View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5059_high_6 (Length: 308)
Name: NF5059_high_6
Description: NF5059
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5059_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 15 - 274
Target Start/End: Complemental strand, 28922628 - 28922370
Alignment:
| Q |
15 |
tctttcacattgtcatgctgtgatttgtcattgaattaagattctgtctacagtgacgacttagaagccaaacatactggctggtgttaataatggcatt |
114 |
Q |
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| T |
28922628 |
tctttcacattgtcatgctgtgatttgtcattgcattaagattctgtctacagtgacgacttagaagccaaacatactggctggtgttaataatggcatt |
28922529 |
T |
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| Q |
115 |
catgtgctgcttcttgcattcttccttttaatgttgtttgttttccatttctcaacgatgcactccgatatcacagtccaagttcaatataatatatcct |
214 |
Q |
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| T |
28922528 |
catgtgctgcttcttgcattcttccttttaatgttgtttgttttccatttctcagtgatgcactccgatatcacagtctgatttcaatataatatatcc- |
28922430 |
T |
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| Q |
215 |
tttaatattttattatgttcaagaggatcactttcacttatttataatctaattgtgata |
274 |
Q |
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| T |
28922429 |
tttaatattttattatgctcaagaggatcactttcacttatttataatctaattgtgata |
28922370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 18 - 259
Target Start/End: Complemental strand, 28913164 - 28912924
Alignment:
| Q |
18 |
ttcacattgtcatgctgtgatttgtcattgaattaagattctgtctacagtgacgacttagaagccaaacatactggctggtgttaataatggcattcat |
117 |
Q |
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| T |
28913164 |
ttcacattgtcatgctgtgatttgtcattgcattgagattctctttacagtgacgacttagaagccaaatatattggctggtgttaataaccccattgat |
28913065 |
T |
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| Q |
118 |
gtgctgcttcttgcattcttccttttaatgttgtttgttttccatttctcaacgatgcactccgatatcacagtccaagttcaatataatatatcctttt |
217 |
Q |
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| T |
28913064 |
gtgttgcttcttgctttcttccttttaatgttgttt-atttccatttcctaccgatgtactccgatatcacagtccgagttcaatataatatatccttta |
28912966 |
T |
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| Q |
218 |
aatattttattatgttcaagaggatcactttcacttatttat |
259 |
Q |
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| T |
28912965 |
atgtttttattattttcaagaggatcactttcacttatttat |
28912924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 64
Target Start/End: Complemental strand, 28888845 - 28888805
Alignment:
| Q |
24 |
ttgtcatgctgtgatttgtcattgaattaagattctgtcta |
64 |
Q |
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| T |
28888845 |
ttgtcatgctgtgatttgtcattgcattgagattctttcta |
28888805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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