View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5059_high_3 (Length: 435)

Name: NF5059_high_3
Description: NF5059
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5059_high_3
NF5059_high_3
[»] chr5 (13 HSPs)
chr5 (20-431)||(24564687-24565095)
chr5 (20-431)||(24605722-24606130)
chr5 (183-362)||(13938899-13939079)
chr5 (16-141)||(32948578-32948703)
chr5 (18-142)||(25581542-25581665)
chr5 (16-150)||(13938736-13938871)
chr5 (183-288)||(25581400-25581506)
chr5 (280-420)||(24143810-24143950)
chr5 (86-143)||(23909027-23909084)
chr5 (183-225)||(23909117-23909159)
chr5 (353-411)||(29483997-29484055)
chr5 (312-345)||(25756314-25756347)
chr5 (194-230)||(25791775-25791811)
[»] chr4 (22 HSPs)
chr4 (18-345)||(20872227-20872549)
chr4 (38-368)||(9886726-9887045)
chr4 (40-150)||(22201232-22201342)
chr4 (74-150)||(12230661-12230737)
chr4 (50-361)||(13267830-13268137)
chr4 (368-424)||(9885820-9885876)
chr4 (50-150)||(18554906-18555006)
chr4 (51-150)||(15888715-15888814)
chr4 (386-431)||(20872175-20872220)
chr4 (50-150)||(15871140-15871239)
chr4 (179-225)||(12230754-12230800)
chr4 (194-356)||(17419428-17419594)
chr4 (194-232)||(19727661-19727699)
chr4 (313-366)||(15870937-15870990)
chr4 (98-150)||(13559555-13559607)
chr4 (313-361)||(18554716-18554764)
chr4 (309-345)||(19727544-19727580)
chr4 (277-363)||(30275169-30275256)
chr4 (85-143)||(13235092-13235150)
chr4 (187-224)||(13559488-13559525)
chr4 (69-138)||(16588315-16588384)
chr4 (101-142)||(17419340-17419381)
[»] chr1 (7 HSPs)
chr1 (187-424)||(17451348-17451586)
chr1 (35-150)||(15544091-15544206)
chr1 (353-417)||(31344279-31344343)
chr1 (100-150)||(17451265-17451315)
chr1 (277-333)||(15544314-15544372)
chr1 (314-361)||(21496633-21496680)
chr1 (327-371)||(15545327-15545371)
[»] scaffold0381 (2 HSPs)
scaffold0381 (38-368)||(11499-11818)
scaffold0381 (368-424)||(12668-12724)
[»] chr2 (8 HSPs)
chr2 (37-367)||(22497189-22497508)
chr2 (203-423)||(29718030-29718253)
chr2 (50-148)||(18985419-18985517)
chr2 (183-226)||(18985348-18985391)
chr2 (319-363)||(26861205-26861249)
chr2 (43-131)||(27473217-27473305)
chr2 (43-131)||(34858395-34858483)
chr2 (43-131)||(34873457-34873545)
[»] scaffold0364 (2 HSPs)
scaffold0364 (16-141)||(14347-14472)
scaffold0364 (313-361)||(14633-14681)
[»] scaffold0385 (1 HSPs)
scaffold0385 (183-367)||(16082-16269)
[»] scaffold0290 (2 HSPs)
scaffold0290 (183-296)||(11899-12011)
scaffold0290 (50-150)||(12037-12137)
[»] chr6 (8 HSPs)
chr6 (69-150)||(22395642-22395723)
chr6 (50-150)||(19545330-19545430)
chr6 (50-131)||(20733447-20733528)
chr6 (313-361)||(19545140-19545188)
chr6 (308-364)||(26587842-26587898)
chr6 (43-131)||(27851967-27852055)
chr6 (313-343)||(22395472-22395502)
chr6 (54-143)||(14746370-14746459)
[»] scaffold0207 (2 HSPs)
scaffold0207 (183-271)||(826-914)
scaffold0207 (16-141)||(952-1076)
[»] chr8 (4 HSPs)
chr8 (353-424)||(27172715-27172791)
chr8 (313-361)||(10454067-10454115)
chr8 (199-232)||(15727707-15727740)
chr8 (199-232)||(17861458-17861491)
[»] chr7 (7 HSPs)
chr7 (50-150)||(11800165-11800265)
chr7 (194-232)||(16068186-16068224)
chr7 (98-150)||(9693178-9693230)
chr7 (183-225)||(16379147-16379189)
chr7 (187-224)||(9693111-9693148)
chr7 (50-131)||(11091415-11091496)
chr7 (43-131)||(46579924-46580012)
[»] chr3 (17 HSPs)
chr3 (98-150)||(10302602-10302654)
chr3 (56-149)||(19186613-19186706)
chr3 (50-150)||(22161555-22161655)
chr3 (51-150)||(16358012-16358111)
chr3 (183-225)||(10341006-10341048)
chr3 (313-367)||(16357810-16357863)
chr3 (313-367)||(21977175-21977229)
chr3 (313-367)||(21999606-21999660)
chr3 (313-367)||(22161801-22161855)
chr3 (183-232)||(27868388-27868437)
chr3 (50-150)||(21976929-21977029)
chr3 (50-150)||(21999360-21999460)
chr3 (313-363)||(19186852-19186902)
chr3 (52-150)||(27868463-27868561)
chr3 (313-345)||(10302789-10302821)
chr3 (98-150)||(10340928-10340980)
chr3 (43-131)||(52989061-52989149)
[»] scaffold0118 (1 HSPs)
scaffold0118 (50-142)||(11779-11871)
[»] scaffold0010 (1 HSPs)
scaffold0010 (194-232)||(143050-143088)
[»] scaffold0153 (2 HSPs)
scaffold0153 (43-131)||(12081-12169)
scaffold0153 (43-131)||(5061-5149)
[»] scaffold1043 (1 HSPs)
scaffold1043 (84-142)||(723-781)
[»] scaffold0170 (1 HSPs)
scaffold0170 (194-232)||(18099-18137)
[»] scaffold0408 (1 HSPs)
scaffold0408 (54-143)||(14806-14895)
[»] scaffold0686 (1 HSPs)
scaffold0686 (43-131)||(1200-1288)
[»] scaffold0174 (1 HSPs)
scaffold0174 (43-131)||(13398-13486)
[»] scaffold0032 (1 HSPs)
scaffold0032 (43-131)||(68058-68146)


Alignment Details
Target: chr5 (Bit Score: 317; Significance: 1e-179; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 20 - 431
Target Start/End: Original strand, 24564687 - 24565095
Alignment:
Q  20 ctgcgatttaacttcggggaaccctttttgactccgttttcgatcatatactctccaaaatcggccctaatctttatcccatgattaccctatcattcaa 119  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  24564687 ctgcgatttaactttggggaaccctttttgactccgttttcgatcatatactctctaaaatcggccctaatctttatcccatgattaccctatcattcaa 24564786  T
Q  120 acattaattatttgttaacctaccagattatatactcatcttaagtctgnnnnnnnnncttcgattcaaaaacataaattagttttcctcaattctcatc 219  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||          ||| |||||||||||||||||||||||||||||||||||||     
T  24564787 acattaactatttgttaacctaccagattatatactcatcttaagtct--taaaaaaactt-gattcaaaaacataaattagttttcctcaattctcatt 24564883  T
Q  220 tttcaacttcatcnnnnnnnncgttcatcataaatctctcatcaaaatctcacatattaacaacaacatcatattaagaattaaaagaccccgtcatata 319  Q
    |||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24564884 tttcaacttcatcttttatttcgttcatcataaatctctcatcaaaatctcacatattaacaacaacatcatattaagaattaaaagaccccgtcatata 24564983  T
Q  320 ttaagataccctaaagtgcaaagatttttcccattacctcgaattctccaaaaatgcggtgtttggctctcttcttcttagctagggtttccttctctcc 419  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  24564984 ttaagagaccctaaagtgcaaagatttttcccattacctcgaattctccaaaaacgcggtgtttggctctcttcttcttagctagggtttccttctctcc 24565083  T
Q  420 tctctgctcctc 431  Q
    ||||| ||||||    
T  24565084 tctcttctcctc 24565095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 20 - 431
Target Start/End: Original strand, 24605722 - 24606130
Alignment:
Q  20 ctgcgatttaacttcggggaaccctttttgactccgttttcgatcatatactctccaaaatcggccctaatctttatcccatgattaccctatcattcaa 119  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  24605722 ctgcgatttaactttggggaaccctttttgactccgttttcgatcatatactctctaaaatcggccctaatctttatcccatgattaccctatcattcaa 24605821  T
Q  120 acattaattatttgttaacctaccagattatatactcatcttaagtctgnnnnnnnnncttcgattcaaaaaca-taaattagttttcctcaattctcat 218  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||          ||| |||||||||||| |||||||||||||||||||||||||    
T  24605822 acattaactatttgttaacctaccagattatatactcatcttaagtct--taaaaaaacttagattcaaaaacaataaattagttttcctcaattctcat 24605919  T
Q  219 ctttcaacttcatcnnnnnnnncgttcatcataaatctctcatcaaaatctcacatattaacaacaacatcatattaagaattaaaagaccccgtcatat 318  Q
     |||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24605920 ttttcaacttcatcttttatttcgttcatcataaatctctcatcaaaatctcacatattaacaacaacatcatattaagaattaaaagaccccgtcatat 24606019  T
Q  319 attaagataccctaaagtgcaaagatttttcccattacctcgaattctccaaaaatgcggtgtttggctctcttcttcttagctagggtttccttctctc 418  Q
