View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5058_low_5 (Length: 255)
Name: NF5058_low_5
Description: NF5058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5058_low_5 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 11 - 255
Target Start/End: Complemental strand, 52109297 - 52109053
Alignment:
| Q |
11 |
aacctgtggtgacttatgcttaattcattactcttttgaaacctcaaaatttctttaggaacactgttttcttcacacttgaagccaccttcttcatttt |
110 |
Q |
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| T |
52109297 |
aaccggtggtgaattatgcttaattcattactcttttgaaacctcaaaatttctttaggaacactgttttcttcacacttgaagtcaccttcttcatttt |
52109198 |
T |
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| Q |
111 |
caccacactccatatttctgcactcagtgcttcacttccactgtcaaatcaatgttcacaagaagaaaattcctcaatatactttcatcacgcaatgtta |
210 |
Q |
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| T |
52109197 |
catcacactccatatttctgcactcagtgcttcacttccactgtcaaatcaatgttcacaagaagaaaattcctcaatatactttcatcacgcaatgtta |
52109098 |
T |
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| Q |
211 |
atgtttctaagctaatttctcaccaattaaatccaaatccacttc |
255 |
Q |
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| T |
52109097 |
atgtttccaagctaatttctcaccaattaaatccaaatccacttc |
52109053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 119 - 206
Target Start/End: Complemental strand, 44526294 - 44526207
Alignment:
| Q |
119 |
tccatatttctgcactcagtgcttcacttccactgtcaaatcaatgttcacaagaagaaaattcctcaatatactttcatcacgcaat |
206 |
Q |
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| T |
44526294 |
tccataattctgcacccagtgcttcacttcctctatcaaatcaatgctcacaagaagaaaattcctcactatattctcatcacgcaat |
44526207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 211 - 255
Target Start/End: Complemental strand, 44520388 - 44520344
Alignment:
| Q |
211 |
atgtttctaagctaatttctcaccaattaaatccaaatccacttc |
255 |
Q |
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| T |
44520388 |
atgtttctaagctaatttcacaccaattatatccaaatgcacttc |
44520344 |
T |
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