View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5057_high_1 (Length: 842)
Name: NF5057_high_1
Description: NF5057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5057_high_1 |
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| [»] scaffold0051 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 718; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 718; E-Value: 0
Query Start/End: Original strand, 12 - 814
Target Start/End: Original strand, 36423821 - 36424617
Alignment:
| Q |
12 |
catatgttcaaccaaacatgatttgcatttttgagagttatgctggtgacattgcttggcgacacgccgagtggagaagcagagacattaaggtaataat |
111 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||| |
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| T |
36423821 |
catatgttcaaccaaacatgatttgcatttttgagagttatgctggtgacattgcttggcgacacgccgagtgtccaatcactgacattaaggtaataat |
36423920 |
T |
|
| Q |
112 |
ttcagtactcatgacataatcactgtcttattacagattcatcaaactaggaatgttaaatcctctattttattctaagagtttaattcttattgtaata |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36423921 |
ttcagtactcatgacataatcactgtcttattacagattcatcaaactaggaatgttaaatcctctattttattctaagagtttaattcttattgtaata |
36424020 |
T |
|
| Q |
212 |
tgtacagattttcatttttatactttgattacttattttgagtttatgctattgtgagcaggttacagaagtgaggccaaaggtgacactggtggttaga |
311 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36424021 |
tgtacatattttcatttttatactttgattacttattttgagtttatgctattgtg-gcaggttacagaagtgaggccaaaggtgacactggtggttaga |
36424119 |
T |
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| Q |
312 |
atggcagcagcagtggcaaactatgactatatcatggattgggaatttcaaacagatgggctaatcagatccaaggtaggtgttgaaaattaagtttatt |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36424120 |
atggcagcagcagtggcaaactatgactatatcatggattgggaatttcaaacagatgggctaatcagatccaaggtaggtgttgaaaattaagtttatt |
36424219 |
T |
|
| Q |
412 |
tagtttgaaaaatattcttgtttagggaattgtgctgagattaatacttccaataataatctctgtagagaggagactatcttgtccatagttttggagt |
511 |
Q |
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| T |
36424220 |
tagtttgaaaaatattcttgtttagggaattgtgctgagattaatacttccaataataatctctgtagagaggagactatcttgtccatagttttggagt |
36424319 |
T |
|
| Q |
512 |
gtgtacaataaactattcatcaagttacactgacatagttttggagtactatttaatttaatgacaccagaatttatgtgacatatgcaatgtatttcaa |
611 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
36424320 |
gtgtacaataaactattcatcaagttacattgacatagttttggagtactatttaatttaaggacaccagaatttatgtgacatatgcaatgtatttcaa |
36424419 |
T |
|
| Q |
612 |
ttataaattgtaatcactnnnnnnntggacaagttgaattgtagattgatggtttaaggtaagaggttggacaaatatttatattatagattgatgctac |
711 |
Q |
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| T |
36424420 |
ttataaattgtaatcactaaaaaaatggacaagttgaattgtagattgatggtttaaggtaagaggttggacaaatat-----ttatagattgatgctac |
36424514 |
T |
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| Q |
712 |
atgttttgtctcattgtattaaataacttaagctcacatcaaattttgtttctgatgtaggttggactaagtggtatcttgatggtgaaaggaacaacct |
811 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36424515 |
atgttttgtctcattgtattaaataacttaagctcacatcaaattttgtttctgatgtaggttggactaagtggtatcttgatggtgaaaggaacaacct |
36424614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 66
Target Start/End: Original strand, 20538272 - 20538310
Alignment:
| Q |
28 |
catgatttgcatttttgagagttatgctggtgacattgc |
66 |
Q |
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| T |
20538272 |
catgatttgcatttttgagagttatgctggtgacgttgc |
20538310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0051 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0051
Description:
Target: scaffold0051; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 780 - 813
Target Start/End: Complemental strand, 19584 - 19551
Alignment:
| Q |
780 |
aagtggtatcttgatggtgaaaggaacaacctat |
813 |
Q |
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| T |
19584 |
aagtggtatcttgatggtgaaaggaacaacctat |
19551 |
T |
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