View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5058_low_8 (Length: 213)
Name: NF5058_low_8
Description: NF5058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5058_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 22 - 196
Target Start/End: Original strand, 6958693 - 6958870
Alignment:
| Q |
22 |
gttcgtgtagatattatcattttaaagattgaaattttatgctgaaaactaattgaaatcaaagtctacaaatttatgagcagtagctagcatattcttt |
121 |
Q |
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| T |
6958693 |
gttcgtgtagatattatcattttaaagattgaaattttatgctgaaaactaattgaaatcaaagtctacaaatttatgagcagtagctagcatattcttt |
6958792 |
T |
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| Q |
122 |
gaattcaatatatt---aaccctatctttattaataggaaagcacaaagaggttccagaagaacattacacataatag |
196 |
Q |
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| T |
6958793 |
gaattcaatatatttagaaccctatctttattaatagtaaagcacaaagaggtttcagaaggacattacacataatag |
6958870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 99; Significance: 5e-49; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 41 - 190
Target Start/End: Complemental strand, 30575384 - 30575232
Alignment:
| Q |
41 |
ttttaaagattgaaattttatgctgaaaactaattgaaatcaaagtctacaaatttatgagcagtagctagcatattctttgaattcaatatatt---aa |
137 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| | |
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| T |
30575384 |
ttttaaagattgaagttttatgctgaaaactaattgaaatcaaagtcttcaaattcatgagcagtagctagcatattctttgaattcaatatattcagga |
30575285 |
T |
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| Q |
138 |
ccctatctttattaataggaaagcacaaagaggttccagaagaacattacaca |
190 |
Q |
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| T |
30575284 |
ccctatctttattaacaggaaaacacagagagattcctgaaggacattacaca |
30575232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 41 - 190
Target Start/End: Complemental strand, 23007116 - 23006964
Alignment:
| Q |
41 |
ttttaaagattgaaattttatgctgaaaactaattgaaatcaaagtctacaaatttatgagcagtagctagcatattctttgaattcaatatatt---aa |
137 |
Q |
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|||||||||||||| |||||||| |||||||||||||||||||||||| |||||| |||||||||||| |||||||||||||||||||||||||| | |
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| T |
23007116 |
ttttaaagattgaagttttatgccgaaaactaattgaaatcaaagtcttcaaattcatgagcagtagcaagcatattctttgaattcaatatattcagga |
23007017 |
T |
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| Q |
138 |
ccctatctttattaataggaaagcacaaagaggttccagaagaacattacaca |
190 |
Q |
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||||||||||||||| |||||| |||| ||||||||| |||| |||||||||| |
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| T |
23007016 |
ccctatctttattaacaggaaaacacagagaggttcctgaaggacattacaca |
23006964 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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