View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5058_high_3 (Length: 385)
Name: NF5058_high_3
Description: NF5058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5058_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 362
Target Start/End: Original strand, 6958304 - 6958665
Alignment:
| Q |
1 |
attatattgtaatatttgattaacacctttagctctctttcaagcaggtttggtttgtggtttctagattacatcaatataagtgttattgtgatttttg |
100 |
Q |
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| T |
6958304 |
attatattgcaatatttgattaacacctttagctctctttcaagcaggtttggtttgtggtttctagattacatcagtataagtgttattgtgatttttg |
6958403 |
T |
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| Q |
101 |
gcttatgttttataaggatggtaatatggtaggaatagttgtaggtttttagtgtcatttgaagtttgaattctgcttgaaaattgtcggtcttactctt |
200 |
Q |
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| T |
6958404 |
gcttatgttttataaggatggtactttggtaggaatagttataggtttttagtgtcatttgaagtttgaattctgcttgaaaattgtcggtcttactctt |
6958503 |
T |
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| Q |
201 |
gaaaaataggcataggtgtaatgtgattccataaacttttgttgattgaatggaaagttgagattcgaaccaatttgacaaagcctgtcaatgatgtgga |
300 |
Q |
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| T |
6958504 |
gaaaaataggcataggtgtaatgtgattccataaacttttgttgattgaatggaaagttgagattcgaaccaatttgacaaagcctgtcaatgatgtgga |
6958603 |
T |
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| Q |
301 |
ctctgtagttacaattagtggtgatgcaactcttcaggtacttactctactatactctaatc |
362 |
Q |
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| T |
6958604 |
ctctgtagttacaattagtggtgatgcaactcttcaggtacttactctactatactctaatc |
6958665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 146 - 242
Target Start/End: Original strand, 31081743 - 31081843
Alignment:
| Q |
146 |
tttttagtgtcatttgaagtttgaattctgcttgaaaattgtcggtcttac---tcttgaaaaataggcat-aggtgtaatgtgattccataaacttttg |
241 |
Q |
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| T |
31081743 |
ttttttgtgtcatttgaagttttaattctgatagaaaattgcaggtcttacacttcttgaataataggaataaggtgcaccatgattccataaacttttg |
31081842 |
T |
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| Q |
242 |
t |
242 |
Q |
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| T |
31081843 |
t |
31081843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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