View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5057_high_3 (Length: 369)

Name: NF5057_high_3
Description: NF5057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5057_high_3
NF5057_high_3
[»] chr3 (3 HSPs)
chr3 (1-365)||(6251583-6251947)
chr3 (1-365)||(6172242-6172604)
chr3 (1-126)||(53379039-53379165)
[»] chr2 (1 HSPs)
chr2 (4-306)||(9683839-9684139)
[»] chr7 (1 HSPs)
chr7 (4-365)||(19279967-19280322)
[»] chr8 (6 HSPs)
chr8 (11-365)||(24126428-24126788)
chr8 (1-341)||(24323012-24323350)
chr8 (1-293)||(10949617-10949908)
chr8 (1-293)||(10957622-10957913)
chr8 (1-76)||(4701034-4701109)
chr8 (11-335)||(140714-141037)
[»] chr1 (3 HSPs)
chr1 (4-321)||(19036827-19037126)
chr1 (1-77)||(7793558-7793636)
chr1 (1-88)||(22376201-22376288)
[»] chr6 (2 HSPs)
chr6 (1-74)||(29336712-29336785)
chr6 (135-263)||(29336585-29336710)
[»] chr5 (1 HSPs)
chr5 (1-84)||(6820790-6820873)
[»] chr4 (1 HSPs)
chr4 (9-81)||(23808328-23808400)


Alignment Details
Target: chr3 (Bit Score: 365; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 1 - 365
Target Start/End: Complemental strand, 6251947 - 6251583
Alignment:
Q  1 agataccaaacatgaagaagaagcttgcaactatttctaatctgatgaataagagggtgtaacataagagcaaaaaggagcgtccctatgggtcaccttg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6251947 agataccaaacatgaagaagaagcttgcaactatttctaatctgatgaataagagggtgtaacataagagcaaaaaggagcgtccctatgggtcaccttg 6251848  T
Q  101 ttgcactccagaagcagacataatatgcccaccgccaacgtataacctcgttgcttcgccataaagaaactcaacccatagagagaaatagatgggcatc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6251847 ttgcactccagaagcagacataatatgcccaccgccaacgtataacctcgttgcttcgccataaagaaactcaacccatagagagaaatagatgggcatc 6251748  T
Q  201 tcaatctcacatcacgtagcagtgctgacctatctaccaagttgaaggcattcgaaaaatctactataagcattgtcaaggaaccatctccatgtcgtag 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6251747 tcaatctcacatcacgtagcagtgctgacctatctaccaagttgaaggcattcgaaaaatctactataagcattgtcaaggaaccatctccatgtcgtag 6251648  T
Q  301 gttcaatactctattgacactatgcaaaatggcctctgccccacttcaaaccctaacaccaaact 365  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6251647 gttcaatactctattgacactatgcaaaatggcctctgccccacttcaaaccctaacaccaaact 6251583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 365
Target Start/End: Complemental strand, 6172604 - 6172242
Alignment:
Q  1 agataccaaacatgaagaagaagcttgcaactatttctaatctgatgaataagagggtgtaacataagagcaaaaaggagcgtccctatgggtcaccttg 100  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  6172604 agataccaaacatgaagaagaatcttgcaactatttctaatctgatgaataagagggtgtaacataagagcaaaaaggagcggccctatgggtcaccttg 6172505  T
Q  101 ttgcactccagaagcagacataatatgcccaccgccaacgtataacctcgttgcttcgccataaagaaactcaacccatagagagaaatagatgggcatc 200  Q
    |||||||| | ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||  |||||||| |||||||||    
T  6172504 ttgcactctataagcagacataatatgcccaccgccaacgtataacctcgctgcttcgccataaagaaactcaacccata--gagaaatacatgggcatc 6172407  T
