View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5058_low_4 (Length: 355)
Name: NF5058_low_4
Description: NF5058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5058_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 18 - 346
Target Start/End: Complemental strand, 43647901 - 43647573
Alignment:
| Q |
18 |
aaaggtagcacacagtatgttgttaaaggatcacagaaagagtttccgcaagagctgctcgaggagttgaaaatcatctgcgaggtacaaaatcctacct |
117 |
Q |
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| T |
43647901 |
aaaggtagcacacagtatgttgttaaaggatcacagaaagagtttccgcaagagctgctcgaggagttgaaaatcatctgcgaggtacaaaatcctacct |
43647802 |
T |
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| Q |
118 |
tatctgaatatctcataaatttgaaacaaagaaagaagatttagaaatgcttgagttggttctaatttgtaccaccaattacatttggaaattacttttg |
217 |
Q |
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| T |
43647801 |
tatctgaatatctcataaatttgaaacaaagaaagaagatttagaaatgcttgagttggttctaatttataccaccaattacatttggaaattacttttg |
43647702 |
T |
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| Q |
218 |
ttcttgctatttattgttaaaaagattgattattaacttttttattatctcatttgttaactttggtttggcgttatcgggaagctggccattcttatta |
317 |
Q |
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| T |
43647701 |
ttcttgctatttattgttaaaaagattgattattaacttatttattatctcatttgttaactttggtttggcgttatcgggaagctggccattcttatta |
43647602 |
T |
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| Q |
318 |
attagttagtcgttcatgttaagaataat |
346 |
Q |
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| T |
43647601 |
attagttagtcgttcatgttaagaataat |
43647573 |
T |
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