View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5056_high_1 (Length: 237)

Name: NF5056_high_1
Description: NF5056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5056_high_1
NF5056_high_1
[»] chr6 (40 HSPs)
chr6 (15-219)||(25071554-25071758)
chr6 (15-219)||(26974947-26975151)
chr6 (18-219)||(26635585-26635786)
chr6 (18-219)||(26741551-26741752)
chr6 (15-219)||(26949556-26949760)
chr6 (15-171)||(26617269-26617418)
chr6 (15-171)||(26723197-26723346)
chr6 (37-219)||(26811404-26811586)
chr6 (17-216)||(26959063-26959263)
chr6 (37-219)||(26848555-26848737)
chr6 (15-219)||(27665205-27665409)
chr6 (82-219)||(27214312-27214449)
chr6 (82-219)||(27234779-27234916)
chr6 (15-110)||(24715586-24715684)
chr6 (76-220)||(27698643-27698787)
chr6 (76-220)||(27724994-27725138)
chr6 (76-220)||(28781033-28781177)
chr6 (76-220)||(28786172-28786316)
chr6 (76-220)||(28792293-28792437)
chr6 (67-220)||(26802336-26802489)
chr6 (76-220)||(27229126-27229270)
chr6 (89-220)||(27604867-27604998)
chr6 (76-220)||(27611151-27611295)
chr6 (76-220)||(27718528-27718672)
chr6 (67-219)||(28234459-28234611)
chr6 (89-184)||(27531359-27531454)
chr6 (89-195)||(27593182-27593288)
chr6 (89-195)||(27678865-27678971)
chr6 (124-220)||(26622870-26622966)
chr6 (124-220)||(26728848-26728944)
chr6 (89-212)||(31284190-31284313)
chr6 (89-184)||(27338227-27338322)
chr6 (89-184)||(27398967-27399062)
chr6 (125-204)||(28098567-28098646)
chr6 (91-181)||(26055859-26055949)
chr6 (91-181)||(26075829-26075919)
chr6 (101-195)||(26893645-26893739)
chr6 (67-184)||(26646409-26646526)
chr6 (67-184)||(26752377-26752494)
chr6 (124-220)||(26884057-26884153)
[»] chr2 (1 HSPs)
chr2 (15-219)||(17993772-17993976)
[»] scaffold1254 (1 HSPs)
scaffold1254 (76-220)||(66-210)
[»] scaffold0419 (1 HSPs)
scaffold0419 (76-220)||(7419-7563)
[»] scaffold0349 (2 HSPs)
scaffold0349 (76-220)||(3571-3715)
scaffold0349 (76-220)||(14504-14648)
[»] scaffold0277 (2 HSPs)
scaffold0277 (76-220)||(13781-13925)
scaffold0277 (89-184)||(4833-4928)
[»] scaffold0038 (1 HSPs)
scaffold0038 (67-219)||(34620-34772)
[»] chr5 (1 HSPs)
chr5 (89-181)||(16688944-16689036)
[»] chr4 (6 HSPs)
chr4 (124-184)||(18679751-18679811)
chr4 (124-220)||(18699584-18699680)
chr4 (104-212)||(5091131-5091239)
chr4 (124-184)||(18655661-18655721)
chr4 (124-184)||(18724269-18724329)
chr4 (124-184)||(18731688-18731748)
[»] chr8 (1 HSPs)
chr8 (15-183)||(31903782-31903950)


Alignment Details
Target: chr6 (Bit Score: 141; Significance: 5e-74; HSPs: 40)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 15 - 219
Target Start/End: Complemental strand, 25071758 - 25071554
Alignment:
Q  15 atgaagaagaagcatagtctttagagaagacaacaatggcaattcttgagttttcaatgctcttgaagagcgaaggtgtgattttatcacctctctgaag 114  Q
    ||||||||||||||||||||||||||||||| | |||||||||||| || | |||||||||||||  |||||||||||||||||  |||||||||| |||    
T  25071758 atgaagaagaagcatagtctttagagaagacgataatggcaattctcgaatcttcaatgctcttgcggagcgaaggtgtgatttcgtcacctctcttaag 25071659  T
Q  115 ctccttgtaatcaatgaaggtgttgattcctttgtcagaaagagctttatagagattaccagtaaaaccgaatcgagtgtcggtacccctgaaactaatg 214  Q
    ||| |||| |||||| ||||||| ||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||    
T  25071658 ctctttgtcatcaataaaggtgtggattcctttgtcagaaagagctttataaagattaccggtaaaaccgaatcgagtgtcggtacccctgaaactaatg 25071559  T
Q  215 aacac 219  Q
    |||||    
T  25071558 aacac 25071554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 15 - 219
Target Start/End: Complemental strand, 26975151 - 26974947
Alignment:
Q  15 atgaagaagaagcatagtctttagagaagacaacaatggcaattcttgagttttcaatgctcttgaagagcgaaggtgtgattttatcacctctctgaag 114  Q
    ||||||||||||||||||||||||||||||| | ||||| ||| || |||| |||||||||||||| |||||||||||||||||  || ||| | | |||    
T  26975151 atgaagaagaagcatagtctttagagaagacgataatggtaatcctcgagtcttcaatgctcttgaggagcgaaggtgtgatttcgtccccttttttaag 26975052  T
Q  115 ctccttgtaatcaatgaaggtgttgattcctttgtcagaaagagctttatagagattaccagtaaaaccgaatcgagtgtcggtacccctgaaactaatg 214  Q
    |||||||| |||||||||| |||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||| ||||||||||||    
T  26975051 ctccttgtcatcaatgaagatgttgattcctttgtcagaaagagctttatagaggttaccggtgaaaccgaatcgagtgtcggtacctctgaaactaatg 26974952  T
Q  215 aacac 219  Q
    |||||    
T  26974951 aacac 26974947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 18 - 219
Target Start/End: Complemental strand, 26635786 - 26635585
Alignment:
Q  18 aagaagaagcatagtctttagagaagacaacaatggcaattcttgagttttcaatgctcttgaagagcgaaggtgtgattttatcacctctctgaagctc 117  Q
    ||||||||||||| || |||||||| || | ||||||||| || || | |||||||||||||| ||||||||||||||||| ||| ||| | | ||||||    
T  26635786 aagaagaagcatattccttagagaaaacgataatggcaatcctcgactcttcaatgctcttgaggagcgaaggtgtgatttcatccccttttttaagctc 26635687  T
