 |
tgctatgagatattatgaattatgaatgaggaattatcatcacctttgttaacatttttagatatgatcaagttaaggg |
177 |
Q |
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| T |
2493949 |
tgctatgagatattatgaattatgaatgaggaattatgatcacctttgttaacatttttagatatgatcaagttaaggg |
2493871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 543 - 599
Target Start/End: Complemental strand, 2493496 - 2493440
Alignment:
| Q |
543 |
taaattgtattcgtgtctgagagaaagaggcagaaagtgttactgtttgatcagaag |
599 |
Q |
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| T |
2493496 |
taaattgtattcgtgtctgagagaaagaggcagaaagtgttgctgtttgatcagaag |
2493440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 7 - 54
Target Start/End: Complemental strand, 2494035 - 2493988
Alignment:
| Q |
7 |
agtaattagatagatttaagtactatgttacttggttaattaattagc |
54 |
Q |
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| T |
2494035 |
agtaattagatagatttaagtactatgtaacttggttaattaattagc |
2493988 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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