View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5058_low_1 (Length: 401)
Name: NF5058_low_1
Description: NF5058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5058_low_1 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 144 - 401
Target Start/End: Original strand, 9733042 - 9733299
Alignment:
| Q |
144 |
ttaatgcccttgatttgtttctgaaaaagtttacaactttaatcttcaatttcttcctccatgttcataaggtaaaagggtcgctcaaatccatcttttt |
243 |
Q |
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| T |
9733042 |
ttaatgcccttgatttgtttctgaaaaagtttacaactttaatcttcaatttcttcctccatgttcataaggtaaaagggtcgctcaaattcatattttt |
9733141 |
T |
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| Q |
244 |
tatcaaaattagacaaagaacaacacaatattaaaaattgctnnnnnnncacaagcatttcacttttgtgtatgaactttgaaagtaaccaaagagagta |
343 |
Q |
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| T |
9733142 |
tatcaaaattagacaaagaacaacacaatattaaaaattgctaaaaaaacacaagcatttcacttttgtgtatgaactttgaaagtaaccaaagagagta |
9733241 |
T |
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| Q |
344 |
ataaaatatgaaattccaaccacaaattattgacctttttcttgttgagaacttcctc |
401 |
Q |
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| T |
9733242 |
ataaaatatgaaattccaaccacaaattattgacctttttcttgttgagaacttcctc |
9733299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 17 - 95
Target Start/End: Original strand, 9732920 - 9732998
Alignment:
| Q |
17 |
cagtattaggaacatccaccaaaggtcctgcacacaacttccataactcttcatacaaatcatcatttttaacacctgc |
95 |
Q |
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| T |
9732920 |
cagtattaggaacatccaccaaaggtcctgcacacaacttccataactcttcatacaaatcatcatttttaacacctgc |
9732998 |
T |
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