Q  118 cttgtaatcaatgaaggtgttgattcctttgtcagaaagagctttatagagattaccagtaaaaccgaatcgagtgtcggtacccctgaaactaatgaac 217  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||| |||||||||| ||||||||||||||||||    
T  26635686 cttgtcatcaatgaaggtgttgattcctttgtcagaaagagctttatagaggttaccggtgaaaccgaattgagtgtcggtgcccctgaaactaatgaac 26635587  T
Q  218 ac 219  Q
    ||    
T  26635586 ac 26635585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 18 - 219
Target Start/End: Complemental strand, 26741752 - 26741551
Alignment:
Q  18 aagaagaagcatagtctttagagaagacaacaatggcaattcttgagttttcaatgctcttgaagagcgaaggtgtgattttatcacctctctgaagctc 117  Q
    ||||||||||||| || |||||||| || | ||||||||| || || | |||||||||||||| ||||||||||||||||| ||| ||| | | ||||||    
T  26741752 aagaagaagcatattccttagagaaaacgataatggcaatcctcgactcttcaatgctcttgaggagcgaaggtgtgatttcatccccttttttaagctc 26741653  T
Q  118 cttgtaatcaatgaaggtgttgattcctttgtcagaaagagctttatagagattaccagtaaaaccgaatcgagtgtcggtacccctgaaactaatgaac 217  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||| |||||||||| ||||||||||||||||||    
T  26741652 cttgtcatcaatgaaggtgttgattcctttgtcagaaagagctttatagaggttaccggtgaaaccgaattgagtgtcggtgcccctgaaactaatgaac 26741553  T
Q  218 ac 219  Q
    ||    
T  26741552 ac 26741551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 15 - 219
Target Start/End: Complemental strand, 26949760 - 26949556
Alignment:
Q  15 atgaagaagaagcatagtctttagagaagacaacaatggcaattcttgagttttcaatgctcttgaagagcgaaggtgtgattttatcacctctctgaag 114  Q
    |||||||||||||||| || ||||| ||||| | |||||||||||| || | |||||| ||||||| ||| |||||||||||||  |||||| |||||||    
T  26949760 atgaagaagaagcatattccttagaaaagacgataatggcaattctcgattcttcaattctcttgaggagtgaaggtgtgatttcgtcacctttctgaag 26949661  T
Q  115 ctccttgtaatcaatgaaggtgttgattcctttgtcagaaagagctttatagagattaccagtaaaaccgaatcgagtgtcggtacccctgaaactaatg 214  Q
    |||||| | ||||||||||||   |||||| |||||||| |||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||    
T  26949660 ctccttatcatcaatgaaggttcggattcccttgtcagagagagctttatagagattaccggtgaaaccgaatcgagtgtcggtacctctgaaactaatg 26949561  T
Q  215 aacac 219  Q
    |||||    
T  26949560 aacac 26949556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 15 - 171
Target Start/End: Complemental strand, 26617418 - 26617269
Alignment:
Q  15 atgaagaagaagcatagtctttagagaagacaacaatggcaattcttgagttttcaatgctcttgaagagcgaaggtgtgattttatcacctctctgaag 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||| |||||||||||||||    
T  26617418 atgaagaagaagcatagtctttagagaagacaacaatggcaattcttgagttttcaatgc-------gagcgaaggtgtgatttcatcacctctctgaag 26617326  T
Q  115 ctccttgtaatcaatgaaggtgttgattcctttgtcagaaagagctttatagagatt 171  Q
    |||||||| ||||||||||||   || |||||||||| |||||||||||||||||||    
T  26617325 ctccttgtcatcaatgaaggttcggactcctttgtcacaaagagctttatagagatt 26617269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 15 - 171
Target Start/End: Complemental strand, 26723346 - 26723197
Alignment:
Q  15 atgaagaagaagcatagtctttagagaagacaacaatggcaattcttgagttttcaatgctcttgaagagcgaaggtgtgattttatcacctctctgaag 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||| |||||||||||||||    
T  26723346 atgaagaagaagcatagtctttagagaagacaacaatggcaattcttgagttttcaatgc-------gagcgaaggtgtgatttcatcacctctctgaag 26723254  T
Q  115 ctccttgtaatcaatgaaggtgttgattcctttgtcagaaagagctttatagagatt 171  Q
    |||||||| ||||||||||||   || |||||||||| |||||||||||||||||||    
T  26723253 ctccttgtcatcaatgaaggttcggactcctttgtcacaaagagctttatagagatt 26723197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 37 - 219
Target Start/End: Complemental strand, 26811586 - 26811404
Alignment:
Q  37 agagaagacaacaatggcaattcttgagttttcaatgctcttgaagagcgaaggtgtgattttatcacctctctgaagctccttgtaatcaatgaaggtg 136  Q
    |||||| |||| ||||||||| || |||| |||||||||||||| |||||||||||||||||  |||||||||||||||||||||| ||||||||||||     
T  26811586 agagaatacaataatggcaatcctagagtgttcaatgctcttgaggagcgaaggtgtgatttcgtcacctctctgaagctccttgtcatcaatgaaggtt 26811487  T
Q  137 ttgattcctttgtcagaaagagctttatagagattaccagtaaaaccgaatcgagtgtcggtacccctgaaactaatgaacac 219  Q
      ||||||||||||| |||||||||||||||||| ||| || || ||  ||||||||||| ||||||||||||||||||||||    
T  26811486 cggattcctttgtcacaaagagctttatagagatgaccggtgaagccagatcgagtgtcgatacccctgaaactaatgaacac 26811404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 17 - 216
Target Start/End: Complemental strand, 26959263 - 26959063
Alignment:
Q  17 gaagaagaagcatagtctttagagaagacaacaatggcaattcttgagttttcaatgctcttgaaga-gcgaaggtgtgattttatcacctctctgaagc 115  Q
    |||||||||||||| || |||||||| || | ||||||||| || |||| ||||||||||||  ||| ||||||||||||||| ||| ||| | | ||||    
T  26959263 gaagaagaagcatattccttagagaaaacgataatggcaatcctcgagtcttcaatgctctttgagaagcgaaggtgtgatttcatccccttttttaagc 26959164  T
