View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5059_low_1 (Length: 573)

Name: NF5059_low_1
Description: NF5059
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5059_low_1
NF5059_low_1
[»] chr2 (2 HSPs)
chr2 (27-404)||(19804799-19805176)
chr2 (490-556)||(19805261-19805327)
[»] chr1 (2 HSPs)
chr1 (27-404)||(27775273-27775650)
chr1 (490-556)||(27775735-27775801)
[»] chr5 (1 HSPs)
chr5 (27-387)||(40577901-40578261)
[»] chr7 (1 HSPs)
chr7 (490-556)||(25752304-25752370)
[»] chr6 (1 HSPs)
chr6 (90-180)||(32879332-32879422)
[»] chr3 (1 HSPs)
chr3 (471-521)||(27439591-27439641)
[»] chr4 (2 HSPs)
chr4 (503-556)||(48085847-48085900)
chr4 (27-122)||(19312466-19312563)


Alignment Details
Target: chr2 (Bit Score: 302; Significance: 1e-169; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 302; E-Value: 1e-169
Query Start/End: Original strand, 27 - 404
Target Start/End: Original strand, 19804799 - 19805176
Alignment:
Q  27 aaaggcaatgaattgacacgacaatgaaaactaaatcaaaaagctaagggatcaaaagcaatgtgtcttacagcaccagcaatagcacatgaataatatg 126  Q
    |||||||||||||| ||||| ||||||| |||||||||||||||||||| |||||||||||| |||||||| |||||||||||||||||||||||||| |    
T  19804799 aaaggcaatgaatttacacggcaatgaacactaaatcaaaaagctaaggaatcaaaagcaatatgtcttacggcaccagcaatagcacatgaataatagg 19804898  T
Q  127 gattaaagtagctagcaatcaaacaacgatgaataatagtaaagagactcaatggaaattgaatgaataaataaggatgaaagaaacaaaagcaaataaa 226  Q
    ||||||||||||||||||| ||||||| | |||||||||||||||||||||||| |||||| ||||||||||||| |||||||||||||| |||||||||    
T  19804899 gattaaagtagctagcaataaaacaactaagaataatagtaaagagactcaatgtaaattggatgaataaataagaatgaaagaaacaaaggcaaataaa 19804998  T
Q  227 taaataacaacagggatgcagaaatttcaaacagaaactttcagggaccaaattgcacgaaaatgtgaagatgaatctgaaatttatttcttcacaaagt 326  Q
    ||||||| |||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||    
T  19804999 taaataagaacagggatgcagaaattgcaaacagaaactttcagggaccgaattgcacgaaaatgtaaagatgaatctgaaatttatttcttcacaaagt 19805098  T
Q  327 ggttcgaaaatctcatacaattctgcaggaacgatttttgtttgaatcggaattgaattacagtgaggaatcacaact 404  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  19805099 ggttcgaaaatctcatacaattctgcaggaacgatttttgtttgaatcggaattgaattacagtgagaaatcacaact 19805176  T

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Target: chr2; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 490 - 556
Target Start/End: Original strand, 19805261 - 19805327
Alignment:
Q  490 ccttttatagctctgaaattgcaaccaaatcatctttgcttgagcctaaagatgtggagtgaagatt 556  Q
    |||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||    
T  19805261 ccttttatagctctgaaattgccaccacatcatctttgcttgagcctaaagatgtggagtgaagatt 19805327  T

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Target: chr1 (Bit Score: 302; Significance: 1e-169; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 302; E-Value: 1e-169
Query Start/End: Original strand, 27 - 404
Target Start/End: Original strand, 27775273 - 27775650
Alignment:
Q  27 aaaggcaatgaattgacacgacaatgaaaactaaatcaaaaagctaagggatcaaaagcaatgtgtcttacagcaccagcaatagcacatgaataatatg 126  Q
    |||||||||||||| ||||| ||||||| |||||||||||||||||||| |||||||||||| |||||||| |||||||||||||||||||||||||| |    
T  27775273 aaaggcaatgaatttacacggcaatgaacactaaatcaaaaagctaaggaatcaaaagcaatatgtcttacggcaccagcaatagcacatgaataatagg 27775372  T
Q  127 gattaaagtagctagcaatcaaacaacgatgaataatagtaaagagactcaatggaaattgaatgaataaataaggatgaaagaaacaaaagcaaataaa 226  Q
    ||||||||||||||||||| ||||||| | |||||||||||||||||||||||| |||||| ||||||||||||| |||||||||||||| |||||||||    
T  27775373 gattaaagtagctagcaataaaacaactaagaataatagtaaagagactcaatgtaaattggatgaataaataagaatgaaagaaacaaaggcaaataaa 27775472  T
Q  227 taaataacaacagggatgcagaaatttcaaacagaaactttcagggaccaaattgcacgaaaatgtgaagatgaatctgaaatttatttcttcacaaagt 326  Q
    ||||||| |||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||    
T  27775473 taaataagaacagggatgcagaaattgcaaacagaaactttcagggaccgaattgcacgaaaatgtaaagatgaatctgaaatttatttcttcacaaagt 27775572  T
Q  327 ggttcgaaaatctcatacaattctgcaggaacgatttttgtttgaatcggaattgaattacagtgaggaatcacaact 404  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  27775573 ggttcgaaaatctcatacaattctgcaggaacgatttttgtttgaatcggaattgaattacagtgagaaatcacaact 27775650  T

