View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5057_high_7 (Length: 339)
Name: NF5057_high_7
Description: NF5057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5057_high_7 |
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| [»] chr4 (5 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 285; Significance: 1e-160; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 15 - 339
Target Start/End: Complemental strand, 51502259 - 51501935
Alignment:
| Q |
15 |
gacatcaaagggtgctcatcaactaacttattcttggaccaaggatataaaagtagagtgaaaatcaactacagtttaaacaatagagtgaaaatcaaga |
114 |
Q |
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| T |
51502259 |
gacatcaaagggtgctcatcaactaactcattcttggaccaaggatataaaagtagagtgaaaatcaactacagtttgaacagtagagtgacaatcaaga |
51502160 |
T |
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| Q |
115 |
aaaaataactgattcaaggtgagatatcgcactgaaaacagaggattatcaaggattcatgcacacctggagttgacaattcacaattatttaataaaat |
214 |
Q |
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| T |
51502159 |
aaaaataactgattcaaggtgagacatcacacagaaaacagaggattatcaaagattcatgcacacctggagttgataattcacaattatttaataaaat |
51502060 |
T |
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| Q |
215 |
gaagagactaggttgtcacatgattacattttcaagtggtatatccacaaactaatttttactggtaaatttattaatgtggctaattttcgttgtttgt |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51502059 |
gaagagactaggttgtcacatgattacattttcaagtggtatatccacaaactaatttttactggtaaatttattaatgtggctaattttcgttgtttgt |
51501960 |
T |
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| Q |
315 |
tgagtaaattacacacaattcttca |
339 |
Q |
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| T |
51501959 |
tcagtaaattacacacaattcttca |
51501935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 75 - 222
Target Start/End: Complemental strand, 51497187 - 51497040
Alignment:
| Q |
75 |
aaaatcaactacagtttaaacaatagagtgaaaatcaagaaaaaataactgattcaaggtgagatatcgcactgaaaacagaggattatcaaggattcat |
174 |
Q |
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| T |
51497187 |
aaaatcaactacagtttgaacagtagagtgaaaatcaagaaaaaataactgattcaaggtgagacatcgcactgaaaacagaggattatcaaagattcat |
51497088 |
T |
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| Q |
175 |
gcacacctggagttgacaattcacaattatttaataaaatgaagagac |
222 |
Q |
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| T |
51497087 |
gcacacctggagttgacaattcacaattatttaataaaataaagagac |
51497040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 274 - 337
Target Start/End: Original strand, 24750494 - 24750557
Alignment:
| Q |
274 |
tactggtaaatttattaatgtggctaattttcgttgtttgttgagtaaattacacacaattctt |
337 |
Q |
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| T |
24750494 |
tacttgtacatttattgatgtggctaattttcattgtttgatgagtaaattacccacaattctt |
24750557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 62
Target Start/End: Complemental strand, 51499142 - 51499100
Alignment:
| Q |
20 |
caaagggtgctcatcaactaacttattcttggaccaaggatat |
62 |
Q |
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| T |
51499142 |
caaagggtgctcatcaaccaactcattcttggaccaaggatat |
51499100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 283 - 322
Target Start/End: Original strand, 24765512 - 24765551
Alignment:
| Q |
283 |
atttattaatgtggctaattttcgttgtttgttgagtaaa |
322 |
Q |
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| T |
24765512 |
atttattaatgtggctaattttcatagtttgttgagtaaa |
24765551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 334
Target Start/End: Complemental strand, 34387313 - 34387260
Alignment:
| Q |
281 |
aaatttattaatgtggctaattttcgttgtttgttgagtaaattacacacaatt |
334 |
Q |
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| T |
34387313 |
aaatttatccatgtggctaattttcattgcttgttggataaattacacacaatt |
34387260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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