    ||||||| ||||||||||||||||| |||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||    
T  24606020 attaagagaccctaaagtgcaaaga-ttttcccattacctcgaattctcc-aaaacgcggtgtttggctctcttcttcttagctagggtttccttctctc 24606117  T
Q  419 ctctctgctcctc 431  Q
    |||||| ||||||    
T  24606118 ctctcttctcctc 24606130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 183 - 362
Target Start/End: Original strand, 13938899 - 13939079
Alignment:
Q  183 attcaaaaacataaattagttttcctcaattctcatctttcaacttcatcnnnnnnnncgttcatcataaatctctcatcaaaatctcacatattaacaa 282  Q
    ||||||| || |||| |||||||||||||||||||||||||||||| |||        ||||||||||||||||||||||||||||||||||  ||||||    
T  13938899 attcaaatacctaaactagttttcctcaattctcatctttcaactttatctttcaattcgttcatcataaatctctcatcaaaatctcacatcataacaa 13938998  T
Q  283 caacatcatattaagaattaaaagacc--ccgtcatatattaagataccctaaagtgcaaagatttttcccattacctcgaa 362  Q
    ||||| ||| ||||||||||||  |||  || |||||||||||||||| |||||||||||||||| ||||  ||||||||||    
T  13938999 caacaacatcttaagaattaaac-accgtccatcatatattaagatacactaaagtgcaaagattcttcctcttacctcgaa 13939079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 16 - 141
Target Start/End: Original strand, 32948578 - 32948703
Alignment:
Q  16 tctgctgcgatttaacttcggggaaccctttttgactccgttttcgatcatatactctccaaaatcggccctaatctttatcccatgattaccctatcat 115  Q
    ||||||||||||| |||| |||||||||||||  |||  ||||| |||||||||||||||||| ||| |||||||||| | ||||||||||| |||||||    
T  32948578 tctgctgcgatttcactttggggaacccttttctactttgtttttgatcatatactctccaaattcgaccctaatcttcaccccatgattacactatcat 32948677  T
Q  116 tcaaacattaattatttgttaaccta 141  Q
    ||||||| ||||| ||||| ||||||    
T  32948678 tcaaacactaattctttgtcaaccta 32948703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 18 - 142
Target Start/End: Complemental strand, 25581665 - 25581542
Alignment:
Q  18 tgctgcgatttaacttcggggaaccctttttgactccgttttcgatcatatactctccaaaatcggccctaatctttatcccatgattaccctatcattc 117  Q
    ||||||| ||| |||||||| ||||||||| ||||||||||| |||| ||||||||||||| ||| |||||||||| | ||||||||||| |||||| |     
T  25581665 tgctgcgttttcacttcggg-aacccttttcgactccgtttttgatcgtatactctccaaactcgaccctaatcttcaccccatgattacactatcaatt 25581567  T
Q  118 aaacattaattatttgttaacctac 142  Q
     |||| ||||| |||||||||||||    
T  25581566 gaacactaattctttgttaacctac 25581542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 16 - 150
Target Start/End: Original strand, 13938736 - 13938871
Alignment:
Q  16 tctgctgcgatttaacttcggggaaccctttttgactccgttttcg-atcatatactctccaaaatcggccctaatctttatcccatgattaccctatca 114  Q
    |||||||||||||  ||| ||||||||||||| |||||| ||||   ||| | |||||| |||| ||| || ||||||| | | ||||| ||| |||| |    
T  13938736 tctgctgcgatttcgctttggggaacccttttagactccatttttttatcttttactctgcaaactcgaccataatcttcaccgcatgactactctataa 13938835  T
Q  115 ttcaaacattaattatttgttaacctaccagattat 150  Q
    |||||||| ||||| |||||||||||||| ||||||    
T  13938836 ttcaaacactaattctttgttaacctaccggattat 13938871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 183 - 288
Target Start/End: Complemental strand, 25581506 - 25581400
Alignment:
Q  183 attcaaaaacataaattagttttcctcaattctcatctttcaacttcatcnnnnnnnncgttcatcataaatctctcatcaaaatctca-catattaaca 281  Q
    |||||||||  ||||  |||||| ||||||||||||||||||||||||||        ||||||||||||||||||||||| | ||||| ||||  ||||    
T  25581506 attcaaaaagttaaacaagttttactcaattctcatctttcaacttcatcttttaattcgttcatcataaatctctcatcacagtctcatcataacaaca 25581407  T
Q  282 acaacat 288  Q
    |||||||    
T  25581406 acaacat 25581400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 280 - 420
Target Start/End: Complemental strand, 24143950 - 24143810
Alignment:
Q  280 caacaacatcatattaagaattaaaagacccc-gtcatatattaagataccctaaagtgcaaagatttttcccattacctcgaattctccaaaaatgcgg 378  Q
    |||||||||||| ||||||||||||  ||||| || ||  | |||| |||||||||||| || |||| | ||| ||||||| |||||||  |||| | ||    
T  24143950 caacaacatcatcttaagaattaaacaacccccgttattaaataaggtaccctaaagtgaaaggattctcccc-ttacctccaattctcggaaaacgtgg 24143852  T
Q  379 tgtttggctctcttcttcttagctagggtttccttctctcct 420  Q
     | ||||||||| ||| ||||||||||||||||| |||||||    
T  24143851 cgattggctctcctctccttagctagggtttcctcctctcct 24143810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 86 - 143
Target Start/End: Original strand, 23909027 - 23909084
Alignment:
Q  86 ctaatctttatcccatgattaccctatcattcaaacattaattatttgttaacctacc 143  Q
    ||||||||||  |||||||||||||||||| ||||||  |||| ||||||||||||||    
T  23909027 ctaatctttactccatgattaccctatcatgcaaacacaaattctttgttaacctacc 23909084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 183 - 225
Target Start/End: Original strand, 23909117 - 23909159
Alignment:
Q  183 attcaaaaacataaattagttttcctcaattctcatctttcaa 225  Q
    |||||||||| |||| |||||||||||||||| ||||||||||    
T  23909117 attcaaaaacttaaactagttttcctcaattcccatctttcaa 23909159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 353 - 411
Target Start/End: Original strand, 29483997 - 29484055
Alignment:
Q  353 ttacctcgaattctccaaaaatgcggtgtttggctctcttcttcttagctagggtttcc 411  Q
    |||||||||| | ||||||  || |||| ||||||||||||| ||||||||||||||||    
T  29483997 ttacctcgaaatatccaaatttgtggtgcttggctctcttctccttagctagggtttcc 29484055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 312 - 345
Target Start/End: Complemental strand, 25756347 - 25756314
Alignment:
Q  312 gtcatatattaagataccctaaagtgcaaagatt 345  Q
    |||||| |||||||||||||||||||||||||||    
T  25756347 gtcatagattaagataccctaaagtgcaaagatt 25756314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 194 - 230
Target Start/End: Original strand, 25791775 - 25791811
Alignment:
Q  194 taaattagttttcctcaattctcatctttcaacttca 230  Q
    |||| ||||||| ||||||||||||||||||||||||    
T  25791775 taaactagtttttctcaattctcatctttcaacttca 25791811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 111; Significance: 7e-56; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 18 - 345
Target Start/End: Complemental strand, 20872549 - 20872227
Alignment:
Q  18 tgctgcgatttaacttcggggaaccctttttgactccgttttcgatcatatactctccaaaatcggccctaatcttta-tcccatgattaccctatcatt 116  Q
    |||||||||||  ||| ||||||||||||| |||||||||||||||||| ||||||||||| ||| ||||||| || | | |||||||||||||||||||    
T  20872549 tgctgcgatttcgctttggggaacccttttcgactccgttttcgatcatgtactctccaaactcgaccctaatattcacttccatgattaccctatcatt 20872450  T
Q  117 caaacattaattatttgttaacctaccagattatatactcatcttaagtctgnnnnnnnnncttcgattcaaaaacataaattagttttcctcaattctc 216  Q
    |||||| ||||| || ||||||||||||||||||  |||| | |||||||             || |||||||    |||| ||||||||||||||| |     
T  20872449 caaacactaattcttcgttaacctaccagattatccactctttttaagtc-----aaaaaaactcaattcaaagtactaaactagttttcctcaattatg 20872355  T
Q  217 atctttcaacttcatcnnnnnnnncgttcatcataaatctctcatcaaaatctcacatattaacaacaacatcatattaagaattaaaagaccccgtcat 316  Q
    || |||||||||||||        |||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||| |||  |||||    
T  20872354 atatttcaacttcatcttttaattcgttcatcgtaaatctctcatcacaatctcacataataacaacaacatcatattaagaagtaaaa-accatgtcat 20872256  T
Q  317 atattaagataccctaaagtgcaaagatt 345  Q
    |||||||||||||| ||||||||||||||    
T  20872255 atattaagatacccaaaagtgcaaagatt 20872227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 38 - 368
Target Start/End: Original strand, 9886726 - 9887045
Alignment:
Q  38 gaaccctttttgactccgttttcgatcatatactctccaaaatcggccctaatctttatcccatgattaccctatcattcaaacattaattatttgttaa 137  Q
    |||||||||||||| |||||||||||| |||| |||||||| |||||| ||||||| | | |||||||| | |||| || ||||| ||||| ||||||||    
T  9886726 gaaccctttttgacaccgttttcgatcctatattctccaaactcggccgtaatcttcacctcatgattatcttatcgttgaaacactaattctttgttaa 9886825  T
Q  138 cctaccagattatatactcatcttaagtctgnnnnnnnnncttcgattcaaaaacataaattagttttcctcaattctcatctttcaacttcatcnnnnn 237  Q
    | |||| ||||||  |||||| ||||| ||            || ||||||||||||||| |||||||| ||||||||||||||||| || ||||         
T  9886826 cttaccggattatccactcattttaaggctaaaaaaac----tcaattcaaaaacataaactagttttcttcaattctcatctttcatctgcatctttta 9886921  T
Q  238 nnncgttcatcataaatctctcatcaaaatctcacatattaacaacaacatcatattaagaattaaaagaccccgtcatatattaagataccctaaagtg 337  Q
       |||| |||||||||||||||||| ||||||||||  ||||| ||||      ||||||| ||||   ||||||||||||||||||||||||||||||    
T  9886922 attcgtttatcataaatctctcatcacaatctcacatcataacatcaac------ttaagaaataaacacccccgtcatatattaagataccctaaagtg 9887015  T
Q  338 caaagatttttcccattacctcgaattctcc 368  Q
    |||||| || |||| ||| ||||||||||||    
T  9887016 caaaga-ttctccccttaactcgaattctcc 9887045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 40 - 150
Target Start/End: Original strand, 22201232 - 22201342
Alignment:
Q  40 accctttttgactccgttttcgatcatatactctccaaaatcggccctaatctttatcccatgattaccctatcattcaaacattaattatttgttaacc 139  Q
    |||||||| ||||||||||||||| |||||||||||||| | | ||||||  || ||| ||||| |||||||||||| ||||| ||||| || |||||||    
T  22201232 acccttttcgactccgttttcgattatatactctccaaacttgaccctaaaattcatctcatgactaccctatcatttaaacactaattcttcgttaacc 22201331  T
Q  140 taccagattat 150  Q
    |||||||||||    
T  22201332 taccagattat 22201342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 74 - 150
Target Start/End: Original strand, 12230661 - 12230737
Alignment:
Q  74 ccaaaatcggccctaatctttatcccatgattaccctatcattcaaacattaattatttgttaacctaccagattat 150  Q
    ||||| ||| ||||||||||||  ||||||||||||||||||||||||| ||||| || ||||||||||||||||||    
T  12230661 ccaaactcgaccctaatctttaatccatgattaccctatcattcaaacactaattcttcgttaacctaccagattat 12230737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 50 - 361
Target Start/End: Original strand, 13267830 - 13268137
Alignment:
Q  50 actccgttttcgatcatatactctccaaaatcggccctaatctttatcccatgattaccctatcattcaaacattaattatttgttaacctaccagatta 149  Q
    ||||||||||||| | || |||| ||||| ||| |||||||||| |  |||||| |||||||||||||||| | ||||| || ||||||||||| |||||    
T  13267830 actccgttttcgaccctaaactcaccaaactcgaccctaatcttcactccatgactaccctatcattcaaaaactaattcttcgttaacctacctgatta 13267929  T
Q  150 tatactcatcttaagtctgnnnnnnnnncttcgattcaaaaacataaattagttttcctcaattctcatctttcaacttcatcnnnnnnnncgttcatca 249  Q
    |  |||  | ||||| ||            || |||||||||  |||| ||||||| ||||||| ||||||||||||||||||        |||||||||    
T  13267930 tccactttttttaagactaaaac-------tcaattcaaaaatctaaactagttttactcaattgtcatctttcaacttcatctttcaattcgttcatca 13268022  T
Q  250 taaatctctcatcaaaatctcacatattaacaacaacatcatattaagaattaa-aagac---cccgtcatatattaagataccctaaagtgcaaagatt 345  Q
    | | |||||| ||||||| ||||||  |||||||||||   |||||| | |||| || ||   ||| ||||| |||||||||||||||||||||||||||    
T  13268023 tcattctctcgtcaaaat-tcacatcataacaacaacaatgtattaaaatttaagaaaaccctcccatcataaattaagataccctaaagtgcaaagatt 13268121  T
Q  346 tttcccattacctcga 361  Q
     | ||| |||||||||    
T  13268122 ctcccccttacctcga 13268137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 368 - 424
Target Start/End: Complemental strand, 9885876 - 9885820
Alignment:
Q  368 caaaaatgcggtgtttggctctcttcttcttagctagggtttccttctctcctctct 424  Q
    ||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||    
T  9885876 caaaaatgcggtgtttggctctcttctccttagctagggtttcctcctctcttctct 9885820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 50 - 150
Target Start/End: Complemental strand, 18555006 - 18554906
Alignment:
Q  50 actccgttttcgatcatatactctccaaaatcggccctaatctttatcccatgattaccctatcattcaaacattaattatttgttaacctaccagatta 149  Q
    ||||||||||||| | || |||| |||||  || |||||||||| |  |||| || ||||||||||||||||| ||||| || |||||||||||||||||    
T  18555006 actccgttttcgaccctaaactcgccaaacccgaccctaatcttcactccatcatcaccctatcattcaaacactaattcttcgttaacctaccagatta 18554907  T
Q  150 t 150  Q
    |    
T  18554906 t 18554906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 51 - 150
Target Start/End: Complemental strand, 15888814 - 15888715
Alignment:
Q  51 ctccgttttcgatcatatactctccaaaatcggccctaatctttatcccatgattaccctatcattcaaacattaattatttgttaacctaccagattat 150  Q
    |||||||||||| | || |||| ||||| ||| |||||||||| |  |||||| |||||||||||| ||||| ||||| || ||||||||||| ||||||    
T  15888814 ctccgttttcgaccctaaactcgccaaactcgaccctaatcttcactccatgactaccctatcattgaaacactaattcttcgttaacctacctgattat 15888715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 386 - 431
Target Start/End: Complemental strand, 20872220 - 20872175
Alignment:
Q  386 ctctcttcttcttagctagggtttccttctctcctctctgctcctc 431  Q
    ||||||||||||||||||||||||||| ||||||||||| ||||||    
T  20872220 ctctcttcttcttagctagggtttcctcctctcctctcttctcctc 20872175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 50 - 150
Target Start/End: Complemental strand, 15871239 - 15871140
Alignment:
Q  50 actccgttttcgatcatatactctccaaaatcggccctaatctttatcccatgattaccctatcattcaaacattaattatttgttaacctaccagatta 149  Q
    ||||||||||||| | || |||| ||||| ||| |||||||||| |  |||||| |||||||||||| ||||| |||||  ||||||||||||| |||||    
T  15871239 actccgttttcgaccctaaactcgccaaactcgaccctaatcttcactccatgactaccctatcattgaaacactaatt-cttgttaacctacctgatta 15871141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 179 - 225
Target Start/End: Original strand, 12230754 - 12230800
Alignment:
Q  179 ttcgattcaaaaacataaattagttttcctcaattctcatctttcaa 225  Q
    ||| ||||||||||||||| | |||||||||||||||||||||||||    
T  12230754 ttcaattcaaaaacataaactggttttcctcaattctcatctttcaa 12230800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 194 - 356
Target Start/End: Original strand, 17419428 - 17419594
Alignment:
Q  194 taaattagttttcctcaattctcatctttcaacttcatcnnnnnnnn-cgttcatcataaatctctcatcaaaatctcacatattaacaacaacatcata 292  Q
    |||| ||||||||||||||||||||||||||||||||||         |||||||||| | |||||||||||||| ||||||  ||| |  |||| |||     
T  17419428 taaactagttttcctcaattctcatctttcaacttcatcttttcaattcgttcatcatcattctctcatcaaaat-tcacatcataatagtaacaacatt 17419526  T
Q  293 ttaagaattaaaagacc----ccgtcatatattaagataccctaaagtgcaaagatttttcccattac 356  Q
    |||| | |||||| |      || ||||| ||||||||||||||||||||||||||| ||||| ||||    
T  17419527 ttaaaatttaaaacaaatcttccttcatagattaagataccctaaagtgcaaagattcttccccttac 17419594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 194 - 232
Target Start/End: Complemental strand, 19727699 - 19727661
Alignment:
Q  194 taaattagttttcctcaattctcatctttcaacttcatc 232  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  19727699 taaactagttttcctcaattctcatctttcaacttcatc 19727661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 313 - 366
Target Start/End: Complemental strand, 15870990 - 15870937
Alignment:
Q  313 tcatatattaagataccctaaagtgcaaagatttttcccattacctcgaattct 366  Q
    ||||| ||||||||||||||||||||||||||| | ||| |||||| |||||||    