Q  201 tcaatctcacatcacgtagcagtgctgacctatctaccaagttgaaggcattcgaaaaatctactataagcattgtcaaggaaccatctccatgtcgtag 300  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||||||||||||||    
T  6172406 tcaatctcacatcacgtagcagtgctgatctatctaccaagttgaaggcattcgaaaaatctactgtaagcatagtcaaggaatcatctccatgtcgtag 6172307  T
Q  301 gttcaatactctattgacactatgcaaaatggcctctgccccacttcaaaccctaacaccaaact 365  Q
    ||||||||||||||||||||| ||||||||||| || ||||||||| ||||||||||||||||||    
T  6172306 gttcaatactctattgacactgtgcaaaatggcatccgccccacttgaaaccctaacaccaaact 6172242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 53379039 - 53379165
Alignment:
Q  1 agataccaaacatgaagaagaagcttgcaactatttctaatctgatgaataagagggtgtaacataagagcaaaaaggagcgtccct-atgggtcacctt 99  Q
    ||||||||| |||||||||||||||||||||||| ||| || ||||||||||||||||| |||| | ||||||||||||| | |||| ||||||| ||||    
T  53379039 agataccaagcatgaagaagaagcttgcaactatctctgatatgatgaataagagggtgcaacacacgagcaaaaaggagtggccctaatgggtcgcctt 53379138  T
Q  100 gttgcactccagaagcagacataatat 126  Q
    ||||||||||||  ||| |||||||||    
T  53379139 gttgcactccagcggcaaacataatat 53379165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 143; Significance: 5e-75; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 4 - 306
Target Start/End: Complemental strand, 9684139 - 9683839
Alignment:
Q  4 taccaaacatgaagaagaagcttgcaactatttctaatctgatgaataagagggtgtaacataagagcaaaaaggagcgtccct-atgggtcaccttgtt 102  Q
    |||||| ||||||||||||| |||||||||| ||| |||||||||||||||||||| |||| ||||||||||||||||| |||| | ||||| |||||||    
T  9684139 taccaagcatgaagaagaagtttgcaactatctctgatctgatgaataagagggtgcaacacaagagcaaaaaggagcggccctaacgggtcgccttgtt 9684040  T
Q  103 gcactccagaagcagacataatatgcccaccgccaacgtataacctcgttgcttcgccataaagaaactcaacccatagagagaaatagatgggcatctc 202  Q
    ||||||||| ||||||||||||||| ||| | |||| |||||| |||||||| |  ||||||||||||| ||| |||  | |||||||||||||||||||    
T  9684039 gcactccagtagcagacataatatgtccatcaccaaggtataatctcgttgcctgtccataaagaaacttaactcat--aaagaaatagatgggcatctc 9683942  T
Q  203 aatctcacatcacgtagcagtgctgacctatctaccaagttgaaggcattc-gaaaaatctactataagcattgtcaaggaaccatctccatgtcgtagg 301  Q
    |||||||| ||||||||||||    |  | |||||||||||||| ||||||  ||||||||||||||||||| ||||||||||||||||||||||| |||    
T  9683941 aatctcacctcacgtagcagt--caatttgtctaccaagttgaaagcattcaaaaaaatctactataagcatagtcaaggaaccatctccatgtcgcagg 9683844  T
Q  302 ttcaa 306  Q
    |||||    
T  9683843 ttcaa 9683839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 132; Significance: 2e-68; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 4 - 365
Target Start/End: Original strand, 19279967 - 19280322
Alignment:
Q  4 taccaaacatgaagaagaagcttgcaactatttctaatctgatgaataagagggtgtaacataagagcaaaaaggagcgtccct-atgggtcaccttgtt 102  Q
    |||||| |||||||||||||||||||||||| ||| || ||||||||||||||||| |||| ||||||||||||||||| |||| ||||||| | |||||    
