View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5059_high_1 (Length: 573)
Name: NF5059_high_1
Description: NF5059
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5059_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 302; Significance: 1e-169; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 302; E-Value: 1e-169
Query Start/End: Original strand, 27 - 404
Target Start/End: Original strand, 19804799 - 19805176
Alignment:
| Q |
27 |
aaaggcaatgaattgacacgacaatgaaaactaaatcaaaaagctaagggatcaaaagcaatgtgtcttacagcaccagcaatagcacatgaataatatg |
126 |
Q |
| |
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|||||||||||||| ||||| ||||||| |||||||||||||||||||| |||||||||||| |||||||| |||||||||||||||||||||||||| | |
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| T |
19804799 |
aaaggcaatgaatttacacggcaatgaacactaaatcaaaaagctaaggaatcaaaagcaatatgtcttacggcaccagcaatagcacatgaataatagg |
19804898 |
T |
|
| Q |
127 |
gattaaagtagctagcaatcaaacaacgatgaataatagtaaagagactcaatggaaattgaatgaataaataaggatgaaagaaacaaaagcaaataaa |
226 |
Q |
| |
|
||||||||||||||||||| ||||||| | |||||||||||||||||||||||| |||||| ||||||||||||| |||||||||||||| ||||||||| |
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| T |
19804899 |
gattaaagtagctagcaataaaacaactaagaataatagtaaagagactcaatgtaaattggatgaataaataagaatgaaagaaacaaaggcaaataaa |
19804998 |
T |
|
| Q |
227 |
taaataacaacagggatgcagaaatttcaaacagaaactttcagggaccaaattgcacgaaaatgtgaagatgaatctgaaatttatttcttcacaaagt |
326 |
Q |
| |
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||||||| |||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
19804999 |
taaataagaacagggatgcagaaattgcaaacagaaactttcagggaccgaattgcacgaaaatgtaaagatgaatctgaaatttatttcttcacaaagt |
19805098 |
T |
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| Q |
327 |
ggttcgaaaatctcatacaattctgcaggaacgatttttgtttgaatcggaattgaattacagtgaggaatcacaact |
404 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
19805099 |
ggttcgaaaatctcatacaattctgcaggaacgatttttgtttgaatcggaattgaattacagtgagaaatcacaact |
19805176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 490 - 556
Target Start/End: Original strand, 19805261 - 19805327
Alignment:
| Q |
490 |
ccttttatagctctgaaattgcaaccaaatcatctttgcttgagcctaaagatgtggagtgaagatt |
556 |
Q |
| |
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|||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
19805261 |
ccttttatagctctgaaattgccaccacatcatctttgcttgagcctaaagatgtggagtgaagatt |
19805327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 302; Significance: 1e-169; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 302; E-Value: 1e-169
Query Start/End: Original strand, 27 - 404
Target Start/End: Original strand, 27775273 - 27775650
Alignment:
| Q |
27 |
aaaggcaatgaattgacacgacaatgaaaactaaatcaaaaagctaagggatcaaaagcaatgtgtcttacagcaccagcaatagcacatgaataatatg |
126 |
Q |
| |
|
|||||||||||||| ||||| ||||||| |||||||||||||||||||| |||||||||||| |||||||| |||||||||||||||||||||||||| | |
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| T |
27775273 |
aaaggcaatgaatttacacggcaatgaacactaaatcaaaaagctaaggaatcaaaagcaatatgtcttacggcaccagcaatagcacatgaataatagg |
27775372 |
T |
|
| Q |
127 |
gattaaagtagctagcaatcaaacaacgatgaataatagtaaagagactcaatggaaattgaatgaataaataaggatgaaagaaacaaaagcaaataaa |
226 |
Q |
| |
|
||||||||||||||||||| ||||||| | |||||||||||||||||||||||| |||||| ||||||||||||| |||||||||||||| ||||||||| |
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|
| T |
27775373 |
gattaaagtagctagcaataaaacaactaagaataatagtaaagagactcaatgtaaattggatgaataaataagaatgaaagaaacaaaggcaaataaa |
27775472 |
T |
|
| Q |
227 |
taaataacaacagggatgcagaaatttcaaacagaaactttcagggaccaaattgcacgaaaatgtgaagatgaatctgaaatttatttcttcacaaagt |
326 |
Q |
| |
|
||||||| |||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
27775473 |
taaataagaacagggatgcagaaattgcaaacagaaactttcagggaccgaattgcacgaaaatgtaaagatgaatctgaaatttatttcttcacaaagt |
27775572 |
T |
|
| Q |
327 |
ggttcgaaaatctcatacaattctgcaggaacgatttttgtttgaatcggaattgaattacagtgaggaatcacaact |
404 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
27775573 |
ggttcgaaaatctcatacaattctgcaggaacgatttttgtttgaatcggaattgaattacagtgagaaatcacaact |
