View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5057_low_1 (Length: 637)
Name: NF5057_low_1
Description: NF5057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5057_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 532; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 532; E-Value: 0
Query Start/End: Original strand, 18 - 627
Target Start/End: Complemental strand, 3639345 - 3638740
Alignment:
| Q |
18 |
tgaaggtgtagtgattgtgggaagaagaacaagagagcatttgattgcagaggttgaagaaagctttgccattatcgtgtgattttgaaagaagtttaag |
117 |
Q |
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| T |
3639345 |
tgaaggtgtagtgattgtgggaagaagaacaagagagcatttgattgcagaggttgaagaaagctttgacattatcgtgtgattttgaaagaagtttaag |
3639246 |
T |
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| Q |
118 |
gttttgatttaacaattggggattagggtttatgatttgaaattgagcgagcttcgctatttgattcagattctgaggcttcatttgtattcttgttaat |
217 |
Q |
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| T |
3639245 |
gttttgatttaacaattggggattagggtttatgatttgaaattgagagagcttcgctatttgattcagattctgaggcttcatttgtattcttgttaat |
3639146 |
T |
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| Q |
218 |
ctgaagctccatttagtatttagtttagatgagttgggtggtctcgactcgagagtagtagtaacttgtaacagtcatgcttgagttagaag---ttggg |
314 |
Q |
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| T |
3639145 |
ctgaagctccatttagtatttagtttagatgagtcgggtggtctcga-----gagtagtagtaactagtaacagtcatgcttgagttagaagaagttggg |
3639051 |
T |
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| Q |
315 |
ggaaaattgcatttttccctccaacccggaatgtatttgggttataaaatcgtccgggtcgtgtgtgtttaaacgggtcggtccggtttattatgcaaat |
414 |
Q |
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| T |
3639050 |
ggaaaattgtatttttccctccaacccggaatgtatttgggttataaaatcgtccgggtcgtgtgt--ttaaacgggtcggtccggtttattatgcaaat |
3638953 |
T |
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| Q |
415 |
aaaattacccggttttgtttccaaaaacacttttgcctcctaagttcatagcttcttcaatcacctctcgtacactgtacgagattcttagtgcaattcg |
514 |
Q |
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| T |
3638952 |
aaaattacccggttttgtttccaaaaacacttttgcctcctaagttcatagcttcttcaattacctctcgtacactgtacgagattcttagtacaattcg |
3638853 |
T |
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| Q |
515 |
attttgctcatttgaactcttgtattcgtttttgtgtgccagtagcgtgtgattctgtgaaatttgttggatagtttgattcaggagaaaaggtttgtag |
614 |
Q |
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| T |
3638852 |
attttgctcatttaaactcttgtattcgtttttgtctgccagtagcgtgtgattctgtgaaatttgttggatagtttgattcaggagaaaaggtttgtag |
3638753 |
T |
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| Q |
615 |
ttttatgcctatg |
627 |
Q |
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| T |
3638752 |
ttttatgcctatg |
3638740 |
T |
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