View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5060-Insertion-10 (Length: 310)
Name: NF5060-Insertion-10
Description: NF5060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5060-Insertion-10 |
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Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 8 - 224
Target Start/End: Complemental strand, 29200010 - 29199794
Alignment:
| Q |
8 |
acctaggtctttaggatgtgaaactctagatctaaatttagcgacattgttgacaacatcttttatagggaaagatggagcaccagcagaagaagaatga |
107 |
Q |
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| T |
29200010 |
acctaggtctttaggatgtgaaactctagatctaaatttagcgacattgttgacaacatcttttatagggaaagatggagcaccagcagaagaagaatga |
29199911 |
T |
|
| Q |
108 |
cgaagaggcgaagagaatcgcgttcgaatttgattaagacctaacgacgaagcttgcaaaatggaagaagaataagaacattcagcacgttcgaattcac |
207 |
Q |
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| T |
29199910 |
cgaagaggcgaagagaatcgcgttcgaatttgattaagacctaacgacgaagcttgcaaaatggaagaagaataagaacattcagcacgttcgaattcac |
29199811 |
T |
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| Q |
208 |
gttcagttacaagaacg |
224 |
Q |
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||||||||||||||||| |
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| T |
29199810 |
gttcagttacaagaacg |
29199794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 269 - 310
Target Start/End: Complemental strand, 29199755 - 29199714
Alignment:
| Q |
269 |
actttcctcctcattgtcatgattcttgttcttattattctc |
310 |
Q |
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| T |
29199755 |
actttcctcctcattgtcatgattcttgttcttattattctc |
29199714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 8 - 224
Target Start/End: Original strand, 12651881 - 12652097
Alignment:
| Q |
8 |
acctaggtctttaggatgtgaaactctagatctaaatttagcgacattgttgacaacatcttttatagggaaagatggagcaccagcagaagaagaatga |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12651881 |
acctaggtctttaggatgtgaaactctagatctaaatttagcgacattgttgacaacatcttttatagggaaagatggagcaccagcagaagaagaatga |
12651980 |
T |
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| Q |
108 |
cgaagaggcgaagagaatcgcgttcgaatttgattaagacctaacgacgaagcttgcaaaatggaagaagaataagaacattcagcacgttcgaattcac |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12651981 |
cgaagaggcgaagagaatcgcgttcgaatttgattaagacctaacgacgaagcttgcaaaatggaagaagaataagaacattcagcacgttcgaattcac |
12652080 |
T |
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| Q |
208 |
gttcagttacaagaacg |
224 |
Q |
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||||||||| |||||| |
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| T |
12652081 |
tttcagttacgagaacg |
12652097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 269 - 310
Target Start/End: Original strand, 12652124 - 12652165
Alignment:
| Q |
269 |
actttcctcctcattgtcatgattcttgttcttattattctc |
310 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
12652124 |
actttcctcctcattgtcatgattcttgttcttattattctc |
12652165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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