T  19279967 taccaagcatgaagaagaagcttgcaactatctctgatatgatgaataagagggtgcaacacaagagcaaaaaggagcggccctaatgggtctcgttgtt 19280066  T
Q  103 gcactccagaagcagacataatatgcccaccgccaacgtataacctcgttgcttcgccataaagaaactcaacccatagagagaaatagatgggcatctc 202  Q
    ||| ||||| || |||||||||||| ||| | |||| || ||| |||| ||| |  |||||||||||||||||||||  | ||||||  |||||||||||    
T  19280067 gcattccagtagtagacataatatgtccatcaccaaggtgtaatctcgctgcctgtccataaagaaactcaacccat--aaagaaatgaatgggcatctc 19280164  T
Q  203 aatctcacatcacgtagcagtgctgacctatctaccaagttgaaggcattcgaaaaatctactataagcattgtcaaggaaccatctccatgtcgtaggt 302  Q
    ||||     ||||||| ||   | ||||| |||||||||||||| |||||||||||||||||| |||||||  | ||||||||||||| |||||| ||||    
T  19280165 aatc-----tcacgtatcaacaccgacctgtctaccaagttgaaagcattcgaaaaatctactgtaagcataattaaggaaccatctcaatgtcgcaggt 19280259  T
Q  303 tcaatactctattgacactatgcaaaatggcctctgccccacttcaaaccctaacaccaaact 365  Q
    |||| || || |||||||| |||||||||||||| ||||||| | |||| |  ||||||||||    
T  19280260 tcaacaccctgttgacactgtgcaaaatggcctccgccccacctgaaactcccacaccaaact 19280322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 122; Significance: 2e-62; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 11 - 365
Target Start/End: Original strand, 24126428 - 24126788
Alignment:
Q  11 catgaagaagaagcttgcaactatttctaatctgatgaataagagggtgtaacataagagcaaaaaggagcgtccctatgggtc-accttgttgcactcc 109  Q
    |||||||||||||||||||||||| |||| | |||||||||||||||||||||| |||| |||||||||||| || ||   | | ||||| ||| |||||    
T  24126428 catgaagaagaagcttgcaactatctctactttgatgaataagagggtgtaacacaagatcaaaaaggagcggccttaacagaccaccttattgtactcc 24126527  T
Q  110 agaagcagacataatatgcccaccgccaacgtataacctcgttgcttcgccataaagaaactcaacccatagagagaaatagatgggcatctcaatctca 209  Q
    |  |||| ||| |||||| ||| | |||| ||||||||||| ||| |  |||||| |||||| ||||| || |||  ||||||| |||||||||||||||    
T  24126528 aatagcaaacagaatatgtccatcaccaaggtataacctcgctgcctgtccataatgaaactaaacccttaaaga--aatagataggcatctcaatctca 24126625  T
Q  210 catcacgtagcagtgctgacctatctaccaagttgaaggcattcgaaaaatctactataagcattgtcaaggaacc-------atctccatgtcgtaggt 302  Q
    | |||||||||||||  |||||  |||||||||||||  ||||| ||||||||||||||||||| |||||||||||       |||||||||||| ||||    
T  24126626 cctcacgtagcagtgtcgacctgcctaccaagttgaaaacattcaaaaaatctactataagcatagtcaaggaaccatctctaatctccatgtcgcaggt 24126725  T
Q  303 tcaatactctattgacactatgcaaaatggcctctgccccacttcaaaccctaacaccaaact 365  Q
    | || || || |||||||| |||||||||||||| ||||||| | |||||| |||||||||||    
T  24126726 ttaacaccctgttgacactgtgcaaaatggcctccgccccacctgaaaccccaacaccaaact 24126788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 1 - 341
Target Start/End: Original strand, 24323012 - 24323350
Alignment:
Q  1 agataccaaacatgaagaagaagcttgcaactatttctaatctgatgaataagagggtgtaacataagagcaaaaaggagcgtcccta-tgggtcacctt 99  Q
    ||||||||| |||||||||||||||||||||||| | | || || |||||||||||||| |||||||||||||||||||||| || || |||||| | ||    
