View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5056_high_5 (Length: 316)

Name: NF5056_high_5
Description: NF5056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5056_high_5
NF5056_high_5
[»] chr3 (1 HSPs)
chr3 (17-298)||(5161086-5161367)
[»] chr6 (1 HSPs)
chr6 (29-69)||(31138618-31138658)
[»] chr8 (1 HSPs)
chr8 (25-69)||(22562224-22562268)
[»] chr7 (3 HSPs)
chr7 (25-69)||(9694159-9694203)
chr7 (25-69)||(11801346-11801390)
chr7 (25-69)||(12347934-12347978)
[»] chr5 (1 HSPs)
chr5 (25-69)||(23907880-23907924)
[»] chr4 (1 HSPs)
chr4 (25-69)||(13560536-13560580)


Alignment Details
Target: chr3 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 17 - 298
Target Start/End: Complemental strand, 5161367 - 5161086
Alignment:
Q  17 tgaaataacaaaatgaacaagtagagtggtgaagtggtttgaggtaatcaagaagaacaaatacaacaatatttatttacctactttggtccaaatgatt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5161367 tgaaataacaaaatgaacaagtagagtggtgaagtggtttgaggtaatcaagaagaacaaatacaacaatatttatttacctactttggtccaaatgatt 5161268  T
Q  117 ctacaattgaggagaggacaattcttcatttcatatcaattggtttcttacaaacagaacagaagtttgaagaaattaactttcaatgacaaacgctaat 216  Q
    |||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||| |||| |||||    
T  5161267 ctacaattgaggagagaacaattcttcatttcatatcaattagtttcttacaaacagaacaggagtttgaagaaattaaccttcaatgagaaacactaat 5161168  T
Q  217 ttctaccattttccaatctctttctttggacaagaggttcaatgattttcactcccgaaaatatatctagaatattttacaa 298  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  5161167 ttctaccattttccaatctctttctttgaacaagaggttcaatgattttcactccccaaaatatatctagaatattttacaa 5161086  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 69
Target Start/End: Original strand, 31138618 - 31138658
Alignment:
Q  29 atgaacaagtagagtggtgaagtggtttgaggtaatcaaga 69  Q
    |||||||||||||||||||||||||||| ||||||| ||||    
T  31138618 atgaacaagtagagtggtgaagtggtttaaggtaatgaaga 31138658  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 69
Target Start/End: Complemental strand, 22562268 - 22562224
Alignment:
Q  25 caaaatgaacaagtagagtggtgaagtggtttgaggtaatcaaga 69  Q
    ||||||||||||||||  |||||||||||||| ||||||| ||||    
T  22562268 caaaatgaacaagtaggatggtgaagtggtttaaggtaattaaga 22562224  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 69
Target Start/End: Original strand, 9694159 - 9694203
Alignment:
Q  25 caaaatgaacaagtagagtggtgaagtggtttgaggtaatcaaga 69  Q
    |||||| |||||||||| |||||||||||||| ||||||| ||||    
T  9694159 caaaattaacaagtagaatggtgaagtggtttaaggtaatgaaga 9694203  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 69
Target Start/End: Original strand, 11801346 - 11801390
Alignment:
Q  25 caaaatgaacaagtagagtggtgaagtggtttgaggtaatcaaga 69  Q
    |||||| |||||||||| |||||||||||||| ||||||| ||||    
T  11801346 caaaattaacaagtagaatggtgaagtggtttaaggtaatgaaga 11801390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 69
Target Start/End: Original strand, 12347934 - 12347978
Alignment:
Q  25 caaaatgaacaagtagagtggtgaagtggtttgaggtaatcaaga 69  Q
    ||||||||||||||||  |||||||||||||| ||||||| ||||    
T  12347934 caaaatgaacaagtaggatggtgaagtggtttaaggtaatgaaga 12347978  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 69
Target Start/End: Complemental strand, 23907924 - 23907880
Alignment:
Q  25 caaaatgaacaagtagagtggtgaagtggtttgaggtaatcaaga 69  Q
    |||||| |||||||||| |||||||||||||| ||||||| ||||    
T  23907924 caaaattaacaagtagaatggtgaagtggtttaaggtaatgaaga 23907880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 69
Target Start/End: Original strand, 13560536 - 13560580
Alignment:
Q  25 caaaatgaacaagtagagtggtgaagtggtttgaggtaatcaaga 69  Q
    |||||| |||||||||| |||||||||||||| ||||||| ||||    
T  13560536 caaaattaacaagtagaatggtgaagtggtttaaggtaatgaaga 13560580  T

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