View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5059_low_11 (Length: 237)
Name: NF5059_low_11
Description: NF5059
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5059_low_11 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 30505409 - 30505180
Alignment:
| Q |
1 |
tatcataatatgaatttagaagtaaatgtaatagacttgtgtagttagcttcttcatttgtaacagacgtgttttttgtgatttgtaagggactaaagtg |
100 |
Q |
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| T |
30505409 |
tatcataatatgaatttagaagtaaatgtaatagacttgtgtagttagcttcttcatttgtaacagacgtgttttttgtgatttgtgagggactaaagtg |
30505310 |
T |
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| Q |
101 |
tgttttttctcatttaagagattattcaatcatctcttaaattaaagcgtgagggactaaattcatgattcaatcataaattttagttcatggattaaca |
200 |
Q |
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| T |
30505309 |
tgttttttctcatttaagagattattcaaccatctcttaaattaaagcgtgagggactaaattcatgattcaatcataaattttagttcatggattaaca |
30505210 |
T |
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| Q |
201 |
tgaattttattttggcttaattgcattttt |
230 |
Q |
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| T |
30505209 |
tgaattttattttggcttaattgcattttt |
30505180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 199 - 237
Target Start/End: Original strand, 42436814 - 42436852
Alignment:
| Q |
199 |
catgaattttattttggcttaattgcatttttggccccc |
237 |
Q |
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| T |
42436814 |
catgaattttcttttggcttaattgcatttttggccccc |
42436852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 237
Target Start/End: Complemental strand, 29776942 - 29776910
Alignment:
| Q |
205 |
ttttattttggcttaattgcatttttggccccc |
237 |
Q |
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| T |
29776942 |
ttttattttggcttaattgcacttttggccccc |
29776910 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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