T  15870990 tcataaattaagataccctaaagtgcaaagattctcccccttaccttgaattct 15870937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 150
Target Start/End: Complemental strand, 13559607 - 13559555
Alignment:
Q  98 ccatgattaccctatcattcaaacattaattatttgttaacctaccagattat 150  Q
    ||||||||||||||||||||||| |  |||||||  |||||||||||||||||    
T  13559607 ccatgattaccctatcattcaaataccaattattcattaacctaccagattat 13559555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 313 - 361
Target Start/End: Complemental strand, 18554764 - 18554716
Alignment:
Q  313 tcatatattaagataccctaaagtgcaaagatttttcccattacctcga 361  Q
    ||||| ||||||||||||||||||||||||||| | ||| |||||||||    
T  18554764 tcatagattaagataccctaaagtgcaaagattctcccccttacctcga 18554716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 309 - 345
Target Start/End: Complemental strand, 19727580 - 19727544
Alignment:
Q  309 cccgtcatatattaagataccctaaagtgcaaagatt 345  Q
    ||||||||| |||||||||||||||||||||||||||    
T  19727580 cccgtcatagattaagataccctaaagtgcaaagatt 19727544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 277 - 363
Target Start/End: Complemental strand, 30275256 - 30275169
Alignment:
Q  277 taacaacaacatcatattaagaattaaa-agaccccgtcatatattaagataccctaaagtgcaaagatttttcccattacctcgaat 363  Q
    ||||||||||||||| |||||||||||| |  |||||||||| | |||| |||||||||||| || |||| | ||  |||||||||||    
T  30275256 taacaacaacatcatcttaagaattaaacaacccccgtcatagaataagttaccctaaagtgaaatgattctcccacttacctcgaat 30275169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 85 - 143
Target Start/End: Original strand, 13235092 - 13235150
Alignment:
Q  85 cctaatctttatcccatgattaccctatcattcaaacattaattatttgttaacctacc 143  Q
    ||||||||| |  |||||| |||||||||||||| ||| |||||||| |||||||||||    
T  13235092 cctaatcttcactccatgactaccctatcattcatacactaattattcgttaacctacc 13235150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 187 - 224
Target Start/End: Complemental strand, 13559525 - 13559488
Alignment:
Q  187 aaaaacataaattagttttcctcaattctcatctttca 224  Q
    |||||| |||| ||||||||||||||||||||||||||    
T  13559525 aaaaacttaaactagttttcctcaattctcatctttca 13559488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 69 - 138
Target Start/End: Original strand, 16588315 - 16588384
Alignment:
Q  69 actctccaaaatcggccctaatctttatcccatgattaccctatcattcaaacattaattatttgttaac 138  Q
    |||| ||||| ||| |||||| ||| | |||||||||||| || |||||||||| ||||||||| |||||    
T  16588315 actcaccaaactcgaccctaaacttcaccccatgattaccataccattcaaacactaattatttattaac 16588384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 101 - 142
Target Start/End: Original strand, 17419340 - 17419381
Alignment:
Q  101 tgattaccctatcattcaaacattaattatttgttaacctac 142  Q
    |||||| ||||||||||||||| |||| ||||||||||||||    
T  17419340 tgattaacctatcattcaaacactaatcatttgttaacctac 17419381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 91; Significance: 6e-44; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 187 - 424
Target Start/End: Original strand, 17451348 - 17451586
Alignment:
Q  187 aaaaacataaattagttttcctcaattctcatctttcaacttcatcnnnnnnnncgttcatcataaatctctcatcaaaatctcacatattaacaacaac 286  Q
    |||||| |||| ||| ||||||||||||||||||||||||||||||        | ||||||||||||||||||||| ||||||||||  ||| | ||||    
T  17451348 aaaaacctaaactagctttcctcaattctcatctttcaacttcatcttttaattctttcatcataaatctctcatcacaatctcacatcataagagcaac 17451447  T
Q  287 atcatattaagaattaaaagacc-ccgtcatatattaagataccctaaagtgcaaagatttttcccattacctcgaattctccaaaaatgcggtgtttgg 385  Q
    ||||| |||||||||||    || || ||||||||||||||||||||||||||||||||| |  || || ||||||||  ||  ||||||||  ||||||    
T  17451448 atcatcttaagaattaattaccctccatcatatattaagataccctaaagtgcaaagattctatcccttccctcgaatattctgaaaatgcgacgtttgg 17451547  T
Q  386 ctctcttcttcttagctagggtttccttctctcctctct 424  Q
    |||| |||| ||||||||||||||||| |||||||||||    
T  17451548 ctcttttctccttagctagggtttcctcctctcctctct 17451586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 35 - 150
Target Start/End: Original strand, 15544091 - 15544206
Alignment:
Q  35 ggggaaccctttttgactccgttttcgatcatatactctccaaaatcggccctaatctttatcccatgattaccctatcattcaaacattaattatttgt 134  Q
    ||||||||||||| ||||||||||| |||||||||||||||||| |||||| ||||||| | |||||||||||||||||| ||||||| ||||| |||||    
T  15544091 ggggaacccttttcgactccgttttagatcatatactctccaaactcggccataatcttcaccccatgattaccctatcaatcaaacactaattctttgt 15544190  T
Q  135 taacctaccagattat 150  Q
    ||||||||||||||||    
T  15544191 taacctaccagattat 15544206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 353 - 417
Target Start/End: Original strand, 31344279 - 31344343
Alignment:
Q  353 ttacctcgaattctccaaaaatgcggtgtttggctctcttcttcttagctagggtttccttctct 417  Q
    ||||||| |||||||| ||||||||| | ||| ||||||||| ||||||||||||||||||||||    
T  31344279 ttacctcaaattctccgaaaatgcggagcttgactctcttctccttagctagggtttccttctct 31344343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 100 - 150
Target Start/End: Original strand, 17451265 - 17451315
Alignment:
Q  100 atgattaccctatcattcaaacattaattatttgttaacctaccagattat 150  Q
    ||||||||||||||||||||||| ||| | || ||||||||||||||||||    
T  17451265 atgattaccctatcattcaaacactaactcttagttaacctaccagattat 17451315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 277 - 333
Target Start/End: Original strand, 15544314 - 15544372
Alignment:
Q  277 taacaacaacatcatattaagaattaa--aagaccccgtcatatattaagataccctaa 333  Q
    ||||||||||||||| |||||||||||  ||  |||||| |||||||||||||||||||    
T  15544314 taacaacaacatcatcttaagaattaaacaaccccccgttatatattaagataccctaa 15544372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 361
Target Start/End: Original strand, 21496633 - 21496680
Alignment:
Q  314 catatattaagataccctaaagtgcaaagatttttcccattacctcga 361  Q
    |||| ||||||||||||||||||||||||||| | ||| |||||||||    
T  21496633 catagattaagataccctaaagtgcaaagattctcccccttacctcga 21496680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 327 - 371
Target Start/End: Original strand, 15545327 - 15545371
Alignment:
Q  327 accctaaagtgcaaagatttttcccattacctcgaattctccaaa 371  Q
    ||||||||||||||||||| | ||| |||||||||||||| ||||    
T  15545327 accctaaagtgcaaagattctaccccttacctcgaattcttcaaa 15545371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0381 (Bit Score: 86; Significance: 6e-41; HSPs: 2)
Name: scaffold0381
Description:

Target: scaffold0381; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 38 - 368
Target Start/End: Complemental strand, 11818 - 11499
Alignment:
Q  38 gaaccctttttgactccgttttcgatcatatactctccaaaatcggccctaatctttatcccatgattaccctatcattcaaacattaattatttgttaa 137  Q
    |||||||||||||| |||||||||||| |||| |||||||| |||||| ||||||| | | |||||||| | |||| || ||||| ||||| ||||||||    
T  11818 gaaccctttttgacaccgttttcgatcctatattctccaaactcggccgtaatcttcacctcatgattatcttatcgttgaaacactaattctttgttaa 11719  T
Q  138 cctaccagattatatactcatcttaagtctgnnnnnnnnncttcgattcaaaaacataaattagttttcctcaattctcatctttcaacttcatcnnnnn 237  Q
    | |||| ||||||  |||||| ||||| ||            || ||||||||||||||| |||||||| ||||||||||||||||| || ||||         
T  11718 cttaccggattatccactcattttaaggctaaaaaaac----tcaattcaaaaacataaactagttttcttcaattctcatctttcatctgcatctttta 11623  T
Q  238 nnncgttcatcataaatctctcatcaaaatctcacatattaacaacaacatcatattaagaattaaaagaccccgtcatatattaagataccctaaagtg 337  Q
