View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5056_high_1_N (Length: 378)
Name: NF5056_high_1_N
Description: NF5056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5056_high_1_N |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 149 - 378
Target Start/End: Original strand, 34899746 - 34899975
Alignment:
| Q |
149 |
gtcagtgatatcatctgcacaaattcacataaaattttgtagttggaagatacatacctttcatgtttggtgagaatggaaggaaaattttgagactata |
248 |
Q |
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| T |
34899746 |
gtcagtgatatcatctgcacaaattcacataaaattttgtagttggaagatacatacctttcatgtttggtgagaatggaaggaaaattttgagactata |
34899845 |
T |
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| Q |
249 |
aggttgcatacacgcaggggaagacacaatttagcttttgttgacatcaaatagcgagagaagaactaaagagagatgtgtttatatgcatataggtaaa |
348 |
Q |
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| T |
34899846 |
aggttgcatacacgcaggggaagacacaatttagcttttgttgacatcaaatagcgagagaagaactaaagagagatgtgtttatatgcatataggtaaa |
34899945 |
T |
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| Q |
349 |
gtttggtagtttcaactttcaagttgagat |
378 |
Q |
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| T |
34899946 |
gtttggtagtttcaactttcaagttgagat |
34899975 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 30 - 87
Target Start/End: Complemental strand, 50813395 - 50813338
Alignment:
| Q |
30 |
cacagttattataatctaacttgagaattataatctcctattgacagcaaaactacac |
87 |
Q |
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| T |
50813395 |
cacagttattataatctaacttgagaattataatctcctattgacagcaaaactacac |
50813338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 30 - 87
Target Start/End: Original strand, 50862469 - 50862526
Alignment:
| Q |
30 |
cacagttattataatctaacttgagaattataatctcctattgacagcaaaactacac |
87 |
Q |
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| T |
50862469 |
cacagttattataatctaacttgagaattataatctcctattgacagcaaaactacac |
50862526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 105 - 133
Target Start/End: Complemental strand, 12279183 - 12279155
Alignment:
| Q |
105 |
accctaaccctaaccctaaccctaaccct |
133 |
Q |
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| T |
12279183 |
accctaaccctaaccctaaccctaaccct |
12279155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 106 - 134
Target Start/End: Original strand, 9491729 - 9491757
Alignment:
| Q |
106 |
ccctaaccctaaccctaaccctaacccta |
134 |
Q |
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| T |
9491729 |
ccctaaccctaaccctaaccctaacccta |
9491757 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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