View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5058-Insertion-2 (Length: 1069)
Name: NF5058-Insertion-2
Description: NF5058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5058-Insertion-2 |
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Alignment Details
Target: chr3 (Bit Score: 578; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 578; E-Value: 0
Query Start/End: Original strand, 284 - 928
Target Start/End: Original strand, 15864953 - 15865598
Alignment:
| Q |
284 |
atatttgtctaaacttgtattttcaaaatccaattaccggttgactaagttgagtcatttttaacatttttattattcacatctgaatctcaaagacctt |
383 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15864953 |
atatttgtctaaacttgtattttcaaaatccaattaccggttgactaagttgagtcatttttaacatttttattattcacatctgaatctcaaagacctt |
15865052 |
T |
|
| Q |
384 |
cgctgtaagttaaacattaagcaccaaaattcttaaaaccgtcattttcgctcttactactagtactatgtttttgtagaggatagattttggtgaatgt |
483 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15865053 |
cgctgtaagttaaacattaagcaccaaaattcttaaaaccgtcattttcgctcttactactagtactatgtttttgtagaggatagattttggtgaatgt |
15865152 |
T |
|
| Q |
484 |
tagatctgccaaaagagttttgatcactttttcatgtattgtcagagaagttttgtgtcgagcatagaagcccagcttttctgatgatgtgaaagttata |
583 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
15865153 |
tagatctgccaaaagagttttgatcactttttcatgtattgtcagagaagttttgtgtggagcatagaagcccagcttttctgatgatgtgaaagttatg |
15865252 |
T |
|
| Q |
584 |
tcgtaatctgatgtctattgcgctgtggttcccttttctatttgatagggatgtgggtctaggtgtcagtcctaatgttaagcccaaagtttggagtttc |
683 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
15865253 |
tcgtaatctgatgtctattgcgctgtggttcccttttctatttgatagaaatgtgggtctaggtgtcagccctaatgttaagcccaaagtttggagtttc |
15865352 |
T |
|
| Q |
684 |
tatacgaggnnnnnnnnnnnngagaaagggaatgatgaggtggcagatagtgaaacagaattgccaaacgtgtgagtgtgaggcaaggaatctgttatta |
783 |
Q |
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| T |
15865353 |
tatacgaggaaaaataagaaagagaaagggaatgatgaggtggcagatagtgaaacagaattgccaaacgtgtgagtgtgaggcaaggaatctgttatta |
15865452 |
T |
|
| Q |
784 |
gtggcggagtgagggtagaggggatcaacaagctaccattctctgaaggggaactgctctgtgcatcttaggagtcttagttctttgctataatttcctt |
883 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15865453 |
gtggcagagtgagggtagaggggatcaacaagctaccattctctgaaggggaactgctctgtgcatcttaggagtcttagttctttgctataatttcctt |
15865552 |
T |
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| Q |
884 |
tcac-aaataatacagatcaattcccctcattgactgcatcattgt |
928 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
15865553 |
tcacaaaataatacagatcaattcccctcattgactgcatcattgt |
15865598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 242; E-Value: 1e-133
Query Start/End: Original strand, 7 - 286
Target Start/End: Original strand, 15864512 - 15864784
Alignment:
| Q |
7 |
atttggcattgttaataacatgcaaattttatggtttgccaatttttacgctgcaggtggagttttgaagtgtggtattaataactagactttgcaacaa |
106 |
Q |
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| T |
15864512 |
atttggcattgttaataacatgcaaattttatggtttgccaatttttacgctgcaggtggagttttgaagtgtggtattaataactagactttgcaacaa |
15864611 |
T |
|
| Q |
107 |
tggttttgataagcgggaataacaaaaggtaagtttaaaagactagtataaaccttctttttagttattgctcctatttgtttagtagactatattaagt |
206 |
Q |
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| T |
15864612 |
tggttttgataagcgggaataacaaaaggtaagtttaaaagactagtataaaccttctttttagttattgctcctatttgtttagtagacta-------t |
15864704 |
T |
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| Q |
207 |
attaacgttctttatgacaatagaacttgtatttggatagagagtacaggggaattagagttaagctggttagaggaata |
286 |
Q |
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| T |