       |||| |||||||||||||||||| ||||||||||  ||||| ||||      ||||||| ||||   ||||||||||||||||||||||||||||||    
T  11622 attcgtttatcataaatctctcatcacaatctcacatcataacatcaac------ttaagaaataaacacccccgtcatatattaagataccctaaagtg 11529  T
Q  338 caaagatttttcccattacctcgaattctcc 368  Q
    |||||| || |||| ||| ||||||||||||    
T  11528 caaaga-ttctccccttaactcgaattctcc 11499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0381; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 368 - 424
Target Start/End: Original strand, 12668 - 12724
Alignment:
Q  368 caaaaatgcggtgtttggctctcttcttcttagctagggtttccttctctcctctct 424  Q
    ||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||    
T  12668 caaaaatgcggtgtttggctctcttctccttagctagggtttcctcctctcttctct 12724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 85; Significance: 2e-40; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 37 - 367
Target Start/End: Complemental strand, 22497508 - 22497189
Alignment:
Q  37 ggaaccctttttgactccgttttcgatcatatactctccaaaatcggccctaatctttatcccatgattaccctatcattcaaacattaattatttgtta 136  Q
    ||||||||||||||||| ||||| |||| ||||||||||||||||| |||||||||| | ||| |||||||||||| ||||||||| ||||| || || |    
T  22497508 ggaaccctttttgactctgtttttgatcctatactctccaaaatcgaccctaatcttcaccccgtgattaccctattattcaaacactaattcttcgtca 22497409  T
Q  137 acctaccagattatatactcatcttaagtctgnnnnnnnnncttcgattcaaaaacataaattagttttcctcaattctcatctttcaacttcatcnnnn 236  Q
    |||||||| |||||  |||| | ||||| ||            || |||||||||| ||||||| |||||||||||||   |||||||||||||||        
T  22497408 acctaccatattatccactccttttaaggctaaaaaaac----tcaattcaaaaacctaaattaattttcctcaattc---tctttcaacttcatctttt 22497316  T
Q  237 nnnncgttcatcataaatctctcatcaaaatctcacatattaacaacaacatcatattaagaattaaaagaccccgtcatatattaagataccctaaagt 336  Q
        |||||||||||||||| |||||| |||||||||   | | ||||||||||| ||||||| ||||    ||||||||||| ||||||||||| ||||    
T  22497315 aattcgttcatcataaatctttcatcacaatctcaca---ttataacaacatcatcttaagaaataaacacacccgtcatataataagataccct-aagt 22497220  T
Q  337 gcaaagatttttcccattacctcgaattctc 367  Q
    ||||||||| | ||| ||| |||||||||||    
T  22497219 gcaaagattctcccccttagctcgaattctc 22497189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 203 - 423
Target Start/End: Complemental strand, 29718253 - 29718030
Alignment:
Q  203 tttcctcaattctcatctttcaacttcatcnnnnnnnncgttcatcataaatctctcatcaaaatctcacatattaacaacaacatcatattaagaatta 302  Q
    |||||| |||||||||||||||||||||||        | |||||||| | |||||||||||||| ||||||  ||||||||||| |||||||| | |||    
T  29718253 tttccttaattctcatctttcaacttcatcttttaattcattcatcatcattctctcatcaaaat-tcacatcataacaacaacaacatattaaaattta 29718155  T
Q  303 aaagaccccgtc----atatattaagataccctaaagtgcaaagatttttcccattacctcgaattctccaaaaatgcggtgtttggctctcttcttctt 398  Q
    | | | ||| ||    ||| |||||||||| |||||||||||| ||| | ||| |||||||||||| ||| |||| |||| |  | ||||||||||  ||    
T  29718154 agacaacccttccatcatagattaagatactctaaagtgcaaatattctcccccttacctcgaattatccgaaaacgcggcgcatagctctcttctcttt 29718055  T
Q  399 agctagggtttccttctctcctctc 423  Q
    | |||||||||||| ||||||||||    
T  29718054 aactagggtttcctcctctcctctc 29718030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 50 - 148
Target Start/End: Complemental strand, 18985517 - 18985419
Alignment:
Q  50 actccgttttcgatcatatactctccaaaatcggccctaatctttatcccatgattaccctatcattcaaacattaattatttgttaacctaccagatt 148  Q
    ||||||||||||| | || |||| ||||| ||| |||||||||  |  |||| || | ||||||||||||||| ||||| || ||||||||||||||||    
T  18985517 actccgttttcgaccctaaactcgccaaattcgaccctaatctgcactccatcatcaacctatcattcaaacactaattcttcgttaacctaccagatt 18985419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 183 - 226
Target Start/End: Complemental strand, 18985391 - 18985348
Alignment:
Q  183 attcaaaaacataaattagttttcctcaattctcatctttcaac 226  Q
    |||| ||||| |||||||||||||||| ||||||||||||||||    
T  18985391 attcgaaaacctaaattagttttcctctattctcatctttcaac 18985348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 319 - 363
Target Start/End: Complemental strand, 26861249 - 26861205
Alignment:
Q  319 attaagataccctaaagtgcaaagatttttcccattacctcgaat 363  Q
    ||||||||||||||||||||||||| | | ||| |||||||||||    
T  26861249 attaagataccctaaagtgcaaagaatctcccccttacctcgaat 26861205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 43 - 131
Target Start/End: Original strand, 27473217 - 27473305
Alignment:
Q  43 ctttttgactccgttttcgatcatatactctccaaaatcggccctaatctttatcccatgattaccctatcattcaaacattaattatt 131  Q
    ||||| ||||||||||||||||  ||||||||||||   | |||||||| ||| || ||||  |||||||||||  |||| ||||||||    
T  27473217 cttttcgactccgttttcgatccaatactctccaaacatgaccctaatcattaccctatgaccaccctatcattataacactaattatt 27473305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 43 - 131
Target Start/End: Complemental strand, 34858483 - 34858395
Alignment:
Q  43 ctttttgactccgttttcgatcatatactctccaaaatcggccctaatctttatcccatgattaccctatcattcaaacattaattatt 131  Q
    ||||| |||||||||||||||   ||||||||||||   | |||||||| ||| || ||||| |||||||||||  |||| ||||||||    
T  34858483 cttttcgactccgttttcgatacaatactctccaaacatgaccctaatcattaccctatgatcaccctatcattataacactaattatt 34858395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 43 - 131
Target Start/End: Complemental strand, 34873545 - 34873457
Alignment:
Q  43 ctttttgactccgttttcgatcatatactctccaaaatcggccctaatctttatcccatgattaccctatcattcaaacattaattatt 131  Q
    ||||| |||||||||||||||   ||||||||||||   | |||||||| ||| || ||||| |||||||||||  |||| ||||||||    
T  34873545 cttttcgactccgttttcgatacaatactctccaaacatgaccctaatcattaccctatgatcaccctatcattataacactaattatt 34873457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0364 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: scaffold0364
Description:

Target: scaffold0364; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 16 - 141
Target Start/End: Original strand, 14347 - 14472
Alignment:
Q  16 tctgctgcgatttaacttcggggaaccctttttgactccgttttcgatcatatactctccaaaatcggccctaatctttatcccatgattaccctatcat 115  Q
    ||||||||||||| ||||   ||||||||||| |||| |||||| |||||||||||||||||| ||  |||| ||||| | ||||||||||| |||||||    
T  14347 tctgctgcgatttcactttaaggaacccttttcgacttcgtttttgatcatatactctccaaactcaacccttatcttcaccccatgattacactatcat 14446  T
Q  116 tcaaacattaattatttgttaaccta 141  Q
    ||||||| ||||| ||||| ||||||    
T  14447 tcaaacactaattctttgtaaaccta 14472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0364; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 313 - 361
Target Start/End: Original strand, 14633 - 14681
Alignment:
Q  313 tcatatattaagataccctaaagtgcaaagatttttcccattacctcga 361  Q
    ||||| ||||||||||||||||||||||||||| | ||| |||||||||    
T  14633 tcatagattaagataccctaaagtgcaaagattctcccccttacctcga 14681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0385 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 183 - 367
Target Start/End: Original strand, 16082 - 16269
Alignment:
Q  183 attcaaaaacataaattagttttcctcaattctcatctttcaacttcatcnnnnnnnncgttcatcataaatctctcatcaaaatctcacatattaacaa 282  Q
    |||||||||| |||| ||||||||||||||| ||||||||||| ||||||        |||||||||| | || ||||||||||| ||||||  ||| |     
T  16082 attcaaaaacttaaactagttttcctcaattgtcatctttcaatttcatctttcaattcgttcatcatcattcactcatcaaaat-tcacatcataaaag 16180  T
