View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5057-Insertion-1 (Length: 954)

Name: NF5057-Insertion-1
Description: NF5057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5057-Insertion-1
NF5057-Insertion-1
[»] chr2 (14 HSPs)
chr2 (5-628)||(41650810-41651435)
chr2 (662-954)||(41650470-41650776)
chr2 (216-515)||(43226965-43227266)
chr2 (662-911)||(43227375-43227631)
chr2 (662-803)||(41654993-41655134)
chr2 (662-795)||(43212978-43213111)
chr2 (671-803)||(43223851-43223983)
chr2 (7-161)||(43226697-43226850)
chr2 (662-797)||(43206043-43206178)
chr2 (27-128)||(43205480-43205581)
chr2 (30-101)||(41657425-41657496)
chr2 (666-755)||(31558552-31558641)
chr2 (560-630)||(43227265-43227335)
chr2 (453-510)||(41656901-41656958)
[»] chr8 (2 HSPs)
chr8 (669-797)||(5072676-5072804)
chr8 (5-101)||(25928961-25929054)
[»] chr3 (1 HSPs)
chr3 (666-758)||(34595159-34595251)


Alignment Details
Target: chr2 (Bit Score: 532; Significance: 0; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 532; E-Value: 0
Query Start/End: Original strand, 5 - 628
Target Start/End: Complemental strand, 41651435 - 41650810
Alignment:
Q  5 acaaaattggcataatgagagcactcaaaatttggcattagtttgccaatatgcaaatgtaaaaaacagaattcatgtttgattttggcatgattgaact 104  Q
    |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41651435 acaaaattggcataatgag--cactcaaaatttggcattagtttgccaatatgcaaatgtaaaaaacagaattcatgtttgattttggcatgattgaact 41651338  T
Q  105 aaaaacacagaaatatcttaaacatttaaaatgcataaccgtcagaaaggagtgttgagcgttgcataaagatcggattgtccgcatttcaagctcggta 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41651337 aaaaacacagaaatatcttaaacatttaaaatgcataaccgtcagaaaggagtgttgagcgttgcataaagatcggattgtccgcatttcaagctcggta 41651238  T
Q  205 attttgattataacaaaatccacatattttgtga---atttgatctgaatctaacagtcaccaaggcacggctaacgctcaccaattcactatggcaacc 301  Q
    ||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  41651237 attttgattataacaaaatccacatattttgtgaactatttgatctgaatctaacagtcaccaaggcacggctaacactcaccaattcactatggcaacc 41651138  T
Q  302 caatttcacttcagcttgagacattcagaattttctagaacacaattcacaaggatcataatgtttgaagcttcatcaatttaacgatacttggtttgaa 401  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||    
T  41651137 caatttcacttcagcttgagacattcagaattttctagaacacaattcacaaggatcataatgtttgtagtttcatcaatttaacgatgcttggtttgaa 41651038  T
Q  402 tacataacactactttttattaattgaaaataaagt-nnnnnnnnngatagcatttttgcaattggaaataaaaactgaaaatgcttatagaaacttttt 500  Q
    |||||||||||||||||| |||||||||||||||||          ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41651037 tacataacactacttttttttaattgaaaataaagtaaaaaaacaagatagcatttttgcaattggaaataaaaactgaaaatgcttatagaaacttttt 41650938  T
Q  501 tctcaaaccaaagaggatattgtagtgacttcgtcgcatttcaaacttatttcaaaagcagtacattaaacaacgtataaagattatagcagagcatgaa 600  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  41650937 tctcaaaccaaagaggatattgtagtgacttcgtcgcatttcaaatttatttcaaaagcagtacattaaacaaagtataaagattatagcagagcatgaa 41650838  T
Q  601 gaaatcacatgtattaaagagaatgaac 628  Q
    |||||||||| |||| ||||||||||||    
T  41650837 gaaatcacatatattgaagagaatgaac 41650810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 662 - 954
Target Start/End: Complemental strand, 41650776 - 41650470
Alignment:
Q  662 ccatacttgtaactctttttcatgctccttgaggatcttagcagcaccaagaagcatagccacgtgagcatcatgaccacatgcatgcatctttccaggt 761  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41650776 ccatacttgtaactctttttcatgttccttgagaatcttagcagcaccaagaagcatagccacgtgagcatcatgaccacatgcatgcatctttccaggt 41650677  T
