View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5059-Insertion-2 (Length: 401)
Name: NF5059-Insertion-2
Description: NF5059
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5059-Insertion-2 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 280; Significance: 1e-157; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 10 - 401
Target Start/End: Complemental strand, 18048519 - 18048123
Alignment:
| Q |
10 |
gatcgcgtggcatttggcagacatagtaacgacaacaggggacaagtggaaacataactaaaatttaaaaagtctataatcaattaagagaatcattgaa |
109 |
Q |
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| T |
18048519 |
gatctcgtggcgtttgacagacatggtaacgacaacaaggaacaagtggaaacataactaaaattaaaaaaatttataatcaatcaggagaagcattgaa |
18048420 |
T |
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| Q |
110 |
tgaatagttaatgacgcctgatctcaacacaactttttattcatatatttcaactctttttataatatgtgtctaaaacaatcttttcttaaactttcat |
209 |
Q |
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| T |
18048419 |
tgaatagctaatgatgcctaatcccaacacaactttttattcatatatttcaactctttttataatatgtgtctaaaacaatcttttcttaaactttcat |
18048320 |
T |
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| Q |
210 |
ttagaatatttcaaaaatttgaatggacaaaacta-ttcatatttcttgtggattcaatatttatttttcataaatatcgacatacttatttctgtacga |
308 |
Q |
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| T |
18048319 |
ttagaatatttcaaaaatatgaatggacaaaactatttcgcatttcttgtgaattcaatatttatttttcataaatatcaacatacttatttctgtacga |
18048220 |
T |
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| Q |
309 |
ggataactaaacaaattaaacc----aagttctgcttaacaaaacaaattcacccaaaacttggagaattgtactgtatcaccacatgaacccattg |
401 |
Q |
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| T |
18048219 |
agataactaaacaaattaaaccaattaagttctgcttaacaaaacaaattaacccaaaacttggagaattgtactgtatcaccacatgaacccattg |
18048123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 319 - 378
Target Start/End: Complemental strand, 18035882 - 18035823
Alignment:
| Q |
319 |
acaaattaaaccaagttctgcttaacaaaacaaattcacccaaaacttggagaattgtac |
378 |
Q |
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| T |
18035882 |
acaaatcaaaccatgttctacttaacaaaacaaattctcttaaaacttggggaattgtac |
18035823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 103 - 224
Target Start/End: Complemental strand, 30290197 - 30290075
Alignment:
| Q |
103 |
cattgaatgaatagttaatgacgcctgatctcaacacaactttttattcatatatttc-aactctttttataatatgtgtctaaaacaatcttttcttaa |
201 |
Q |
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| T |
30290197 |
cattgaatgattaggtaatgatgtataatcccatcataactttttatttatatattttgaactctttttacagtatgttactaaaacaaccttttcttaa |
30290098 |
T |
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| Q |
202 |
actttcatttagaatatttcaaa |
224 |
Q |
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| T |
30290097 |
acgttgatttagaatattgcaaa |
30290075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 55 - 161
Target Start/End: Complemental strand, 31222867 - 31222760
Alignment:
| Q |
55 |
gtggaaacataactaaaatttaaaaagtctataatcaattaagagaat-cattgaatgaatagttaatgacgcctgatctcaacacaactttttattcat |
153 |
Q |
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| T |
31222867 |
gtggaaacataactaaaatatagaaagtaagtaatcgattaagagagttcattgaatgattatctaacgacgtttaatcccaacacaactttttattcat |
31222768 |
T |
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| Q |
154 |
atatttca |
161 |
Q |
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| T |
31222767 |
ttatttca |
31222760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 157 - 217
Target Start/End: Complemental strand, 18374495 - 18374435
Alignment:
| Q |
157 |
tttcaactctttttataatatgtgtctaaaacaatcttttcttaaactttcatttagaata |
217 |
Q |
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| T |
18374495 |
tttcaactctttttacaatatgttattaaaacaactttttcttaaacttagatttagaata |
18374435 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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