Q  283 caacatcatattaagaattaaaa-gaccc---cgtcatatattaagataccctaaagtgcaaagatttttcccattacctcgaattctc 367  Q
    |||||   |||||| | |||| | |||||   | ||||| |||||||||||||||||| |||||||| | ||| |||||||||||||||    
T  16181 caacaatgtattaaaatttaagacgaccctcccatcataaattaagataccctaaagtacaaagattctcccccttacctcgaattctc 16269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0290 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: scaffold0290
Description:

Target: scaffold0290; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 183 - 296
Target Start/End: Complemental strand, 12011 - 11899
Alignment:
Q  183 attcaaaaacataaattagttttcctcaattctcatctttcaacttcatcnnnnnnnncgttcatcataaatctctcatcaaaatctcacatattaacaa 282  Q
    |||||||||| |||| |||||||||||| |||||||| ||||||||||||        |||||||||||||| |||||||||||| | ||||  |||||     
T  12011 attcaaaaacctaaactagttttcctcatttctcatcattcaacttcatcttttaattcgttcatcataaatttctcatcaaaat-ttacatcataacag 11913  T
Q  283 caacatcatattaa 296  Q
    ||||| ||||||||    
T  11912 caacaacatattaa 11899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0290; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 50 - 150
Target Start/End: Complemental strand, 12137 - 12037
Alignment:
Q  50 actccgttttcgatcatatactctccaaaatcggccctaatctttatcccatgattaccctatcattcaaacattaattatttgttaacctaccagatta 149  Q
    ||||| ||||||| | || |||| ||||| ||| |||||||||  |  |||| || | ||||| ||||||||| ||||| || |||||||||||||||||    
T  12137 actccattttcgaccctaaactcgccaaactcgaccctaatctgcactccatcatcaacctataattcaaacactaattcttcgttaacctaccagatta 12038  T
Q  150 t 150  Q
    |    
T  12037 t 12037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 69 - 150
Target Start/End: Complemental strand, 22395723 - 22395642
Alignment:
Q  69 actctccaaaatcggccctaatctttatcccatgattaccctatcattcaaacattaattatttgttaacctaccagattat 150  Q
    ||||| |||| ||| |||||||||| | ||| |||||| ||||||||||||||| |||| ||||||||||||||| ||||||    
T  22395723 actcttcaaactcgaccctaatcttcaccccgtgattaacctatcattcaaacactaatcatttgttaacctaccggattat 22395642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 50 - 150
Target Start/End: Complemental strand, 19545430 - 19545330
Alignment:
Q  50 actccgttttcgatcatatactctccaaaatcggccctaatctttatcccatgattaccctatcattcaaacattaattatttgttaacctaccagatta 149  Q
    ||||||||||||| | || |||| |||||  || |||||||||| |  |||| || ||||||||||||||||| ||||| || |||||||||||||||||    
T  19545430 actccgttttcgaccctaaactcgccaaacccgaccctaatcttcactccatcatcaccctatcattcaaacactaattcttcgttaacctaccagatta 19545331  T
Q  150 t 150  Q
    |    
T  19545330 t 19545330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 50 - 131
Target Start/End: Complemental strand, 20733528 - 20733447
Alignment:
Q  50 actccgttttcgatcatatactctccaaaatcggccctaatctttatcccatgattaccctatcattcaaacattaattatt 131  Q
    |||||||||||||||  ||||||||||||   | |||||||| |||||| ||||||||| |||||||  |||| ||||||||    
T  20733528 actccgttttcgatccaatactctccaaacatgaccctaatcattatcctatgattaccttatcattataacactaattatt 20733447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 313 - 361
Target Start/End: Complemental strand, 19545188 - 19545140
Alignment:
Q  313 tcatatattaagataccctaaagtgcaaagatttttcccattacctcga 361  Q
    ||||| ||||||||||||||||||||||||||| | ||| |||||||||    
T  19545188 tcatagattaagataccctaaagtgcaaagattctcccccttacctcga 19545140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 308 - 364
Target Start/End: Original strand, 26587842 - 26587898
Alignment:
Q  308 ccccgtcatatattaagataccctaaagtgcaaagatttttcccattacctcgaatt 364  Q
    |||| ||||| ||||||||||||||||||| ||||||| | ||| ||||||||||||    
T  26587842 ccccatcatagattaagataccctaaagtgaaaagattctcccctttacctcgaatt 26587898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 131
Target Start/End: Original strand, 27851967 - 27852055
Alignment:
Q  43 ctttttgactccgttttcgatcatatactctccaaaatcggccctaatctttatcccatgattaccctatcattcaaacattaattatt 131  Q
    ||||| ||||||||||||||||  ||||||||||||   | |||||||| ||| || ||||| |||||||||||  |||| ||||||||    
T  27851967 cttttcgactccgttttcgatccaatactctccaaacatgaccctaatcattaccctatgatcaccctatcattataacactaattatt 27852055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 313 - 343
Target Start/End: Complemental strand, 22395502 - 22395472
Alignment:
Q  313 tcatatattaagataccctaaagtgcaaaga 343  Q
    |||||||||||||||||||||||||||||||    
T  22395502 tcatatattaagataccctaaagtgcaaaga 22395472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 143
Target Start/End: Original strand, 14746370 - 14746459
Alignment:
Q  54 cgttttcgatcatatactctccaaaatcggccctaatctttatcccatgattaccctatcattcaaacattaattatttgttaacctacc 143  Q
    ||||||||||| || |||| ||||| ||  |||||||||| |  | | ||||| ||||||||| ||||| |||| |||||||||||||||    
T  14746370 cgttttcgatcctaaactcgccaaactcaaccctaatcttcactctacgattaacctatcattaaaacactaatcatttgttaacctacc 14746459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0207 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: scaffold0207
Description:

Target: scaffold0207; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 183 - 271
Target Start/End: Complemental strand, 914 - 826
Alignment:
Q  183 attcaaaaacataaattagttttcctcaattctcatctttcaacttcatcnnnnnnnncgttcatcataaatctctcatcaaaatctca 271  Q
    ||||||||||  |||| |||||||||||||||||||||||||||||| ||        ||||||||||||||||||| ||| |||||||    
T  914 attcaaaaaccaaaataagttttcctcaattctcatctttcaacttcgtctttgaattcgttcatcataaatctctcgtcataatctca 826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0207; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 16 - 141
Target Start/End: Complemental strand, 1076 - 952
Alignment:
Q  16 tctgctgcgatttaacttcggggaaccctttttgactccgttttcgatcatatactctccaaaatcggccctaatctttatcccatgattaccctatcat 115  Q
    ||||||||||||| |||| | | | ||||||| |||||| ||||  ||| |||||||||||||  || |||||||||| | | ||||||||| ||||||     
T  1076 tctgctgcgatttcactttgtg-agcccttttcgactccattttttatcgtatactctccaaacacgaccctaatcttcacctcatgattacactatcaa 978  T
Q  116 tcaaacattaattatttgttaaccta 141  Q
    | ||||| ||| | ||||||||||||    
T  977 taaaacactaactctttgttaaccta 952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 353 - 424
Target Start/End: Complemental strand, 27172791 - 27172715
Alignment:
Q  353 ttacctcgaattctccaaaaatgcggtgtttggct-----ctcttcttcttagctagggtttccttctctcctctct 424  Q
    ||||||| |||||||||||||  ||||||||||||     ||||||||||||||||||||||||| |||||||||||    
T  27172791 ttacctcaaattctccaaaaacacggtgtttggcttggctctcttcttcttagctagggtttcctcctctcctctct 27172715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 313 - 361
Target Start/End: Complemental strand, 10454115 - 10454067
Alignment:
Q  313 tcatatattaagataccctaaagtgcaaagatttttcccattacctcga 361  Q
    ||||| |||||||||||||||||| |||||||| ||||| |||||||||    
T  10454115 tcatagattaagataccctaaagttcaaagattcttccccttacctcga 10454067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 199 - 232
Target Start/End: Original strand, 15727707 - 15727740
Alignment:
Q  199 tagttttcctcaattctcatctttcaacttcatc 232  Q
    ||||||||||||||||| ||||||||||||||||    
T  15727707 tagttttcctcaattcttatctttcaacttcatc 15727740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 199 - 232
Target Start/End: Complemental strand, 17861491 - 17861458
Alignment:
Q  199 tagttttcctcaattctcatctttcaacttcatc 232  Q
