View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5057_high_5 (Length: 352)
Name: NF5057_high_5
Description: NF5057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5057_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 274; Significance: 1e-153; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 13 - 318
Target Start/End: Original strand, 51502213 - 51502518
Alignment:
| Q |
13 |
tatccttggtccaagaataagttagttgatgagcaccctttgatgtcattgatagcttcacagtctaaatcttgattaaagtcacccttctctacatcaa |
112 |
Q |
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| T |
51502213 |
tatccttggtccaagaatgagttagttgatgagcaccctttgatgtcattgatagcttcacagtctaaatcttgattaaagtcacccttctctacatcca |
51502312 |
T |
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| Q |
113 |
atgctggactaattcatgttttttgaaatgtctaacgtacattcttgaagtgcaataatttgaagttactttaggaagatgactacctagaggaatgaca |
212 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
51502313 |
attctggactaattcatgttttttgaaatgtctaacgtacattcttcaagtgcaatagtttgaagttactttaggaagatgactacctagaggaatgaca |
51502412 |
T |
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| Q |
213 |
caatcaagattctttttcccattttgagtaacacaaatgaagattggaacaagctgctcactacggtggaaattctaatgattttattactataactaag |
312 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| |
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| T |
51502413 |
caatcaagattctttttcccattttgagtaatacaaatgaagattggaacaagctggtcactacggtggaaattctaataattttattactataactaag |
51502512 |
T |
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| Q |
313 |
ctaaga |
318 |
Q |
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|||||| |
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| T |
51502513 |
ctaaga |
51502518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 52 - 318
Target Start/End: Original strand, 51499182 - 51499448
Alignment:
| Q |
52 |
ttgatgtcattgatagcttcacagtctaaatcttgattaaagtcacccttctctacatcaaatgctggactaattcatgttttttgaaatgtctaacgta |
151 |
Q |
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|||||||||||||||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||| |||||||||||| ||||||| |
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| T |
51499182 |
ttgatgtcattgatagcttcacagtctaaatcttgactgaagtcaccattctctacatcaaatgctggactaattcatg-tttttgaaatgtttaacgta |
51499280 |
T |
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| Q |
152 |
cattcttgaagtgcaataatttgaagttactttaggaagatgactacctagagga--atgacacaatcaagattctttttcccattttgagtaacacaaa |
249 |
Q |
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||||||||||||| |||||||||||||||| | |||||| ||||||||||||| ||||||||||| |||||||||||||||||||||| ||||| || |
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| T |
51499281 |
tattcttgaagtgcgataatttgaagttactgcaagaagataactacctagaggaatatgacacaatc-agattctttttcccattttgagcaacactaa |
51499379 |
T |
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| Q |
250 |
tgaagattggaacaagctgctcactacggtggaaattctaatgattttattactataactaagctaaga |
318 |
Q |
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||||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||| || ||||||| |
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| T |
51499380 |
tgaagattggaacaagctgttcactaaggtggaaattctagtgattttattactataaataggctaaga |
51499448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 13 - 54
Target Start/End: Original strand, 51499101 - 51499142
Alignment:
| Q |
13 |
tatccttggtccaagaataagttagttgatgagcaccctttg |
54 |
Q |
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|||||||||||||||||| |||| |||||||||||||||||| |
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| T |
51499101 |
tatccttggtccaagaatgagttggttgatgagcaccctttg |
51499142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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