Q  116 tccttgtaatcaatgaaggtgttgattcctttgtcagaaagagctttatagagattaccagtaaaaccgaatcgagtgtcggtacccctgaaactaatga 215  Q
    || |||| |||||||||||||| |||||||||||||||||||||||||||||| ||||| || |||| ||||||||||||||| ||||||||||||||||    
T  26959163 tctttgtcatcaatgaaggtgtcgattcctttgtcagaaagagctttatagaggttaccggtgaaactgaatcgagtgtcggtgcccctgaaactaatga 26959064  T
Q  216 a 216  Q
    |    
T  26959063 a 26959063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 37 - 219
Target Start/End: Complemental strand, 26848737 - 26848555
Alignment:
Q  37 agagaagacaacaatggcaattcttgagttttcaatgctcttgaagagcgaaggtgtgattttatcacctctctgaagctccttgtaatcaatgaaggtg 136  Q
    |||||| |||| ||||| ||| || |||| ||||||| |||||| ||||||||||||||| | |||||| |||||||| ||||||| ||||||||||||     
T  26848737 agagaatacaagaatggaaatcctcgagtcttcaatgttcttgaggagcgaaggtgtgatctcatcaccactctgaagatccttgtcatcaatgaaggtt 26848638  T
Q  137 ttgattcctttgtcagaaagagctttatagagattaccagtaaaaccgaatcgagtgtcggtacccctgaaactaatgaacac 219  Q
      |||||| |||||||||||||||||||||||||||||||| |||| ||||| ||||||||| ||||||||||||||||||||    
T  26848637 cggattccattgtcagaaagagctttatagagattaccagtgaaactgaatctagtgtcggtgcccctgaaactaatgaacac 26848555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 15 - 219
Target Start/End: Original strand, 27665205 - 27665409
Alignment:
Q  15 atgaagaagaagcatagtctttagagaagacaacaatggcaattcttgagttttcaatgctcttgaagagcgaaggtgtgattttatcacctctctgaag 114  Q
    ||||||||| ||||||||  |||||||| | || ||||||||| || || | ||||||||||||   ||| |||||||||||||  |||||  |  ||||    
T  27665205 atgaagaagtagcatagttcttagagaatataataatggcaatcctcgattcttcaatgctcttccggagtgaaggtgtgatttcgtcaccagttggaag 27665304  T
Q  115 ctccttgtaatcaatgaaggtgttgattcctttgtcagaaagagctttatagagattaccagtaaaaccgaatcgagtgtcggtacccctgaaactaatg 214  Q
    |||||||| |||||||||||||| ||||||||||||||||||||| |||||||| ||||| || ||||| ||||||||||||||||||||||||||||||    
T  27665305 ctccttgtcatcaatgaaggtgtggattcctttgtcagaaagagccttatagaggttaccggtgaaaccaaatcgagtgtcggtacccctgaaactaatg 27665404  T
Q  215 aacac 219  Q
    |||||    
T  27665405 aacac 27665409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 82 - 219
Target Start/End: Complemental strand, 27214449 - 27214312
Alignment:
Q  82 gagcgaaggtgtgattttatcacctctctgaagctccttgtaatcaatgaaggtgttgattcctttgtcagaaagagctttatagagattaccagtaaaa 181  Q
    |||||||| ||||||||  |||||||||||||||||||||| ||||||||||||   ||||||||||||| |||||||||||||||||||||| || |||    
T  27214449 gagcgaagatgtgatttcgtcacctctctgaagctccttgtcatcaatgaaggttcggattcctttgtcacaaagagctttatagagattaccggtgaaa 27214350  T
Q  182 ccgaatcgagtgtcggtacccctgaaactaatgaacac 219  Q
    |||  |||||||||||||||||||||||||||||||||    
T  27214349 ccgtgtcgagtgtcggtacccctgaaactaatgaacac 27214312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 82 - 219
Target Start/End: Original strand, 27234779 - 27234916
Alignment:
Q  82 gagcgaaggtgtgattttatcacctctctgaagctccttgtaatcaatgaaggtgttgattcctttgtcagaaagagctttatagagattaccagtaaaa 181  Q
    |||||||| ||||||||  |||||||||||||||||||||| ||||||||||||   ||||||||||||| |||||||||||||||||||||| || |||    
T  27234779 gagcgaagatgtgatttcgtcacctctctgaagctccttgtcatcaatgaaggttcggattcctttgtcacaaagagctttatagagattaccggtgaaa 27234878  T
Q  182 ccgaatcgagtgtcggtacccctgaaactaatgaacac 219  Q
    |||  |||||||||||||||||||||||||||||||||    
T  27234879 ccgtgtcgagtgtcggtacccctgaaactaatgaacac 27234916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 15 - 110
Target Start/End: Complemental strand, 24715684 - 24715586
Alignment:
Q  15 atgaagaagaagcatagtct---ttagagaagacaacaatggcaattcttgagttttcaatgctcttgaagagcgaaggtgtgattttatcacctctct 110  Q
    ||||||||||||||||||||   ||||||||||||| |||||||||| | |||| ||| |||||||||| |||||||| |||||||| |||||||||||    
T  24715684 atgaagaagaagcatagtctaatttagagaagacaataatggcaattttcgagtcttcgatgctcttgaggagcgaagatgtgatttcatcacctctct 24715586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 76 - 220
Target Start/End: Original strand, 27698643 - 27698787
Alignment:
Q  76 cttgaagagcgaaggtgtgattttatcacctctctgaagctccttgtaatcaatgaaggtgttgattcctttgtcagaaagagctttatagagattacca 175  Q
    ||||| ||| || |||||||||| ||| ||||| ||||| || |||| |||||||||||| | |||||| ||||||| |||||| || |||||||| ||     
T  27698643 cttgaggagtgatggtgtgatttcatctcctctttgaagatcattgtcatcaatgaaggtatggattcccttgtcagtaagagccttgtagagatttccg 27698742  T
Q  176 gtaaaaccgaatcgagtgtcggtacccctgaaactaatgaacact 220  Q
    |||||||||   |||||||| || ||||| ||||| |||||||||    
T  27698743 gtaaaaccgtgccgagtgtcagtgcccctaaaactgatgaacact 27698787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 76 - 220
Target Start/End: Original strand, 27724994 - 27725138
Alignment:
Q  76 cttgaagagcgaaggtgtgattttatcacctctctgaagctccttgtaatcaatgaaggtgttgattcctttgtcagaaagagctttatagagattacca 175  Q
    ||||| ||| || |||||||||| ||| ||||| ||||| || |||| |||||||||||| | |||||| ||||||| |||||| || |||||||| ||     
T  27724994 cttgaggagtgatggtgtgatttcatctcctctttgaagatcattgtcatcaatgaaggtatggattcccttgtcagtaagagccttgtagagatttccg 27725093  T
Q  176 gtaaaaccgaatcgagtgtcggtacccctgaaactaatgaacact 220  Q
    |||||||||   |||||||| || ||||| ||||||| |||||||    
T  27725094 gtaaaaccgtgccgagtgtcagtgcccctaaaactaaggaacact 27725138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 76 - 220
Target Start/End: Complemental strand, 28781177 - 28781033
Alignment:
Q  76 cttgaagagcgaaggtgtgattttatcacctctctgaagctccttgtaatcaatgaaggtgttgattcctttgtcagaaagagctttatagagattacca 175  Q
    ||||| ||| || |||||||||| ||| ||||| ||||| || |||| |||||||||||| |||||||| ||||||| |||||| || |||||||| ||     
T  28781177 cttgaggagtgatggtgtgatttcatctcctctttgaagatcattgtcatcaatgaaggttttgattcccttgtcagtaagagccttgtagagattgccg 28781078  T
Q  176 gtaaaaccgaatcgagtgtcggtacccctgaaactaatgaacact 220  Q
    |||||||||   |||||||| || ||||| ||||| | |||||||    
T  28781077 gtaaaaccgtggcgagtgtcagtgcccctaaaactgaggaacact 28781033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 76 - 220
Target Start/End: Complemental strand, 28786316 - 28786172
Alignment:
Q  76 cttgaagagcgaaggtgtgattttatcacctctctgaagctccttgtaatcaatgaaggtgttgattcctttgtcagaaagagctttatagagattacca 175  Q
    ||||| ||| || |||||||||| ||| ||||| ||||| || |||| |||||||||||| |||||||| ||||||| |||||| || |||||||| ||     
T  28786316 cttgaggagtgatggtgtgatttcatctcctctttgaagatcattgtcatcaatgaaggttttgattcccttgtcagtaagagccttgtagagatttccg 28786217  T
Q  176 gtaaaaccgaatcgagtgtcggtacccctgaaactaatgaacact 220  Q
    |||||||||   |||||||| || ||||| ||||| | |||||||    
T  28786216 gtaaaaccgtggcgagtgtcagtgcccctaaaactgaggaacact 28786172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 76 - 220
Target Start/End: Complemental strand, 28792437 - 28792293
Alignment:
Q  76 cttgaagagcgaaggtgtgattttatcacctctctgaagctccttgtaatcaatgaaggtgttgattcctttgtcagaaagagctttatagagattacca 175  Q
    ||||| ||| || |||||||||| ||| ||||| ||||| || |||| |||||||||||| |||||||| ||||||| |||||| || |||||||| ||     
T  28792437 cttgaggagtgatggtgtgatttcatctcctctttgaagatcattgtcatcaatgaaggttttgattcccttgtcagtaagagccttgtagagatttccg 28792338  T
Q  176 gtaaaaccgaatcgagtgtcggtacccctgaaactaatgaacact 220  Q
    |||||||||   |||||||| || ||||| ||||| | |||||||    
T  28792337 gtaaaaccgtggcgagtgtcagtgcccctaaaactgaggaacact 28792293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 67 - 220
Target Start/End: Complemental strand, 26802489 - 26802336
Alignment:
Q  67 ttcaatgctcttgaagagcgaaggtgtgattttatcacctctctgaagctccttgtaatcaatgaaggtgttgattcctttgtcagaaagagctttatag 166  Q
    |||||||  ||||| ||| || |||||||||| ||| ||||| ||||| || |||| |||||||||||| | |||||| ||||||  |||||| || |||    
T  26802489 ttcaatggccttgatgagtgatggtgtgatttcatctcctctttgaagatcattgtcatcaatgaaggtatggattcccttgtcaataagagccttgtag 26802390  T
Q  167 agattaccagtaaaaccgaatcgagtgtcggtacccctgaaactaatgaacact 220  Q
    ||||| || ||||||||| | |||||||| || ||||| ||||| | |||||||    
T  26802389 agattgcccgtaaaaccgtaccgagtgtcagtgcccctaaaactgaggaacact 26802336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 76 - 220
Target Start/End: Complemental strand, 27229270 - 27229126
Alignment:
Q  76 cttgaagagcgaaggtgtgattttatcacctctctgaagctccttgtaatcaatgaaggtgttgattcctttgtcagaaagagctttatagagattacca 175  Q
    ||||| ||| || ||||||||||  || ||||| ||||| || |||| |||||||||||| | |||||| ||||||| |||||| || |||||||| ||     
T  27229270 cttgacgagtgatggtgtgatttcgtctcctctttgaagatcattgtcatcaatgaaggtatggattcccttgtcagtaagagccttgtagagattgccg 27229171  T
Q  176 gtaaaaccgaatcgagtgtcggtacccctgaaactaatgaacact 220  Q
    |||||||||   |||||||| || ||||| ||||||| |||||||    
T  27229170 gtaaaaccgtgccgagtgtcagtgcccctaaaactaaggaacact 27229126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 89 - 220
Target Start/End: Original strand, 27604867 - 27604998
Alignment:
Q  89 ggtgtgattttatcacctctctgaagctccttgtaatcaatgaaggtgttgattcctttgtcagaaagagctttatagagattaccagtaaaaccgaatc 188  Q
    |||||||||| ||| |||||  |||| || || | |||||||||||| |  ||||| ||||||| |||||| || |||||||| || ||||||||| |||    
T  27604867 ggtgtgatttcatctcctcttcgaagatcattttcatcaatgaaggtatgaattcccttgtcagtaagagccttgtagagattgccggtaaaaccgtatc 27604966  T
Q  189 gagtgtcggtacccctgaaactaatgaacact 220  Q
    ||||||| || ||||| ||||||| |||||||    
T  27604967 gagtgtcagtgcccctaaaactaaggaacact 27604998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 76 - 220
Target Start/End: Original strand, 27611151 - 27611295
Alignment:
Q  76 cttgaagagcgaaggtgtgattttatcacctctctgaagctccttgtaatcaatgaaggtgttgattcctttgtcagaaagagctttatagagattacca 175  Q