    ||||||||||||||||||||||||| ||||||||    
T  17861491 tagttttcctcaattctcatctttccacttcatc 17861458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 50 - 150
Target Start/End: Complemental strand, 11800265 - 11800165
Alignment:
Q  50 actccgttttcgatcatatactctccaaaatcggccctaatctttatcccatgattaccctatcattcaaacattaattatttgttaacctaccagatta 149  Q
    ||||||||||||| | || |||| ||||| ||  |||||||||| |  ||||||||||||||||||| ||||| ||||| ||  ||||||||||||||||    
T  11800265 actccgttttcgaccctaaactcgccaaactcaaccctaatcttcactccatgattaccctatcattgaaacactaattcttctttaacctaccagatta 11800166  T
Q  150 t 150  Q
    |    
T  11800165 t 11800165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 194 - 232
Target Start/End: Complemental strand, 16068224 - 16068186
Alignment:
Q  194 taaattagttttcctcaattctcatctttcaacttcatc 232  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  16068224 taaactagttttcctcaattctcatctttcaacttcatc 16068186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 150
Target Start/End: Complemental strand, 9693230 - 9693178
Alignment:
Q  98 ccatgattaccctatcattcaaacattaattatttgttaacctaccagattat 150  Q
    ||||||||||||||||||||||| |  |||||||  |||||||||||||||||    
T  9693230 ccatgattaccctatcattcaaataccaattattcattaacctaccagattat 9693178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 183 - 225
Target Start/End: Complemental strand, 16379189 - 16379147
Alignment:
Q  183 attcaaaaacataaattagttttcctcaattctcatctttcaa 225  Q
    |||||||||| |||| ||||||||||||||||||| |||||||    
T  16379189 attcaaaaacctaaactagttttcctcaattctcaactttcaa 16379147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 187 - 224
Target Start/End: Complemental strand, 9693148 - 9693111
Alignment:
Q  187 aaaaacataaattagttttcctcaattctcatctttca 224  Q
    |||||| |||| ||||||||||||||||||||||||||    
T  9693148 aaaaacttaaactagttttcctcaattctcatctttca 9693111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 131
Target Start/End: Original strand, 11091415 - 11091496
Alignment:
Q  50 actccgttttcgatcatatactctccaaaatcggccctaatctttatcccatgattaccctatcattcaaacattaattatt 131  Q
    ||||| |||||||||  ||||||||||||   | |||||||| ||| || |||||||||||||||||  |||| ||||||||    
T  11091415 actccattttcgatccaatactctccaaacatgaccctaatcattaccctatgattaccctatcattataacactaattatt 11091496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 43 - 131
Target Start/End: Complemental strand, 46580012 - 46579924
Alignment:
Q  43 ctttttgactccgttttcgatcatatactctccaaaatcggccctaatctttatcccatgattaccctatcattcaaacattaattatt 131  Q
    ||||| ||||||||||||||||  ||||||||||||   | |||||||  ||| || ||||| |||||||||||  |||| ||||||||    
T  46580012 cttttcgactccgttttcgatccaatactctccaaacatgaccctaataattaccctatgatcaccctatcattataacactaattatt 46579924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 98 - 150
Target Start/End: Original strand, 10302602 - 10302654
Alignment:
Q  98 ccatgattaccctatcattcaaacattaattatttgttaacctaccagattat 150  Q
    ||||||||||||||||||||||||| ||||| || ||||||||||||||||||    
T  10302602 ccatgattaccctatcattcaaacactaattcttcgttaacctaccagattat 10302654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 56 - 149
Target Start/End: Original strand, 19186613 - 19186706
Alignment:
Q  56 ttttcgatcatatactctccaaaatcggccctaatctttatcccatgattaccctatcattcaaacattaattatttgttaacctaccagatta 149  Q
    ||||||| | || |||| ||||| ||| || ||||||| |  |||||| |||||||||||||||||| ||||| |||||||||||||| |||||    
T  19186613 ttttcgaccctaaactcgccaaactcgaccgtaatcttcactccatgactaccctatcattcaaacactaattctttgttaacctacctgatta 19186706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 50 - 150
Target Start/End: Original strand, 22161555 - 22161655
Alignment:
Q  50 actccgttttcgatcatatactctccaaaatcggccctaatctttatcccatgattaccctatcattcaaacattaattatttgttaacctaccagatta 149  Q
    ||||||||||||| | || |||| ||||| ||| |||||||  |||  |||||| |||||||||||||||||| ||||| ||  |||||||||| |||||    
T  22161555 actccgttttcgaccctaaactcgccaaactcgaccctaatagttactccatgactaccctatcattcaaacactaattcttcattaacctacctgatta 22161654  T
Q  150 t 150  Q
    |    
T  22161655 t 22161655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 51 - 150
Target Start/End: Complemental strand, 16358111 - 16358012
Alignment:
Q  51 ctccgttttcgatcatatactctccaaaatcggccctaatctttatcccatgattaccctatcattcaaacattaattatttgttaacctaccagattat 150  Q
    |||||||||||| | || |||| ||||| ||| |||||||||| |  |||||| |||||||||||| ||||| ||||| || | ||||||||| ||||||    
T  16358111 ctccgttttcgaccctaaactcgccaaattcgaccctaatcttcactccatgactaccctatcattgaaacactaattcttcgctaacctacctgattat 16358012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 183 - 225
Target Start/End: Original strand, 10341006 - 10341048
Alignment:
Q  183 attcaaaaacataaattagttttcctcaattctcatctttcaa 225  Q
    |||||||||| |||| |||||||||||||||||||||||||||    
T  10341006 attcaaaaacttaaactagttttcctcaattctcatctttcaa 10341048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 313 - 367
Target Start/End: Complemental strand, 16357863 - 16357810
Alignment:
Q  313 tcatatattaagataccctaaagtgcaaagatttttcccattacctcgaattctc 367  Q
    ||||| ||||||||||||||||||||||||| || |||| |||||||||||||||    
T  16357863 tcataaattaagataccctaaagtgcaaaga-ttctccccttacctcgaattctc 16357810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 313 - 367
Target Start/End: Original strand, 21977175 - 21977229
Alignment:
Q  313 tcatatattaagataccctaaagtgcaaagatttttcccattacctcgaattctc 367  Q
    ||||| ||||||||||||||||||||||||||| | ||| |||||| ||||||||    
T  21977175 tcataaattaagataccctaaagtgcaaagattctaccccttaccttgaattctc 21977229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 313 - 367
Target Start/End: Original strand, 21999606 - 21999660
Alignment:
Q  313 tcatatattaagataccctaaagtgcaaagatttttcccattacctcgaattctc 367  Q
    ||||| ||||||||||||||||||||||||||| | ||| |||||| ||||||||    
T  21999606 tcataaattaagataccctaaagtgcaaagattctaccccttaccttgaattctc 21999660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 313 - 367
Target Start/End: Original strand, 22161801 - 22161855
Alignment:
Q  313 tcatatattaagataccctaaagtgcaaagatttttcccattacctcgaattctc 367  Q
    ||||| ||||||||||||||||||||||||||| | ||| |||||| ||||||||    
T  22161801 tcataaattaagataccctaaagtgcaaagattctaccccttaccttgaattctc 22161855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 183 - 232
Target Start/End: Complemental strand, 27868437 - 27868388
Alignment:
Q  183 attcaaaaacataaattagttttcctcaattctcatctttcaacttcatc 232  Q
    |||| ||||| |||||| |||||||||||||||||||||| |||||||||    
T  27868437 attcgaaaacctaaatttgttttcctcaattctcatcttttaacttcatc 27868388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 150
Target Start/End: Original strand, 21976929 - 21977029
Alignment:
Q  50 actccgttttcgatcatatactctccaaaatcggccctaatctttatcccatgattaccctatcattcaaacattaattatttgttaacctaccagatta 149  Q
    ||||||||||| | | || |||| ||||| ||| ||||||| ||||  |||||| |||||| ||||||||||| ||||| ||  |||||||||| |||||    
T  21976929 actccgttttcaaccctaaactcgccaaactcgaccctaatatttactccatgactaccctgtcattcaaacactaattcttcattaacctacctgatta 21977028  T
Q  150 t 150  Q
    |    
T  21977029 t 21977029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 150
Target Start/End: Original strand, 21999360 - 21999460
Alignment:
Q  50 actccgttttcgatcatatactctccaaaatcggccctaatctttatcccatgattaccctatcattcaaacattaattatttgttaacctaccagatta 149  Q
    ||||||||||| | | || |||| ||||| ||| ||||||| ||||  |||||| |||||| ||||||||||| ||||| ||  |||||||||| |||||    
T  21999360 actccgttttcaaccctaaactcgccaaactcgaccctaatatttactccatgactaccctgtcattcaaacactaattcttcattaacctacctgatta 21999459  T
Q  150 t 150  Q
    |    
T  21999460 t 21999460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 313 - 363
Target Start/End: Original strand, 19186852 - 19186902
Alignment:
Q  313 tcatatattaagataccctaaagtgcaaagatttttcccattacctcgaat 363  Q
    ||||| ||||||||||||||||||||||||||| | | | |||||||||||    
T  19186852 tcataaattaagataccctaaagtgcaaagattctcctccttacctcgaat 19186902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 52 - 150
Target Start/End: Complemental strand, 27868561 - 27868463
Alignment:
Q  52 tccgttttcgatcatatactctccaaaatcggccctaatctttatcccatgattaccctatcattcaaacattaattatttgttaacctaccagattat 150  Q
    ||||||||||| | || |||| ||||| ||  ||||||| || |  |||| || | |||||||||||||||| |||| || ||||||||||||||||||    
T  27868561 tccgttttcgaccctaaactcgccaaactcaaccctaatattcactccataatcaacctatcattcaaacatcaattcttcgttaacctaccagattat 27868463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 313 - 345
Target Start/End: Original strand, 10302789 - 10302821
Alignment:
Q  313 tcatatattaagataccctaaagtgcaaagatt 345  Q
    ||||| |||||||||||||||||||||||||||    
T  10302789 tcatagattaagataccctaaagtgcaaagatt 10302821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 98 - 150
Target Start/End: Original strand, 10340928 - 10340980
Alignment:
Q  98 ccatgattaccctatcattcaaacattaattatttgttaacctaccagattat 150  Q
    |||| |||| ||||||||||||||| ||||| || ||||||||||| ||||||    
T  10340928 ccataattaacctatcattcaaacactaattcttcgttaacctaccggattat 10340980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 43 - 131
Target Start/End: Complemental strand, 52989149 - 52989061
Alignment:
Q  43 ctttttgactccgttttcgatcatatactctccaaaatcggccctaatctttatcccatgattaccctatcattcaaacattaattatt 131  Q
    ||||| ||||| ||||||||||  ||||||||||||   | |||||||| |||||  ||||| |||||||||||  |||| ||||||||    
T  52989149 cttttcgactctgttttcgatccaatactctccaaacatgaccctaatcattatcatatgatcaccctatcattataacactaattatt 52989061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 50 - 142
Target Start/End: Original strand, 11779 - 11871
Alignment:
Q  50 actccgttttcgatcatatactctccaaaatcggccctaatctttatcccatgattaccctatcattcaaacattaattatttgttaacctac 142  Q
    ||||||||||||| | || |||| ||||| ||| |||||||||| |  |||||| |||||||||||||||||| ||||| || || |||||||    
T  11779 actccgttttcgaccctaaactcaccaaactcgaccctaatcttcactccatgactaccctatcattcaaacactaattcttcgtgaacctac 11871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 194 - 232
Target Start/End: Original strand, 143050 - 143088
Alignment:
Q  194 taaattagttttcctcaattctcatctttcaacttcatc 232  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  143050 taaactagttttcctcaattctcatctttcaacttcatc 143088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0153 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0153
Description:

Target: scaffold0153; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 131
Target Start/End: Original strand, 12081 - 12169
Alignment:
Q  43 ctttttgactccgttttcgatcatatactctccaaaatcggccctaatctttatcccatgattaccctatcattcaaacattaattatt 131  Q
    ||||| ||||||||||||||||  ||||||||||||   | |||||||| ||| || ||||| |||||||||||  |||| ||||||||    
T  12081 cttttcgactccgttttcgatccaatactctccaaacatgaccctaatcattaccctatgatcaccctatcattataacactaattatt 12169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0153; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 43 - 131
Target Start/End: Original strand, 5061 - 5149
Alignment:
Q  43 ctttttgactccgttttcgatcatatactctccaaaatcggccctaatctttatcccatgattaccctatcattcaaacattaattatt 131  Q
    ||||| |||||| |||||||||  ||||||||||||   | |||||||| ||| || ||||| |||||||||||  |||| ||||||||    
T  5061 cttttcgactccattttcgatccaatactctccaaacatgaccctaatcattaccctatgatcaccctatcattataacactaattatt 5149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1043 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold1043
Description:

Target: scaffold1043; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 84 - 142
Target Start/End: Complemental strand, 781 - 723
Alignment:
Q  84 ccctaatctttatcccatgattaccctatcattcaaacattaattatttgttaacctac 142  Q
    |||||||||| |  ||||||||| | ||||||| |||||||||| ||||||||||||||    
T  781 ccctaatcttcactccatgattaacttatcattaaaacattaatcatttgttaacctac 723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0170 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0170
Description:

Target: scaffold0170; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 194 - 232
Target Start/End: Original strand, 18099 - 18137
Alignment:
Q  194 taaattagttttcctcaattctcatctttcaacttcatc 232  Q
    |||| |||||||||||||||||| |||||||||||||||    
T  18099 taaactagttttcctcaattctcgtctttcaacttcatc 18137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0408 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0408
Description:

Target: scaffold0408; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 143
Target Start/End: Original strand, 14806 - 14895
Alignment:
Q  54 cgttttcgatcatatactctccaaaatcggccctaatctttatcccatgattaccctatcattcaaacattaattatttgttaacctacc 143  Q
    ||||||||||| || |||| ||||| ||  |||||||||| |  | | ||||| ||||||||| ||||| |||| |||||||||||||||    
T  14806 cgttttcgatcctaaactcgccaaactcaaccctaatcttcactctacgattaacctatcattaaaacactaatcatttgttaacctacc 14895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0686 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0686
Description:

Target: scaffold0686; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 43 - 131
Target Start/End: Original strand, 1200 - 1288
Alignment:
Q  43 ctttttgactccgttttcgatcatatactctccaaaatcggccctaatctttatcccatgattaccctatcattcaaacattaattatt 131  Q
    ||||| |||||||||||||||   ||||||||||||   | |||||||| ||| || ||||| |||||||||||  |||| ||||||||    
T  1200 cttttcgactccgttttcgatacaatactctccaaacatgaccctaatcattaccctatgataaccctatcattataacactaattatt 1288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0174 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0174
Description:

Target: scaffold0174; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 43 - 131
Target Start/End: Original strand, 13398 - 13486
Alignment:
Q  43 ctttttgactccgttttcgatcatatactctccaaaatcggccctaatctttatcccatgattaccctatcattcaaacattaattatt 131  Q
    ||||| |||||| |||||||||  ||||||||||||   | |||||||| ||| || ||||| |||||||||||  |||| ||||||||    
T  13398 cttttcgactcctttttcgatccaatactctccaaacatgaccctaatcattaccctatgatcaccctatcattataacactaattatt 13486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 43 - 131
Target Start/End: Original strand, 68058 - 68146
Alignment:
Q  43 ctttttgactccgttttcgatcatatactctccaaaatcggccctaatctttatcccatgattaccctatcattcaaacattaattatt 131  Q
    ||||| ||||||||||||||||  ||||||||||||   | |||||||  ||| || ||||| |||||||||||  |||| ||||||||    
T  68058 cttttcgactccgttttcgatccaatactctccaaacatgaccctaattattaccctatgatcaccctatcattataacactaattatt 68146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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