View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5058_low_2 (Length: 389)
Name: NF5058_low_2
Description: NF5058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5058_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 108; Significance: 4e-54; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 187 - 378
Target Start/End: Original strand, 39847706 - 39847900
Alignment:
| Q |
187 |
aattcatgctcttgtgtgctgttagaggcatctatctgcatctgtgatggggttgtcggatttctctcttcccgtgtttgttagaacttaacttagaatg |
286 |
Q |
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| T |
39847706 |
aattcatggtcttgtgtgttgttagaggcatctatctgcatctgtgatggggttgtcggatttctctcttcccttgtttgttagaacttaacttagaatg |
39847805 |
T |
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| Q |
287 |
atg---nnnnnnnnnnnnnnnnnnncaaaaccatttatttactacaaaccacaacatgcatgtatgcatgtgtggttctgttatattgactaatc |
378 |
Q |
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| T |
39847806 |
atgtttttttttctttctttcttttcaaaaccatttatttactacaaaccacaacatgcatgtatgcatgtgtgcttctgttatattgactaatc |
39847900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 19 - 138
Target Start/End: Original strand, 39847494 - 39847613
Alignment:
| Q |
19 |
ttacagtagataacaagcacgattaaaagaatcgaaaagtcgaagaaggagaaaaacgaacgcgacataagcaatctggtaaactctgtagtttctcnnn |
118 |
Q |
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| T |
39847494 |
ttacagtagataacaagcacgattaaaagaatcgaaaagtcgaaggaggagaaaaacgaacgcgacataagcaatctggtaaactctgtagtttctcttt |
39847593 |
T |
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| Q |
119 |
nnnnagttatatatgctgta |
138 |
Q |
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| T |
39847594 |
ttttagttatatatgctgta |
39847613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 139 - 176
Target Start/End: Original strand, 39847631 - 39847668
Alignment:
| Q |
139 |
agcaactttagtattattttgggtttagtggaattcga |
176 |
Q |
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| T |
39847631 |
agcaactttagtattattttgggtttagtggaattcga |
39847668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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