Q  762 actttactcatatgctcccactccaccaattcctaatgttaa-aaaatcaataaaatatagattaaacattatcctcatagaaatag-aatacatcacaa 859  Q
    ||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  41650676 actttactcttatgctcccactccaccaattcctaatgttaaaaaaatcaataaaatatagattaaacattatcctcatagaaatagaaatacatcacaa 41650577  T
Q  860 acc-aaaaattgcaacaaaa--ggaaaaacttaattgcaa--ttggtctcacca-tttgcgga-ttagtcc-tctattt---aatatgtcag-tttggtc 947  Q
    ||| ||||||||||||||||  | ||||||||||||||||  |||||||||||| |||||||| ||||||| |||||||   |||||||||| |||||||    
T  41650576 accaaaaaattgcaacaaaaaggaaaaaacttaattgcaattttggtctcaccattttgcggatttagtccttctattttaaaatatgtcagttttggtc 41650477  T
Q  948 tctgtct 954  Q
    |||||||    
T  41650476 tctgtct 41650470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 165; E-Value: 9e-88
Query Start/End: Original strand, 216 - 515
Target Start/End: Original strand, 43226965 - 43227266
Alignment:
Q  216 aacaaaatccacatattttgtgaa---tttgatctgaatctaacagtcaccaaggcacgg-ctaacgctcaccaattcactatggcaacccaatttcact 311  Q
    ||||||||||||||||||||||||   ||||||||||||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||||||||     
T  43226965 aacaaaatccacatattttgtgaactatttgatctgaatctaacggtcatcaaggcacggactaacgctcaccaattcactatggcaacccaatttcaca 43227064  T
Q  312 tcagcttgagacattcagaattttctagaacacaattcacaaggatcataatgtttgaagcttcatcaatttaacgatacttggtttgaatacataacac 411  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || |||| || ||||| ||| |||||||||||||||||||||    
T  43227065 tcagcttgagagattcagaattttctagaacacaattcacaaggatcataatgtttgtagtttcagcactttaatgatgcttggtttgaatacataacac 43227164  T
Q  412 tactttttattaattgaaaataaagtnnnnnnnnngatagcatttttgcaattggaaataaaaactg-aaaatgcttatag-aaacttttttctcaaacc 509  Q
    || ||||  | |||||||||||||||         |||| |||||||||||||| |||||||||||| ||||||||||||| ||||||||| ||||||||    
T  43227165 taatttt--tcaattgaaaataaagt--aaaaaaagataacatttttgcaattgaaaataaaaactgaaaaatgcttatagaaaactttttactcaaacc 43227260  T
Q  510 aaagag 515  Q
    ||||||    
T  43227261 aaagag 43227266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 155; E-Value: 9e-82
Query Start/End: Original strand, 662 - 911
Target Start/End: Original strand, 43227375 - 43227631
Alignment:
Q  662 ccatacttgtaactctttttcatgctccttgaggatcttagcagcaccaagaagcatagccacgtgagcatcatgaccacatgcatgcatctttccaggt 761  Q
    ||||||||||||||||||||| |||| |||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||    
T  43227375 ccatacttgtaactctttttcgtgctgcttgaggatctttgcagcaccaagaagcatagcaacatgagcatcatgaccacatgcatgcatctttccaggt 43227474  T
Q  762 actttactcatatgctcccactccaccaattcctaatgtt-aaaaaatcaataaaatatagattaaacattatcctcatagaaatag-aatacatcacaa 859  Q
    ||||| ||  |||||||||| |||| |||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||||| |||||| |||||    
T  43227475 actttgcttttatgctcccattccaacaattcctaatgttaaaaaaatcaataaaatatagattaaatattatcctcgtagaaatagaaatacaacacaa 43227574  T
Q  860 acc-aaaaattgcaac--aaaaggaaaaacttaattgcaa--ttggtctcaccattt 911  Q
    ||| ||||||||||||  ||||| ||||||||||||||||  |||||||||||||||    
T  43227575 accaaaaaattgcaacaaaaaagaaaaaacttaattgcaattttggtctcaccattt 43227631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 106; E-Value: 2e-52
Query Start/End: Original strand, 662 - 803
Target Start/End: Complemental strand, 41655134 - 41654993
Alignment:
Q  662 ccatacttgtaactctttttcatgctccttgaggatcttagcagcaccaagaagcatagccacgtgagcatcatgaccacatgcatgcatctttccaggt 761  Q