T  24323012 agataccaagcatgaagaagaagcttgcaactatctttgatatgctgaataagagggtgcaacataagagcaaaaaggagcgaccttaatgggtcgcttt 24323111  T
Q  100 gttgcactccagaagcagacataatatgcccaccgccaacgtataacctcgttgcttcgccataaagaaactcaacccatagagagaaatagatgggcat 199  Q
    ||||||||| ||  | | |||||||||  ||| | ||||  || ||  |   ||| |  | ||||||||||||||||||||  ||  |||||| ||||||    
T  24323112 gttgcactcaagtggaatacataatatttccatcaccaagatacaattttcctgcctgtctataaagaaactcaacccataatga--aatagacgggcat 24323209  T
Q  200 ctcaatctcacatcacgtagcagtgctgacctatctaccaagttgaaggcattcgaaaaatctactataagcattgtcaaggaaccatctccatgtcgta 299  Q
    |||||||| || |||||||||||||| ||| | ||||||||||||||||||||| ||||||||||| | ||||| ||||| ||||||||||||||||  |    
T  24323210 ctcaatcttacctcacgtagcagtgccgacatgtctaccaagttgaaggcattc-aaaaatctactgtgagcatagtcaatgaaccatctccatgtcaca 24323308  T
Q  300 ggttcaatactctattgacactatgcaaaatggcctctgccc 341  Q
    || |||| ||| | ||  ||||||||||||| | ||||||||    
T  24323309 ggctcaacactttgttagcactatgcaaaatcgtctctgccc 24323350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 10949908 - 10949617
Alignment:
Q  1 agataccaaacatgaagaagaagcttgcaactatttctaatctgatgaataagagggtgtaacataagagcaaaaaggagcgtcccta-tgggtcacctt 99  Q
    ||||||| | ||||||||| |||||||||||||| | |  | ||||||||||| |   |||||  ||||| |||||| |||| || || ||| || ||||    
T  10949908 agatacctagcatgaagaaaaagcttgcaactatctattgtttgatgaataagtgttggtaacgcaagagaaaaaagaagcggccataatggctcgcctt 10949809  T
Q  100 gttgcactccagaagcagacataatatgcccaccgccaacgtataacctcgttgcttcgccataaagaaactcaacccatagagagaaatagatgggcat 199  Q
    ||||||||||||  | |||||||||||| |||   |||| |||||| |||  ||  |  ||||||| || |||||| |||| |||  ||||||||| |||    
T  10949808 gttgcactccagttgaagacataatatgtccataaccaatgtataatctcactgtatgtccataaaaaagctcaactcataaaga--aatagatggacat 10949711  T
Q  200 ctcaatctcacatcacgtagcagtgctgacctatctaccaagttgaaggcattcgaaaaatctactataagcattgtcaaggaaccatctccat 293  Q
    ||||||||||| ||||| | || || |||| | |||||||||||||| |||||||||||| ||||| | ||||| |||||||||||||||||||    
T  10949710 ctcaatctcacttcacgcaacaatgttgacatgtctaccaagttgaaagcattcgaaaaaactactgtgagcatagtcaaggaaccatctccat 10949617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 10957913 - 10957622
Alignment:
Q  1 agataccaaacatgaagaagaagcttgcaactatttctaatctgatgaataagagggtgtaacataagagcaaaaaggagcgtcccta-tgggtcacctt 99  Q
    ||||||| | ||||||||| |||||||||||||| | |  | ||||||||||| |   |||||  ||||| |||||| |||| || || ||| || ||||    
T  10957913 agatacctagcatgaagaaaaagcttgcaactatctattgtttgatgaataagtgttggtaacgcaagagaaaaaagaagcggccataatggctcgcctt 10957814  T
Q  100 gttgcactccagaagcagacataatatgcccaccgccaacgtataacctcgttgcttcgccataaagaaactcaacccatagagagaaatagatgggcat 199  Q
    ||||||||||||  | |||||||||||| |||   |||| |||||| |||  ||  |  ||||||| || |||||| |||| |||  ||||||||| |||    
T  10957813 gttgcactccagttgaagacataatatgtccataaccaatgtataatctcactgtatgtccataaaaaagctcaactcataaaga--aatagatggacat 10957716  T
