View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5059_low_9 (Length: 264)
Name: NF5059_low_9
Description: NF5059
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5059_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 30505487 - 30505735
Alignment:
| Q |
1 |
tacatttgcatttcattcaactgatatttcactatatccatctcacatttactaattttagcttccacatctctcttcatttgagtctccatcacgtcta |
100 |
Q |
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| T |
30505487 |
tacatttgcatttcattcaactgatatttcactatatccatcttacatttactaattttagcttccacatcgctcttcatttgagtctccatcacgtcca |
30505586 |
T |
|
| Q |
101 |
ttccctctttaaccgaatctccgtcactttcatattcctcttcaacacattaactttggtttcgagcaactaagattttgtaaccactaacttaataaat |
200 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30505587 |
ttccctctttaaccgaatttccgtcactttcatattcctcttcaacacattaactttggtttcgagcaactaagattttgtaaccactaacttaataaat |
30505686 |
T |
|
| Q |
201 |
tcatcaccctaaaagaaataagaactattattacagaggggatatatga |
249 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
30505687 |
tcatcaccctaaaagaaataagaactattattatagaggggatatatga |
30505735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 71
Target Start/End: Complemental strand, 6538112 - 6538080
Alignment:
| Q |
39 |
catctcacatttactaattttagcttccacatc |
71 |
Q |
| |
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||||||||||||||||||||||||||||||||| |
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| T |
6538112 |
catctcacatttactaattttagcttccacatc |
6538080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 71
Target Start/End: Complemental strand, 6538287 - 6538255
Alignment:
| Q |
39 |
catctcacatttactaattttagcttccacatc |
71 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
6538287 |
catctcacatttactaattttagcttccacatc |
6538255 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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