View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5058_low_6 (Length: 249)

Name: NF5058_low_6
Description: NF5058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5058_low_6
NF5058_low_6
[»] chr4 (3 HSPs)
chr4 (150-238)||(51006269-51006353)
chr4 (1-57)||(51006029-51006085)
chr4 (70-153)||(51006122-51006212)
[»] chr7 (2 HSPs)
chr7 (150-235)||(38741306-38741387)
chr7 (23-58)||(38741577-38741612)


Alignment Details
Target: chr4 (Bit Score: 64; Significance: 4e-28; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 150 - 238
Target Start/End: Original strand, 51006269 - 51006353
Alignment:
Q  150 aaatttggaatttttcctatatatgcttagttattctatgtgatttacttataaaaaagaaaattgcaggtatttctagatctatagta 238  Q
    ||||||||||||||||||||    ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  51006269 aaatttggaatttttcctat----gcttaattattctatgtaatttacttataaaaaagaaaattgcaggtatttctagatctatagta 51006353  T

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Target: chr4; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 51006029 - 51006085
Alignment:
Q  1 cttcttggcttgtttgcgtctatgcaacatgaaatgtacaattaataaaccaatggg 57  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51006029 cttcttggcttgtttgcgtctatgcaacatgaaatgtacaattaataaaccaatggg 51006085  T

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Target: chr4; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 70 - 153
Target Start/End: Original strand, 51006122 - 51006212
Alignment:
Q  70 taatgagtacataactggattaagtacataatatatttcatggataatg--------atggaatagttatatagatagcgagaaaaagaaat 153  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||| ||||    
T  51006122 taatgagtacataactg-attaagtacataatatatttcatggataatgatggaataatggaatagttatatagatagcgagaaaaataaat 51006212  T

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Target: chr7 (Bit Score: 57; Significance: 7e-24; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 150 - 235
Target Start/End: Complemental strand, 38741387 - 38741306
Alignment:
Q  150 aaatttggaatttttcctatatatgcttagttattctatgtgatttacttataaaaaagaaaattgcaggtatttctagatctata 235  Q
    |||| ||||||||||||    |||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||    
T  38741387 aaatctggaatttttcc----tatgcttagttattctatatgatttacttataaaaaataaaattgcaggtatttctagatctata 38741306  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 58
Target Start/End: Complemental strand, 38741612 - 38741577
Alignment:
Q  23 tgcaacatgaaatgtacaattaataaaccaatggga 58  Q
    ||||||||||||||||||||||||||||||||||||    
T  38741612 tgcaacatgaaatgtacaattaataaaccaatggga 38741577  T

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