    |||||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||     
T  41655134 ccatacctgtaactgtttttcatgttccttgaggatcttagcagcaccaagaagcatagcaacatgagcatcatggccacatgcatgcatctttccaggc 41655035  T
Q  762 actttactcatatgctcccactccaccaattcctaatgttaa 803  Q
    ||||||||| |||||||||||||||||||||||||| |||||    
T  41655034 actttactcttatgctcccactccaccaattcctaaggttaa 41654993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 106; E-Value: 2e-52
Query Start/End: Original strand, 662 - 795
Target Start/End: Original strand, 43212978 - 43213111
Alignment:
Q  662 ccatacttgtaactctttttcatgctccttgaggatcttagcagcaccaagaagcatagccacgtgagcatcatgaccacatgcatgcatctttccaggt 761  Q
    |||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||| || |||||||||||||||||| |||||||||||||||||    
T  43212978 ccatacctgtaactctttttcatgctccttgagaatcttagcagcacctagaagcatagcaacatgagcatcatgaccacatccatgcatctttccaggt 43213077  T
Q  762 actttactcatatgctcccactccaccaattcct 795  Q
    ||||||||| ||||||||||||||||||||||||    
T  43213078 actttactcttatgctcccactccaccaattcct 43213111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 671 - 803
Target Start/End: Original strand, 43223851 - 43223983
Alignment:
Q  671 taactctttttcatgctccttgaggatcttagcagcaccaagaagcatagccacgtgagcatcatgaccacatgcatgcatctttccaggtactttactc 770  Q
    ||||| ||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||| |||||||||    
T  43223851 taactgtttttcatgttccttgaggatcttagcagcaccaagaagcatagcaacatgagcatcatggccacatgcatgcatctttccaggcactttactc 43223950  T
Q  771 atatgctcccactccaccaattcctaatgttaa 803  Q
     |||||||||||||||||||||||||| |||||    
T  43223951 ttatgctcccactccaccaattcctaaggttaa 43223983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 7 - 161
Target Start/End: Original strand, 43226697 - 43226850
Alignment:
Q  7 aaaattggcataatgagagcactcaaaatttggcattagtttgccaatatgcaaatgtaaaaaac-agaattcatgtttgattttggcatgattgaacta 105  Q
    |||||||||||||||||  |||| |||||||||||||||| |||||||||||||||||||||||  ||||||||||||||||||||||||||||||| ||    
T  43226697 aaaattggcataatgag--cacttaaaatttggcattagtgtgccaatatgcaaatgtaaaaaaatagaattcatgtttgattttggcatgattgaatta 43226794  T
Q  106 aaaacacagaaatatcttaaacatttaaaatgcataaccgtcagaaaggagtgttg 161  Q
    |||||||| |||||||||||||| || || ||||||||||||||| ||||||||||    
T  43226795 aaaacacaaaaatatcttaaacagttgaagtgcataaccgtcagagaggagtgttg 43226850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 662 - 797
Target Start/End: Original strand, 43206043 - 43206178
Alignment:
Q  662 ccatacttgtaactctttttcatgctccttgaggatcttagcagcaccaagaagcatagccacgtgagcatcatgaccacatgcatgcatctttccaggt 761  Q
    |||||| ||||| | ||||||| | |||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||    
T  43206043 ccatacatgtaaatgtttttcacggtccttgagaatcttagcagcaccaagaagcatagcaacatgagcatcatgaccacatgcatgcatctttccaggt 43206142  T
Q  762 actttactcatatgctcccactccaccaattcctaa 797  Q
    ||||||||  |||||||||||||||||| |||||||    
T  43206143 actttacttttatgctcccactccaccatttcctaa 43206178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 27 - 128
Target Start/End: Original strand, 43205480 - 43205581
Alignment:
Q  27 actcaaaatttggcattagtttgccaatatgcaaatgtaaaaaacagaattcatgtttgattttggcatgattgaactaaaaacacagaaatatcttaaa 126  Q
    |||||||||||||||| ||||||||||||| || |    | ||||||||||||||||||| ||| || | |||||| |||||||||||||| | ||||||    
