View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5060-Insertion-1 (Length: 708)
Name: NF5060-Insertion-1
Description: NF5060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5060-Insertion-1 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 657; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 657; E-Value: 0
Query Start/End: Original strand, 7 - 708
Target Start/End: Original strand, 29007954 - 29008655
Alignment:
| Q |
7 |
atatttaccagcagccattcgagtaactactatcttccacacatgaactttgagtaatttgcttacactacaagaaaactttgttttatcgaccaaaatt |
106 |
Q |
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| T |
29007954 |
atatttacaagcagccattcgagtaactactatcttccacacatgaactttgagtaatttgcttacactacaagaaaactttgttttatcgaccaaaatt |
29008053 |
T |
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| Q |
107 |
tccgaggaaaaggtgagtcctcgcnnnnnnncagggtatttgtgacagtgttttttaagtgttttcaatcttcatcatgtttgggttgcatattgcatgt |
206 |
Q |
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| T |
29008054 |
tccgaggaaaaggtgagtcctcacaaaaaaacagggtatttgtgacagtgttttttaagtgttttcaatcttcatcatgttttggttgcatattgcatgt |
29008153 |
T |
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| Q |
207 |
gttactttttgagcaattaatgagattttgctctacgcttccagattttaagcaacttctcaagtaaaaattgcaagcggtgtggactatatgaggaaaa |
306 |
Q |
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| T |
29008154 |
gttactttttgagcaattactgagattttgctctacgcttccagattttaagcaacttctcaagtaaaaattgcaagcggtgtggactatatgaggaaaa |
29008253 |
T |
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| Q |
307 |
cagtattacttcagacgatgcttttgacgagtgggagttttgtccttccgattttactgcaccccatggtgaatatgttaggttcaaggaaaaacaattc |
406 |
Q |
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| T |
29008254 |
cagtattacttcagacgatgcttttgacgagtgggagttttgtccttccgattttactgcaccccatggtgaatatgttaggttcaaggaaaaacaattc |
29008353 |
T |
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| Q |
407 |
aatgctacttttctgtgcccagattgcttatcttttggtggtgagtatcttacaacttttgctttgaagattatttatttccgcaatgaatattctttat |
506 |
Q |
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| T |
29008354 |
aatgctacttttctgtgcccagattgtttatcttttggtggtgagtatcttacaacttttgctttgaagattatttatttccgcaatgaatattctttat |
29008453 |
T |
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| Q |
507 |
tacttcatgatgctatttgaccaatggatacatcaactagatatttggaaaagagtatttgtgacccagttgatgccattgaaaaagttgtttacttatt |
606 |
Q |
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| T |
29008454 |
tccttcatgatgctatttgaccaatggatacatcaactagatatttggaaaagagtatttgtgacccagttgatgccattgaaaaagttgtttacttatt |
29008553 |
T |
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| Q |
607 |
caaaattatgtaatttcaattttgatgaatgattctctcaatctctagttctaatgagtttatgtcaacacataagcaagaaacttcaattcgactaccc |
706 |
Q |
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| T |
29008554 |
caaaattatgtaatttcaattttgatgaatgattctctcaatctctagttctaatgagtttatgtcaacacataagcaagaaacttcaattcgactaccc |
29008653 |
T |
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| Q |
707 |
aa |
708 |
Q |
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| T |
29008654 |
aa |
29008655 |
T |
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Back To:
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Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 278 - 442
Target Start/End: Original strand, 40371965 - 40372129
Alignment:
| Q |
278 |
tgcaagcggtgtggactatatgaggaaaacagtattacttcagacgatgcttttgacgagtgggagttttgtccttccgattttactgcaccccatggtg |
377 |
Q |
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| T |
40371965 |
tgcaagcgatgtggattctatgagaaagacagtgttctttctgatgatgaatttgatgagtgggagctgtgtccttctgattttactgcccctgatggaa |
40372064 |
T |
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| Q |
378 |
aatatgttaggttcaaggaaaaacaattcaatgctacttttctgtgcccagattgcttatctttt |
442 |
Q |
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| T |
40372065 |
aatatgtccacttcaaggaaaaagaacttaatgctagttttatatgccctgaatgcttatctttt |
40372129 |
T |
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