    ||||| ||| || |||||||||| ||| |||||  |||| || |||| |||||||||||| | |||||| ||||||| |||||| || |||||||| ||     
T  27611151 cttgaggagtgatggtgtgatttcatctcctcttggaagatcattgtcatcaatgaaggtatggattcccttgtcagtaagagccttgtagagatttccg 27611250  T
Q  176 gtaaaaccgaatcgagtgtcggtacccctgaaactaatgaacact 220  Q
    |||||||||   |||||||| || ||||| ||||| | |||||||    
T  27611251 gtaaaaccgtggcgagtgtcagtgcccctaaaactgaggaacact 27611295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 76 - 220
Target Start/End: Original strand, 27718528 - 27718672
Alignment:
Q  76 cttgaagagcgaaggtgtgattttatcacctctctgaagctccttgtaatcaatgaaggtgttgattcctttgtcagaaagagctttatagagattacca 175  Q
    ||||| ||| || |||||||||| ||| ||||| ||||| || |||| |||||||||||| | |||||| ||||||| |||||| || |||||||| ||     
T  27718528 cttgaggagtgatggtgtgatttcatctcctctttgaagatcattgtcatcaatgaaggtatggattcccttgtcagtaagagccttgtagagatttccg 27718627  T
Q  176 gtaaaaccgaatcgagtgtcggtacccctgaaactaatgaacact 220  Q
    ||||||| |   |||||||| || ||||| ||||| | |||||||    
T  27718628 gtaaaactgtgccgagtgtcagtgcccctaaaactgaggaacact 27718672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 67 - 219
Target Start/End: Complemental strand, 28234611 - 28234459
Alignment:
Q  67 ttcaatgctcttgaagagcgaaggtgtgattttatcacctctctgaagctccttgtaatcaatgaaggtgttgattcctttgtcagaaagagctttatag 166  Q
    |||||||  |||||| || || ||||| |||| ||| ||||  ||||||||| ||| |||||||||||||| |||||| |||| | |||||||| |||||    
T  28234611 ttcaatggccttgaaaagtgatggtgttatttcatctcctccttgaagctccctgtcatcaatgaaggtgtggattcccttgtgacaaagagctctatag 28234512  T
Q  167 agattaccagtaaaaccgaatcgagtgtcggtacccctgaaactaatgaacac 219  Q
    |||||  | ||||||||  | ||||||||  |||| || ||||||| ||||||    
T  28234511 agattttcggtaaaaccatagcgagtgtcactacctctaaaactaaggaacac 28234459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 89 - 184
Target Start/End: Original strand, 27531359 - 27531454
Alignment:
Q  89 ggtgtgattttatcacctctctgaagctccttgtaatcaatgaaggtgttgattcctttgtcagaaagagctttatagagattaccagtaaaaccg 184  Q
    |||||||||| ||| ||||| ||||| || |||| |||||||||||| | |||||| ||||||| |||||| || |||||||| || |||||||||    
T  27531359 ggtgtgatttcatctcctctttgaagatcattgtcatcaatgaaggtatagattcccttgtcagtaagagccttgtagagatttccggtaaaaccg 27531454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 89 - 195
Target Start/End: Original strand, 27593182 - 27593288
Alignment:
Q  89 ggtgtgattttatcacctctctgaagctccttgtaatcaatgaaggtgttgattcctttgtcagaaagagctttatagagattaccagtaaaaccgaatc 188  Q
    |||||||||| ||  ||||| |||||  | |||| ||||||||||||||||||||| ||||||| |||||| || |||||||| || || |||||| | |    
T  27593182 ggtgtgatttcatttcctctttgaagaccattgtcatcaatgaaggtgttgattcccttgtcagtaagagccttgtagagattgccggtgaaaccgtacc 27593281  T
Q  189 gagtgtc 195  Q
    |||||||    
T  27593282 gagtgtc 27593288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 89 - 195
Target Start/End: Complemental strand, 27678971 - 27678865
Alignment:
Q  89 ggtgtgattttatcacctctctgaagctccttgtaatcaatgaaggtgttgattcctttgtcagaaagagctttatagagattaccagtaaaaccgaatc 188  Q
    |||||||||| ||| ||||| |||||  | || | ||||||||||||||||||||| ||||||| |||||| || |||||||| || || |||||| | |    
T  27678971 ggtgtgatttcatctcctctttgaagaccattcttatcaatgaaggtgttgattcccttgtcagtaagagccttgtagagattcccggtgaaaccgtacc 27678872  T
Q  189 gagtgtc 195  Q
    |||||||    
T  27678871 gagtgtc 27678865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 124 - 220
Target Start/End: Complemental strand, 26622966 - 26622870
Alignment:
Q  124 atcaatgaaggtgttgattcctttgtcagaaagagctttatagagattaccagtaaaaccgaatcgagtgtcggtacccctgaaactaatgaacact 220  Q
    |||||||||||||| |||||| ||||||| |||||| || |||||||| ||||| |||||| | ||||||||  | || |||||||| | |||||||    
T  26622966 atcaatgaaggtgtggattcccttgtcagtaagagccttgtagagatttccagtgaaaccgtaccgagtgtcactgcctctgaaacttaggaacact 26622870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 124 - 220
Target Start/End: Complemental strand, 26728944 - 26728848
Alignment:
Q  124 atcaatgaaggtgttgattcctttgtcagaaagagctttatagagattaccagtaaaaccgaatcgagtgtcggtacccctgaaactaatgaacact 220  Q
    |||||||||||||| |||||| ||||||| |||||| || |||||||| ||||| |||||| | ||||||||  | || |||||||| | |||||||    
T  26728944 atcaatgaaggtgtggattcccttgtcagtaagagccttgtagagatttccagtgaaaccgtaccgagtgtcactgcctctgaaacttaggaacact 26728848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 89 - 212
Target Start/End: Complemental strand, 31284313 - 31284190
Alignment:
Q  89 ggtgtgattttatcacctctctgaagctccttgtaatcaatgaaggtgttgattcctttgtcagaaagagctttatagagattaccagtaaaaccgaatc 188  Q
    |||||||||| ||| ||||| ||||| ||  | | |||||||||||||| |||||| ||||||| |||||| || |||||||| || || |||||  | |    
T  31284313 ggtgtgatttcatcccctctttgaagttcactatcatcaatgaaggtgtggattcccttgtcagtaagagccttgtagagattgccggtgaaaccatacc 31284214  T
