View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5058_high_6 (Length: 238)
Name: NF5058_high_6
Description: NF5058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5058_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 128; Significance: 3e-66; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 6 - 141
Target Start/End: Complemental strand, 51005940 - 51005805
Alignment:
| Q |
6 |
atggcaatgagttcacaaatgtaggctatattttcagttatttgatgtagttatttataggagtagaggttgtcttttccatgaagaaatttgtaattca |
105 |
Q |
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| T |
51005940 |
atggcaatgagttcataaatgttggctatattttcagttatttgatgtagttatttataggagtagaggttgtcttttccatgaagaaatttgtaattca |
51005841 |
T |
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| Q |
106 |
ttcaaggaagtataggcatatattctctgcttttag |
141 |
Q |
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| T |
51005840 |
ttcaaggaagtataggcatatattctctgcttttag |
51005805 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 135 - 230
Target Start/End: Complemental strand, 51005771 - 51005673
Alignment:
| Q |
135 |
cttttaggaatttatctcctatatt---gtatgttaaaatttggattgatttatcgcttatggatattctttgcttcaaattgtatataggaagaaaat |
230 |
Q |
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| T |
51005771 |
cttttaggaatttatctcctatattattgtatgttaaaatttggattgatttatcgcttatggatattctttgcttcaaattgtatataggaagaaaat |
51005673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 9 - 122
Target Start/End: Original strand, 38741745 - 38741859
Alignment:
| Q |
9 |
gcaatgagttcacaaatgtaggctatatttt-cagttatttgatgtagttatttataggagtagaggttgtcttttccatgaagaaatttgtaattcatt |
107 |
Q |
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||||||||||||||||||||| ||||||||| |||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |
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| T |
38741745 |
gcaatgagttcacaaatgtagcctatatttttcagttaattgatgtagttatttataggagtagaggttatcttttccatgaagaaatttgtagttcatt |
38741844 |
T |
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| Q |
108 |
caaggaagtataggc |
122 |
Q |
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| T |
38741845 |
caaggaagtataggc |
38741859 |
T |
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