27775650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 490 - 556
Target Start/End: Original strand, 27775735 - 27775801
Alignment:
| Q |
490 |
ccttttatagctctgaaattgcaaccaaatcatctttgcttgagcctaaagatgtggagtgaagatt |
556 |
Q |
| |
|
|||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27775735 |
ccttttatagctctgaaattgccaccacatcatctttgcttgagcctaaagatgtggagtgaagatt |
27775801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 27 - 387
Target Start/End: Complemental strand, 40578261 - 40577901
Alignment:
| Q |
27 |
aaaggcaatgaattgacacgacaatgaaaactaaatcaaaaagctaagggatcaaaagcaatgtgtcttacagcaccagcaatagcacatgaataatatg |
126 |
Q |
| |
|
|||||||||||||| ||||| ||||||| ||||||||||||||||| || |||||||||||| |||||||| |||||||||||||||||||||||||| | |
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| T |
40578261 |
aaaggcaatgaatttacacggcaatgaacactaaatcaaaaagctatggaatcaaaagcaatatgtcttacggcaccagcaatagcacatgaataatagg |
40578162 |
T |
|
| Q |
127 |
gattaaagtagctagcaatcaaacaacgatgaataatagtaaagagactcaatggaaattgaatgaataaataaggatgaaagaaacaaaagcaaataaa |
226 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |
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| T |
40578161 |
gattaaagtagctagcaatcaaacaactatgaataatagtaaagagactcaatggaaattggatgaataaataagaatgaaagaaacaaaagcaaataaa |
40578062 |
T |
|
| Q |
227 |
taaataacaacagggatgcagaaatttcaaacagaaactttcagggaccaaattgcacgaaaatgtgaagatgaatctgaaatttatttcttcacaaagt |
326 |
Q |
| |
|
||||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
40578061 |
taaataagaacagagatgcagaaattgcaaacagaaactttcagggaccaaattgcacgaaaatgtaaagatgaatctgaaatttatttcttcacaaagt |
40577962 |
T |
|
| Q |
327 |
ggttcgaaaatctcatacaattctgcaggaacgatttttgtttgaatcggaattgaattac |
387 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
40577961 |
ggttcgaaaatctcatacaattctgcaggaacgattattgtttgaatcggaattgaattac |
40577901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 490 - 556
Target Start/End: Complemental strand, 25752370 - 25752304
Alignment:
| Q |
490 |
ccttttatagctctgaaattgcaaccaaatcatctttgcttgagcctaaagatgtggagtgaagatt |
556 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |
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|
| T |
25752370 |
ccttttatagctctgaaattgcaaccaaatcatcttttcttgagcctaaagctgtggagtgaagatt |
25752304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 90 - 180
Target Start/End: Original strand, 32879332 - 32879422
Alignment:
| Q |
90 |
tgtcttacagcaccagcaatagcacatgaataatatggattaaagtagctagcaatcaaacaacgatgaataatagtaaagagactcaatg |
180 |
Q |
| |
|
||||||| |||||||||||| ||||||||||| | |||||||||||||||||||||||||||| |||||||| |||||||| ||| |||| |
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| T |
32879332 |
tgtcttatggcaccagcaataacacatgaataacaaggattaaagtagctagcaatcaaacaacaatgaataacagtaaagaaacttaatg |
32879422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 471 - 521
Target Start/End: Complemental strand, 27439641 - 27439591
Alignment:
| Q |
471 |
tttctgatgagtagcatctccttttatagctctgaaattgcaaccaaatca |
521 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27439641 |
tttctgatgagtagcatctccttttatagctctgaaattgcaaccaaatca |
27439591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 503 - 556
Target Start/End: Complemental strand, 48085900 - 48085847
Alignment:
| Q |
503 |
tgaaattgcaaccaaatcatctttgcttgagcctaaagatgtggagtgaagatt |
556 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||| | ||||||||||||| |
|
|
| T |
48085900 |
tgaaattgcaactaaatcatctttgcttgagcctaaagttctggagtgaagatt |
48085847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 27 - 122
Target Start/End: Original strand, 19312466 - 19312563
Alignment:
| Q |
27 |
aaaggcaatgaattgacacgacaatgaaaactaaatc---aaaaagctaagggatcaaaagcaatgtgtcttacagcaccagcaatagcacatgaataa |
122 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||||||| | ||||| || |||| ||||||||| |||||||| |||||||||| | | ||||||||| |
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| T |
19312466 |
aaaggcaatgaattgacacggcaacgaaaactaaatcattataaagccaa-ggattaaaagcaatatgtcttacggcaccagcaacaactcatgaataa |
19312563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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