Q  189 gagtgtcggtacccctgaaactaa 212  Q
    |||||||  | |||||||||||||    
T  31284213 gagtgtcacttcccctgaaactaa 31284190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 89 - 184
Target Start/End: Original strand, 27338227 - 27338322
Alignment:
Q  89 ggtgtgattttatcacctctctgaagctccttgtaatcaatgaaggtgttgattcctttgtcagaaagagctttatagagattaccagtaaaaccg 184  Q
    |||||| ||| ||| ||||| | ||| || |||| |||||||||||| |||||||| ||||||  |||||| || |||||||| || |||||||||    
T  27338227 ggtgtgctttcatctcctctttcaagatcgttgtcatcaatgaaggttttgattcccttgtcaataagagccttgtagagattgccggtaaaaccg 27338322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 89 - 184
Target Start/End: Original strand, 27398967 - 27399062
Alignment:
Q  89 ggtgtgattttatcacctctctgaagctccttgtaatcaatgaaggtgttgattcctttgtcagaaagagctttatagagattaccagtaaaaccg 184  Q
    |||||| ||| ||| ||||| | ||| || |||| |||||||||||| |||||||| ||||||  |||||| || |||||||| || |||||||||    
T  27398967 ggtgtgctttcatctcctctttcaagatcgttgtcatcaatgaaggttttgattcccttgtcaataagagccttgtagagattgccggtaaaaccg 27399062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 125 - 204
Target Start/End: Original strand, 28098567 - 28098646
Alignment:
Q  125 tcaatgaaggtgttgattcctttgtcagaaagagctttatagagattaccagtaaaaccgaatcgagtgtcggtacccct 204  Q
    ||||||||||||  || ||||  |||| |||||||||| |||||||| |||||||||||  | ||||||||||| |||||    
T  28098567 tcaatgaaggtgcggactcctccgtcacaaagagctttgtagagatttccagtaaaaccataccgagtgtcggtgcccct 28098646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 181
Target Start/End: Complemental strand, 26055949 - 26055859
Alignment:
Q  91 tgtgattttatcacctctctgaagctccttgtaatcaatgaaggtgttgattcctttgtcagaaagagctttatagagattaccagtaaaa 181  Q
    |||||||| ||| ||||| ||||| || || | ||||||||| || || ||||| ||||||  |||||| |||||||||||||| ||||||    
T  26055949 tgtgatttcatctcctctttgaagatcattttcatcaatgaaagtattaattcccttgtcaacaagagccttatagagattaccggtaaaa 26055859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 181
Target Start/End: Complemental strand, 26075919 - 26075829
Alignment:
Q  91 tgtgattttatcacctctctgaagctccttgtaatcaatgaaggtgttgattcctttgtcagaaagagctttatagagattaccagtaaaa 181  Q
    |||||||| ||| ||||| ||||| || || | ||||||||| || || ||||| ||||||  |||||| |||||||||||||| ||||||    
T  26075919 tgtgatttcatctcctctttgaagatcattttcatcaatgaaagtattaattcccttgtcaacaagagccttatagagattaccggtaaaa 26075829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 195
Target Start/End: Original strand, 26893645 - 26893739
Alignment:
Q  101 tcacctctctgaagctccttgtaatcaatgaaggtgttgattcctttgtcagaaagagctttatagagattaccagtaaaaccgaatcgagtgtc 195  Q
    |||||||| ||||||||  | | ||||||||||||||  |||||  | ||| ||||||||||||| |||| ||| |||||||| || ||||||||    
T  26893645 tcacctctatgaagctctgtatcatcaatgaaggtgtgaattccactatcacaaagagctttataaagatgacccgtaaaaccaaaacgagtgtc 26893739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 67 - 184
Target Start/End: Complemental strand, 26646526 - 26646409
Alignment:
Q  67 ttcaatgctcttgaagagcgaaggtgtgattttatcacctctctgaagctccttgtaatcaatgaaggtgttgattcctttgtcagaaagagctttatag 166  Q
    |||||||  ||||| ||| || |||||||||| ||| ||||||| ||| ||    | ||||||||||||||  ||||| ||||||| |||||| || |||    
T  26646526 ttcaatggccttgatgagtgatggtgtgatttcatctcctctcttaagatcacaatcatcaatgaaggtgtgaattcccttgtcagtaagagccttgtag 26646427  T
Q  167 agattaccagtaaaaccg 184  Q
    ||||  ||||||||||||    
T  26646426 agatgtccagtaaaaccg 26646409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 67 - 184
Target Start/End: Complemental strand, 26752494 - 26752377
Alignment:
Q  67 ttcaatgctcttgaagagcgaaggtgtgattttatcacctctctgaagctccttgtaatcaatgaaggtgttgattcctttgtcagaaagagctttatag 166  Q
    |||||||  ||||| ||| || |||||||||| ||| ||||||| ||| ||    | ||||||||||||||  ||||| ||||||| |||||| || |||    
T  26752494 ttcaatggccttgatgagtgatggtgtgatttcatctcctctcttaagatcacaatcatcaatgaaggtgtgaattcccttgtcagtaagagccttgtag 26752395  T
Q  167 agattaccagtaaaaccg 184  Q
    ||||  ||||||||||||    
T  26752394 agatgtccagtaaaaccg 26752377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 220
Target Start/End: Complemental strand, 26884153 - 26884057
Alignment:
Q  124 atcaatgaaggtgttgattcctttgtcagaaagagctttatagagattaccagtaaaaccgaatcgagtgtcggtacccctgaaactaatgaacact 220  Q
    |||||||||||||| |||||| |||| || |||||| || |||||||| ||||| |||||  | ||||||||  | || |||||||| | |||||||    
T  26884153 atcaatgaaggtgtggattcccttgttagtaagagccttgtagagatttccagtgaaaccataccgagtgtcacttcctctgaaactgaggaacact 26884057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 15 - 219
Target Start/End: Original strand, 17993772 - 17993976
Alignment:
Q  15 atgaagaagaagcatagtctttagagaagacaacaatggcaattcttgagttttcaatgctcttgaagagcgaaggtgtgattttatcacctctctgaag 114  Q