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Target: chr1; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 490 - 556
Target Start/End: Original strand, 27775735 - 27775801
Alignment:
Q  490 ccttttatagctctgaaattgcaaccaaatcatctttgcttgagcctaaagatgtggagtgaagatt 556  Q
    |||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||    
T  27775735 ccttttatagctctgaaattgccaccacatcatctttgcttgagcctaaagatgtggagtgaagatt 27775801  T

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Target: chr5 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 27 - 387
Target Start/End: Complemental strand, 40578261 - 40577901
Alignment:
Q  27 aaaggcaatgaattgacacgacaatgaaaactaaatcaaaaagctaagggatcaaaagcaatgtgtcttacagcaccagcaatagcacatgaataatatg 126  Q
    |||||||||||||| ||||| ||||||| ||||||||||||||||| || |||||||||||| |||||||| |||||||||||||||||||||||||| |    
T  40578261 aaaggcaatgaatttacacggcaatgaacactaaatcaaaaagctatggaatcaaaagcaatatgtcttacggcaccagcaatagcacatgaataatagg 40578162  T
Q  127 gattaaagtagctagcaatcaaacaacgatgaataatagtaaagagactcaatggaaattgaatgaataaataaggatgaaagaaacaaaagcaaataaa 226  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||    
T  40578161 gattaaagtagctagcaatcaaacaactatgaataatagtaaagagactcaatggaaattggatgaataaataagaatgaaagaaacaaaagcaaataaa 40578062  T
Q  227 taaataacaacagggatgcagaaatttcaaacagaaactttcagggaccaaattgcacgaaaatgtgaagatgaatctgaaatttatttcttcacaaagt 326  Q
    ||||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  40578061 taaataagaacagagatgcagaaattgcaaacagaaactttcagggaccaaattgcacgaaaatgtaaagatgaatctgaaatttatttcttcacaaagt 40577962  T
Q  327 ggttcgaaaatctcatacaattctgcaggaacgatttttgtttgaatcggaattgaattac 387  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  40577961 ggttcgaaaatctcatacaattctgcaggaacgattattgtttgaatcggaattgaattac 40577901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 490 - 556
Target Start/End: Complemental strand, 25752370 - 25752304
Alignment:
Q  490 ccttttatagctctgaaattgcaaccaaatcatctttgcttgagcctaaagatgtggagtgaagatt 556  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||    
T  25752370 ccttttatagctctgaaattgcaaccaaatcatcttttcttgagcctaaagctgtggagtgaagatt 25752304  T

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Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 90 - 180
Target Start/End: Original strand, 32879332 - 32879422
Alignment:
Q  90 tgtcttacagcaccagcaatagcacatgaataatatggattaaagtagctagcaatcaaacaacgatgaataatagtaaagagactcaatg 180  Q
    |||||||  |||||||||||| ||||||||||| | |||||||||||||||||||||||||||| |||||||| |||||||| ||| ||||    
T  32879332 tgtcttatggcaccagcaataacacatgaataacaaggattaaagtagctagcaatcaaacaacaatgaataacagtaaagaaacttaatg 32879422  T

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Target: chr3 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 471 - 521
Target Start/End: Complemental strand, 27439641 - 27439591
Alignment:
Q  471 tttctgatgagtagcatctccttttatagctctgaaattgcaaccaaatca 521  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27439641 tttctgatgagtagcatctccttttatagctctgaaattgcaaccaaatca 27439591  T

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Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 503 - 556
Target Start/End: Complemental strand, 48085900 - 48085847
Alignment:
Q  503 tgaaattgcaaccaaatcatctttgcttgagcctaaagatgtggagtgaagatt 556  Q
    |||||||||||| ||||||||||||||||||||||||| | |||||||||||||    
T  48085900 tgaaattgcaactaaatcatctttgcttgagcctaaagttctggagtgaagatt 48085847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 27 - 122
Target Start/End: Original strand, 19312466 - 19312563
Alignment:
Q  27 aaaggcaatgaattgacacgacaatgaaaactaaatc---aaaaagctaagggatcaaaagcaatgtgtcttacagcaccagcaatagcacatgaataa 122  Q
    |||||||||||||||||||| ||| ||||||||||||   | ||||| || |||| ||||||||| |||||||| |||||||||| | | |||||||||    
T  19312466 aaaggcaatgaattgacacggcaacgaaaactaaatcattataaagccaa-ggattaaaagcaatatgtcttacggcaccagcaacaactcatgaataa 19312563  T

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