15864705 |
attaacgttctttatgacaatagaacttgtattcggatagagagtacaggggaattagagttaagttagttagaggaata |
15864784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 140; E-Value: 9e-73
Query Start/End: Original strand, 317 - 518
Target Start/End: Original strand, 15866183 - 15866385
Alignment:
| Q |
317 |
ttaccggttgactaagttgagtcatttttaacatttttattattcacatctgaatctcaaagaccttcgctgtaagttaaacattaagcaccaaaattct |
416 |
Q |
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| T |
15866183 |
ttaccggttgactaagttgagtcatttttaacatttt-attattcacatctgaatctcaacgaacttcgctgtaagttaaacattaagcaccaaaattct |
15866281 |
T |
|
| Q |
417 |
taaaaccgtcattttcgctcttactactagtactatgtttttgtagaggatagat-tttggtgaatgttagatctgccaaaagagtttt-gatcactttt |
514 |
Q |
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||||||| ||||||| |||||||||||||||||||||||||||||||| ||| || ||| ||||||||||||| ||||||| ||||||| || ||||||| |
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| T |
15866282 |
taaaaccatcatttttgctcttactactagtactatgtttttgtagagtatatatattttgtgaatgttagatttgccaaatgagttttggaacactttt |
15866381 |
T |
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| Q |
515 |
tcat |
518 |
Q |
| |
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|||| |
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| T |
15866382 |
tcat |
15866385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 73; E-Value: 8e-33
Query Start/End: Original strand, 850 - 1043
Target Start/End: Original strand, 15866709 - 15866912
Alignment:
| Q |
850 |
cttaggagtcttagttctttgctataatttcctttcac-aaataatacagatcaattcccctcattgactgcatcattgttcctttatattt-ttgattt |
947 |
Q |
| |
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||||||||||||| |||| | || ||| |||||||||| ||||||||||||||| ||||||||||| ||||||||||| |||||||| |||| |||||| |
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| T |
15866709 |
cttaggagtcttaattctattctgtaacttcctttcaccaaataatacagatcagttcccctcatttactgcatcatttttcctttacatttactgattt |
15866808 |
T |
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| Q |
948 |
tctgt--aatggtccgagctg-cggat-cgattgtcggaggagatcatttcagag-cagtgt-ggagtgat-aaaatcggatgccaccc-agaagatgga |
1039 |
Q |
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||| | | |||||||||||| ||||| ||||||||||||||||||||||||||| | || | |||||||| ||||||||||||||||| |||||||||| |
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| T |
15866809 |
tctattaattggtccgagctgccggatccgattgtcggaggagatcatttcagagcctgtctgggagtgataaaaatcggatgccacccaagaagatgga |
15866908 |
T |
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| Q |
1040 |
gcta |
1043 |
Q |
| |
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|||| |
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| T |
15866909 |
gcta |
15866912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 705 - 782
Target Start/End: Original strand, 15866563 - 15866640
Alignment:
| Q |
705 |
gagaaagggaatgatgaggtggcagatagtgaaacagaattgccaaacgtgtgagtgtgaggcaaggaatctgttatt |
782 |
Q |
| |
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| T |
15866563 |
gagaaagggaatgatgaggtggcagatggtgaaactgaattgccaaacacgtgactgtgaggcaaggagtctgttatt |
15866640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 558 - 604
Target Start/End: Original strand, 15866400 - 15866446
Alignment:
| Q |
558 |
gcttttctgatgatgtgaaagttatatcgtaatctgatgtctattgc |
604 |
Q |
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| T |
15866400 |
gcttttctgatgatttgaaagttatgttgtaatctggtgtctattgc |
15866446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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