    ||||||||||||||||||| || |||||||| | ||| ||||||||||||| |||||||||||||| |||||| |||||||||| |||||||||||||||    
T  17993772 atgaagaagaagcatagtcctttgagaagacgataatcgcaattcttgagtcttcaatgctcttgaggagcgacggtgtgatttcatcacctctctgaag 17993871  T
Q  115 ctccttgtaatcaatgaaggtgttgattcctttgtcagaaagagctttatagagattaccagtaaaaccgaatcgagtgtcggtacccctgaaactaatg 214  Q
    ||| |||| ||| ||||||||    ||||| ||||||||||||||||||||||||||||| || |||||  ||||||| |||||||||||||||||||||    
T  17993872 ctctttgtcatcgatgaaggttcgaattcccttgtcagaaagagctttatagagattaccggtgaaaccatatcgagtatcggtacccctgaaactaatg 17993971  T
Q  215 aacac 219  Q
    |||||    
T  17993972 aacac 17993976  T

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Target: scaffold1254 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold1254
Description:

Target: scaffold1254; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 76 - 220
Target Start/End: Original strand, 66 - 210
Alignment:
Q  76 cttgaagagcgaaggtgtgattttatcacctctctgaagctccttgtaatcaatgaaggtgttgattcctttgtcagaaagagctttatagagattacca 175  Q
    ||||| ||| || |||||||||| ||| ||||| ||||| || |||| |||||||||||| |||||||| ||||||| |||||| || |||||||| ||     
T  66 cttgaggagtgatggtgtgatttcatctcctctttgaagatcattgtcatcaatgaaggttttgattcccttgtcagtaagagccttgtagagattgccg 165  T
Q  176 gtaaaaccgaatcgagtgtcggtacccctgaaactaatgaacact 220  Q
    |||||||||   |||||||| || ||||| ||||||| |||||||    
T  166 gtaaaaccgtggcgagtgtcagtgcccctaaaactaaggaacact 210  T

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Target: scaffold0419 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 76 - 220
Target Start/End: Complemental strand, 7563 - 7419
Alignment:
Q  76 cttgaagagcgaaggtgtgattttatcacctctctgaagctccttgtaatcaatgaaggtgttgattcctttgtcagaaagagctttatagagattacca 175  Q
    ||||| ||| || |||||||||| ||| ||||| ||||| || |||| |||||||||||| |||||||| ||||||| |||||| || |||||||| ||     
T  7563 cttgaggagtgatggtgtgatttcatctcctctttgaagatcattgtcatcaatgaaggttttgattcccttgtcagtaagagccttgtagagattgccg 7464  T
Q  176 gtaaaaccgaatcgagtgtcggtacccctgaaactaatgaacact 220  Q
    |||||||||   |||||||| || ||||| ||||||| |||||||    
T  7463 gtaaaaccgtggcgagtgtcagtgcccctaaaactaaggaacact 7419  T

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Target: scaffold0349 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 76 - 220
Target Start/End: Original strand, 3571 - 3715
Alignment:
Q  76 cttgaagagcgaaggtgtgattttatcacctctctgaagctccttgtaatcaatgaaggtgttgattcctttgtcagaaagagctttatagagattacca 175  Q
    ||||| ||| || |||||||||| ||| ||||| ||||| || |||| |||||||||||| | |||||| ||||||| |||||| || |||||||| ||     
T  3571 cttgaggagtgatggtgtgatttcatctcctctttgaagatcattgtcatcaatgaaggtatggattcccttgtcagtaagagccttgtagagatttccg 3670  T
Q  176 gtaaaaccgaatcgagtgtcggtacccctgaaactaatgaacact 220  Q
    |||||||||   |||||||| || ||||| ||||||| |||||||    
T  3671 gtaaaaccgtgccgagtgtcagtgcccctaaaactaaggaacact 3715  T

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Target: scaffold0349; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 76 - 220
Target Start/End: Original strand, 14504 - 14648
Alignment:
Q  76 cttgaagagcgaaggtgtgattttatcacctctctgaagctccttgtaatcaatgaaggtgttgattcctttgtcagaaagagctttatagagattacca 175  Q
    ||||| ||| || |||||||||| ||| ||||| ||||| || |||| |||||||||||| | |||||| ||||||| |||||| || |||||||| ||     
T  14504 cttgaggagtgatggtgtgatttcatctcctctttgaagatcattgtcatcaatgaaggtatggattcccttgtcagtaagagccttgtagagatttccg 14603  T
Q  176 gtaaaaccgaatcgagtgtcggtacccctgaaactaatgaacact 220  Q
    |||||||||   |||||||| || ||||| ||||| |||||||||    
T  14604 gtaaaaccgtgccgagtgtcagtgcccctaaaactgatgaacact 14648  T

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Target: scaffold0277 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 76 - 220
Target Start/End: Original strand, 13781 - 13925
Alignment:
Q  76 cttgaagagcgaaggtgtgattttatcacctctctgaagctccttgtaatcaatgaaggtgttgattcctttgtcagaaagagctttatagagattacca 175  Q
    ||||| ||| || |||||||||| ||| ||||| ||||| || |||| |||||||||||| |||||||| ||||||| |||||| || |||||||| ||     
T  13781 cttgaggagtgatggtgtgatttcatctcctctttgaagatcattgtcatcaatgaaggttttgattcccttgtcagtaagagccttgtagagattgccg 13880  T
Q  176 gtaaaaccgaatcgagtgtcggtacccctgaaactaatgaacact 220  Q
    |||||||||   |||||||| || ||||| ||||| | |||||||    
T  13881 gtaaaaccgtggcgagtgtcagtgcccctaaaactgaggaacact 13925  T

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Target: scaffold0277; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 89 - 184
Target Start/End: Original strand, 4833 - 4928
Alignment:
Q  89 ggtgtgattttatcacctctctgaagctccttgtaatcaatgaaggtgttgattcctttgtcagaaagagctttatagagattaccagtaaaaccg 184  Q