Q  200 ctcaatctcacatcacgtagcagtgctgacctatctaccaagttgaaggcattcgaaaaatctactataagcattgtcaaggaaccatctccat 293  Q
    ||||||||||| ||||| | || || |||| | |||||||||||||| |||||||||||| ||||| | ||||| |||||||||||||||||||    
T  10957715 ctcaatctcacttcacgcaacaatgttgacatgtctaccaagttgaaagcattcgaaaaaactactgtgagcatagtcaaggaaccatctccat 10957622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 4701034 - 4701109
Alignment:
Q  1 agataccaaacatgaagaagaagcttgcaactatttctaatctgatgaataagagggtgtaacataagagcaaaaa 76  Q
    ||||||||||||| ||||| |||||||||| ||| ||| |||||| ||| |||||||||||||| |||| ||||||    
T  4701034 agataccaaacataaagaaaaagcttgcaattatctctgatctgaggaacaagagggtgtaacacaagaccaaaaa 4701109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 335
Target Start/End: Original strand, 140714 - 141037
Alignment:
Q  11 catgaagaagaagcttgcaactatttctaatctgatgaataagagggtgtaacataagagcaaaaaggagcgtcc-ctatgggtcaccttgttgcactcc 109  Q
    ||||||||||||||||| || | | ||| || ||||| |||||||||||||||| | ||||||||| ||| | || | | ||||  |||||||||||||     
T  140714 catgaagaagaagcttgtaaatgtctctgatttgatgtataagagggtgtaacacatgagcaaaaaagagtggcctcaacgggttgccttgttgcactct 140813  T
Q  110 agaagcagacataatatgcccaccgccaacgtataacctcgttgcttcgccataaagaaactcaacccatagagagaaatagatgggcatctcaatctca 209  Q
    ||  || |||||||  || ||| | | || | |||||||| |||  |  ||||||||| |||||||||||  | ||||||| | | ||||||||  ||||    
T  140814 agtggctgacataacgtgtccagctcaaatgaataacctcattgtcttaccataaagagactcaacccat--aaagaaatatacgagcatctcagactca 140911  T
Q  210 catcacgtagcagtgctgacctatctaccaagttgaaggcattcgaaaaatctactataagcattgtcaaggaaccatctccatgtcgtaggttcaatac 309  Q
    | | | | |||| ||| ||| | |||| ||||||||| |||||||| |||||||   | ||||| |  ||  |||||||||||||| ||  | |||| ||    
T  140912 cctgatgcagcaatgccgacgtgtctatcaagttgaaagcattcgagaaatctatcgtgagcatagataaaaaaccatctccatgttgttagctcaacac 141011  T
Q  310 tctattgacactatgcaaaatggcct 335  Q
      |||||| |||||||||||||||||    
T  141012 cttattgatactatgcaaaatggcct 141037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 97; Significance: 1e-47; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 4 - 321
Target Start/End: Original strand, 19036827 - 19037126
Alignment:
Q  4 taccaaacatgaagaagaagcttgcaactatttctaatctgatgaataagagggtgtaacataagagcaaaaaggagcgtcccta-tgggtcaccttgtt 102  Q
    |||||| ||||||||| |||||||||||||| ||| || ||||||||||||||||| |||| ||||||||||||||||| ||||| ||| |   ||||||    
T  19036827 taccaagcatgaagaataagcttgcaactatctctgatatgatgaataagagggtgcaacacaagagcaaaaaggagcggccctaatggattgtcttgtt 19036926  T
Q  103 gcactccagaagcagacataatatgcccaccgccaacgtataacctcgttgcttcgccataaagaaactcaacccatagagagaaatagatgggcatctc 202  Q
    ||||||||| |||| |||||||||| ||| | |||| |||||| |||| | | |  |||||||||||                   ||||| ||||||||    
T  19036927 gcactccagtagcatacataatatgtccatcaccaaggtataaactcgcttcctatccataaagaaa-------------------tagataggcatctc 19037007  T
Q  203 aatctcacatcacgtagcagtgctgacctatctaccaagttgaaggcattcgaaaaatctactataagcattgtcaaggaaccatctccatgtcgtaggt 302  Q