T  43205480 actcaaaatttggcatcagtttgccaatatacagacagcagaaacagaattcatgtttgactttcgcctaattgaattaaaaacacagaaacaacttaaa 43205579  T
Q  127 ca 128  Q
    ||    
T  43205580 ca 43205581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 30 - 101
Target Start/End: Complemental strand, 41657496 - 41657425
Alignment:
Q  30 caaaatttggcattagtttgccaatatgcaaatgtaaaaaacagaattcatgtttgattttggcatgattga 101  Q
    ||||||||||||| |||||||||||||| |||||||| ||| | || |||||||| | ||||||||||||||    
T  41657496 caaaatttggcatcagtttgccaatatgaaaatgtaagaaatataagtcatgtttcactttggcatgattga 41657425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 666 - 755
Target Start/End: Complemental strand, 31558641 - 31558552
Alignment:
Q  666 acttgtaactctttttcatgctccttgaggatcttagcagcaccaagaagcatagccacgtgagcatcatgaccacatgcatgcatcttt 755  Q
    ||||||| |||||||||||| |  || || ||||| ||||||||||| ||||| |  || ||||||||||||||||| ||||||||||||    
T  31558641 acttgtatctctttttcatgttgtttaagaatctttgcagcaccaagtagcatggtaacatgagcatcatgaccacacgcatgcatcttt 31558552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 560 - 630
Target Start/End: Original strand, 43227265 - 43227335
Alignment:
Q  560 agtacattaaacaacgtataaagattatagcagagcatgaagaaatcacatgtattaaagagaatgaacat 630  Q
    |||||||||||||| | ||||| || || |||||||||||||||||| |||  ||| ||||||||||||||    
T  43227265 agtacattaaacaaagcataaaaataattgcagagcatgaagaaatctcatacattgaagagaatgaacat 43227335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 453 - 510
Target Start/End: Complemental strand, 41656958 - 41656901
Alignment:
Q  453 atttttgcaattggaaataaaaactgaaaatgcttatagaaacttttttctcaaacca 510  Q
    ||||||||||||  |||| ||||||||||||||  ||||||  |||||||||||||||    
T  41656958 atttttgcaatttaaaatgaaaactgaaaatgcaaatagaatattttttctcaaacca 41656901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 73; Significance: 7e-33; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 669 - 797
Target Start/End: Original strand, 5072676 - 5072804
Alignment:
Q  669 tgtaactctttttcatgctccttgaggatcttagcagcaccaagaagcatagccacgtgagcatcatgaccacatgcatgcatctttccaggtactttac 768  Q
    |||| |||||||||||||| |||||| ||||| ||||||||||| ||||| |  || ||||||||||||||||| |||||||||||||||||||| ||||    
T  5072676 tgtatctctttttcatgctgcttgagaatctttgcagcaccaagtagcatggtaacatgagcatcatgaccacacgcatgcatctttccaggtaccttac 5072775  T
Q  769 tcatatgctcccactccaccaattcctaa 797  Q
    || | |||||||||||||||| |||||||    
T  5072776 tcctgtgctcccactccaccatttcctaa 5072804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 5 - 101
Target Start/End: Original strand, 25928961 - 25929054
Alignment:
Q  5 acaaaattggcataatgagagcactcaaaatttggcattagtttgccaatatgcaaatgtaaaaaacagaattcatgtttgattttggcatgattga 101  Q
    |||||||||||| ||  ||||||||||||||||||||| ||||||||||||||||||| | |||| |||||||||||||||||||||||||| ||||    
T  25928961 acaaaattggcacaa--agagcactcaaaatttggcatcagtttgccaatatgcaaat-ttaaaatcagaattcatgtttgattttggcatgtttga 25929054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 666 - 758
Target Start/End: Original strand, 34595159 - 34595251
Alignment:
Q  666 acttgtaactctttttcatgctccttgaggatcttagcagcaccaagaagcatagccacgtgagcatcatgaccacatgcatgcatctttcca 758  Q
    ||||||| |||||||||||| |  ||||| ||||| | ||||||||| |||||  | || ||||||||| |||||||  ||||||||||||||    
T  34595159 acttgtatctctttttcatgttgtttgagaatctttgtagcaccaagtagcatgacaacatgagcatcacgaccacactcatgcatctttcca 34595251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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