    |||||||||| ||| ||||| ||||| || |||| |||||||||||| |||||||| ||||||| |||||| || |||||||| || |||||||||    
T  4833 ggtgtgatttcatctcctctttgaagatcattgtcatcaatgaaggttttgattcccttgtcagtaagagccttgtagagatttccggtaaaaccg 4928  T

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Target: scaffold0038 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 67 - 219
Target Start/End: Complemental strand, 34772 - 34620
Alignment:
Q  67 ttcaatgctcttgaagagcgaaggtgtgattttatcacctctctgaagctccttgtaatcaatgaaggtgttgattcctttgtcagaaagagctttatag 166  Q
    |||||||  |||||| || || ||||| |||| ||| ||||  ||||||||| ||| |||||||||||||| |||||| |||| | |||||||| |||||    
T  34772 ttcaatggccttgaaaagtgatggtgttatttcatctcctccttgaagctccctgtcatcaatgaaggtgtggattcccttgtgacaaagagctctatag 34673  T
Q  167 agattaccagtaaaaccgaatcgagtgtcggtacccctgaaactaatgaacac 219  Q
    |||||  | ||||||||  | ||||||||  |||| || ||||||| ||||||    
T  34672 agattttcggtaaaaccatagcgagtgtcactacctctaaaactaaggaacac 34620  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 89 - 181
Target Start/End: Complemental strand, 16689036 - 16688944
Alignment:
Q  89 ggtgtgattttatcacctctctgaagctccttgtaatcaatgaaggtgttgattcctttgtcagaaagagctttatagagattaccagtaaaa 181  Q
    ||||||||||| |||||||||||||| ||||||| ||||||||||     |||||| |||||| | |||||||| || |||||||||||||||    
T  16689036 ggtgtgattttgtcacctctctgaagttccttgtcatcaatgaagacacggattcccttgtcacatagagctttgtacagattaccagtaaaa 16688944  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 124 - 184
Target Start/End: Original strand, 18679751 - 18679811
Alignment:
Q  124 atcaatgaaggtgttgattcctttgtcagaaagagctttatagagattaccagtaaaaccg 184  Q
    |||||||||||||| |||||||||||||| |||||| || ||||||| |||||||||||||    
T  18679751 atcaatgaaggtgtggattcctttgtcagtaagagccttgtagagatgaccagtaaaaccg 18679811  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 124 - 220
Target Start/End: Original strand, 18699584 - 18699680
Alignment:
Q  124 atcaatgaaggtgttgattcctttgtcagaaagagctttatagagattaccagtaaaaccgaatcgagtgtcggtacccctgaaactaatgaacact 220  Q
    |||||||||||||| |||||| ||||||| ||||||||| |||||||  ||||||||||||   |||||||| || |||||||| || | |||||||    
T  18699584 atcaatgaaggtgtggattcccttgtcagtaagagctttgtagagatggccagtaaaaccgtcacgagtgtcagtgcccctgaagctgaggaacact 18699680  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 104 - 212
Target Start/End: Original strand, 5091131 - 5091239
Alignment:
Q  104 cctctctgaagctccttgtaatcaatgaaggtgttgattcctttgtcagaaagagctttatagagattaccagtaaaaccgaatcgagtgtcggtacccc 203  Q
    |||| |||||||||  ||| ||||||||||||||  ||||| ||| ||   ||||||| ||||||||| |||||||||||| | ||||||||||| || |    
T  5091131 cctcgctgaagctctctgtcatcaatgaaggtgtgaattcccttgacacgtagagcttcatagagatttccagtaaaaccgtaacgagtgtcggtgcctc 5091230  T
Q  204 tgaaactaa 212  Q
    | |||||||    
T  5091231 taaaactaa 5091239  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 124 - 184
Target Start/End: Original strand, 18655661 - 18655721
Alignment:
Q  124 atcaatgaaggtgttgattcctttgtcagaaagagctttatagagattaccagtaaaaccg 184  Q
    |||||||||||||| |||||| ||||||| ||||||||| |||||||  ||||||||||||    
T  18655661 atcaatgaaggtgtggattcccttgtcagtaagagctttgtagagatgcccagtaaaaccg 18655721  T

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Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 124 - 184
Target Start/End: Original strand, 18724269 - 18724329
Alignment:
Q  124 atcaatgaaggtgttgattcctttgtcagaaagagctttatagagattaccagtaaaaccg 184  Q
    |||||||||||||| |||||| ||||||| |||||| || ||||||| |||||||||||||    
T  18724269 atcaatgaaggtgtggattcccttgtcagtaagagccttgtagagatgaccagtaaaaccg 18724329  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 124 - 184
Target Start/End: Original strand, 18731688 - 18731748
Alignment:
Q  124 atcaatgaaggtgttgattcctttgtcagaaagagctttatagagattaccagtaaaaccg 184  Q
    |||||||||||||| |||||| ||||||| ||||||| | |||||||  ||||||||||||    
T  18731688 atcaatgaaggtgtggattcccttgtcagtaagagctctgtagagatggccagtaaaaccg 18731748  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 15 - 183
Target Start/End: Complemental strand, 31903950 - 31903782
Alignment:
Q  15 atgaagaagaagcatagtctttagagaagacaacaatggcaattcttgagttttcaatgctcttgaagagcgaaggtgtgattttatcacctctctgaag 114  Q
    |||||||||||||||||| ||||||||  |||| ||||||||| || || | ||||||   ||  || || || |||||||||| ||  ||||| |||||    
T  31903950 atgaagaagaagcatagtttttagagagcacaataatggcaatcctagactcttcaattgcctctaaaagtgatggtgtgatttcatgtcctctttgaag 31903851  T
Q  115 ctccttgtaatcaatgaaggtgttgattcctttgtcagaaagagctttatagagattaccagtaaaacc 183  Q
     || |  |  ||||| ||||||| |||||| || ||| |||||||||| |||||||| |||||||||||    
T  31903850 ttcttcatcgtcaataaaggtgtggattcccttatcataaagagctttgtagagatttccagtaaaacc 31903782  T

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