    |||||||| |||||||| ||||| || ||||||||||||||||| |||||||||||||||||| ||||||| | ||| ||||||||||||||||| ||||    
T  19037008 aatctcacctcacgtagtagtgccgaactatctaccaagttgaaagcattcgaaaaatctactgtaagcatagccaaagaaccatctccatgtcgcaggt 19037107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 7793636 - 7793558
Alignment:
Q  1 agataccaaacatgaagaagaagcttgcaactatttctaatctgatga--ataagagggtgtaacataagagcaaaaag 77  Q
    ||||| |||||||||| ||||||||||||||||| | |||||||||||  |||||||||| ||||| || |||||||||    
T  7793636 agatatcaaacatgaaaaagaagcttgcaactatctttaatctgatgaatataagagggtataacacaaaagcaaaaag 7793558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 22376201 - 22376288
Alignment:
Q  1 agataccaaacatgaagaagaagcttgcaactatttctaatctgatgaataagagggtgtaacataagagcaaaaaggagcgtcccta 88  Q
    ||||||||||  | |||||||||||||||||||| | | || |||||||||||| ||||||||| || |||||||| ||||| |||||    
T  22376201 agataccaaatctaaagaagaagcttgcaactatctttgatgtgatgaataagatggtgtaacacaatagcaaaaatgagcggcccta 22376288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 6e-22; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 29336785 - 29336712
Alignment:
Q  1 agataccaaacatgaagaagaagcttgcaactatttctaatctgatgaataagagggtgtaacataagagcaaa 74  Q
    ||||||||| |||||||||||||||||||||||| ||| |||||||||||||| ||||| ||||||||||||||    
T  29336785 agataccaagcatgaagaagaagcttgcaactatatctgatctgatgaataagggggtgcaacataagagcaaa 29336712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 135 - 263
Target Start/End: Complemental strand, 29336710 - 29336585
Alignment:
Q  135 ccaacgtataacctcgttgcttcgccataaagaaactcaacccatagagagaaatagatgggcatctcaatctcacatcacgtagcagtgctgacctatc 234  Q
    |||| |||||| |||||||| |  ||||||||||||||||||   | | |||| ||||||| |||||||||||||| |||||||| ||||| ||| | ||    
T  29336710 ccaaggtataatctcgttgcctatccataaagaaactcaacc---ataaagaagtagatggacatctcaatctcacctcacgtagtagtgccgacttgtc 29336614  T
Q  235 taccaagttgaaggcattcgaaaaatcta 263  Q
    |||||||||| ||| ||||||||||||||    
T  29336613 taccaagttgtagggattcgaaaaatcta 29336585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 6820873 - 6820790
Alignment:
Q  1 agataccaaacatgaagaagaagcttgcaactatttctaatctgatgaataagagggtgtaacataagagcaaaaaggagcgtc 84  Q
    ||||||||| |||||| ||||||||||||||||| | | |  |||||||||||||||||||||| ||||| |||||||||||||    
T  6820873 agataccaagcatgaaaaagaagcttgcaactatctttgaattgatgaataagagggtgtaacaaaagagaaaaaaggagcgtc 6820790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 81
Target Start/End: Complemental strand, 23808400 - 23808328
Alignment:
Q  9 aacatgaagaagaagcttgcaactatttctaatctgatgaataagagggtgtaacataagagcaaaaaggagc 81  Q
    |||||||||||||||||  ||||||| |  | | | ||||||||||| |||||||| ||||||||||||||||    
T  23808400 aacatgaagaagaagctcacaactatcttcagtataatgaataagagagtgtaacacaagagcaaaaaggagc 23808328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University