View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5056_high_2 (Length: 355)
Name: NF5056_high_2
Description: NF5056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5056_high_2 |
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| [»] scaffold0028 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 4 - 299
Target Start/End: Original strand, 22072187 - 22072482
Alignment:
| Q |
4 |
actaccaattcggtgacatgtctgtccttgtatcctcatggttggtggacctctacctttagtaaccttatcatcaaatttcatgcctggtgaactaaat |
103 |
Q |
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| T |
22072187 |
actaccaattcggtgacatgtctgtccttgtatcctcatggttggtggacctctacctttagtaaccttatcatcaaatttcatgcctggtgaactaaat |
22072286 |
T |
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| Q |
104 |
taaaacattgaattatacattcttgtgttttgctggaaatttttggtatcttctgattgatgatcaaagagtagatgttgaagtacaggaggaggttgtc |
203 |
Q |
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| T |
22072287 |
gaaaacattgaattatacattcttgtgttttgctggaaatttttggaatcttctgattgatgatcaaagagtagatgttgaagtacagaaggaggttgtc |
22072386 |
T |
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| Q |
204 |
ttagaagaggaagttggacttttccattcccgcaacacagttgaaataaaggtgttgttgtagacttagatttatgtttcctttctaaataccaca |
299 |
Q |
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| T |
22072387 |
ttagaagaggaagttggacttttccattcccgcaacacagttgaaataaaggtgttgttgtaaacttagatttatgtttcctttctaaataccaca |
22072482 |
T |
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Target: scaffold0028 (Bit Score: 175; Significance: 4e-94; HSPs: 1)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 5 - 299
Target Start/End: Original strand, 118237 - 118531
Alignment:
| Q |
5 |
ctaccaattcggtgacatgtctgtccttgtatcctcatggttggtggacctctacctttagtaaccttatcatcaaatttcatgcctggtgaactaaatt |
104 |
Q |
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|||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| | ||||||||||||||||||||| ||||| |||||||| |
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| T |
118237 |
ctaccaattctatgacatgtctgtccttgtatcctcatagttggtggacctctaccttttgcaaccttatcatcaaatttcattcctggagaactaaacg |
118336 |
T |
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| Q |
105 |
aaaacattgaattatacattcttgtgttttgctggaaatttttggtatcttctgattgatgatcaaagagtagatgttgaagtacaggaggaggttgtct |
204 |
Q |
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|||||||||||||||||||||||||| ||| || || ||||| ||||||| |||| ||||||||||||||||||| ||| ||||||||||||||||| |
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| T |
118337 |
caaacattgaattatacattcttgtgtgttgttgaaattttttactatcttcggattcttgatcaaagagtagatgtttaagcacaggaggaggttgtct |
118436 |
T |
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| Q |
205 |
tagaagaggaagttggacttttccattcccgcaacacagttgaaataaaggtgttgttgtagacttagatttatgtttcctttctaaataccaca |
299 |
Q |
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||| ||||| |||||||| ||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| |||||||| |
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| T |
118437 |
taggagaggtagttggacctttccatctccgcaacacagttgaaataagggtgtttctgtagacttagatttatgtttcctttctagataccaca |
118531 |
T |
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