View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5060-Insertion-2 (Length: 538)

Name: NF5060-Insertion-2
Description: NF5060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5060-Insertion-2
NF5060-Insertion-2
[»] chr7 (5 HSPs)
chr7 (363-538)||(31548098-31548273)
chr7 (139-209)||(31547864-31547934)
chr7 (101-143)||(31547781-31547823)
chr7 (8-58)||(31551441-31551491)
chr7 (144-195)||(46444082-46444133)
[»] chr3 (1 HSPs)
chr3 (144-213)||(51292436-51292505)
[»] chr8 (1 HSPs)
chr8 (147-195)||(37628643-37628691)


Alignment Details
Target: chr7 (Bit Score: 100; Significance: 3e-49; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 363 - 538
Target Start/End: Original strand, 31548098 - 31548273
Alignment:
Q  363 caacttcttttaagcgtgcaacttattcaattatatttaatgnnnnnnnngttcaaataatttaatggctagaaattcacatagattgtaaagcaatacc 462  Q
    ||||| ||||||| || |||||||||||||||||||||||||        | | ||||| |||| ||||||||||||||||||||| |||||||||||||    
T  31548098 caactacttttaaacgcgcaacttattcaattatatttaatgttttttttgcttaaatagtttagtggctagaaattcacatagatagtaaagcaatacc 31548197  T
Q  463 ttcgacgtcatcttcctttgtaacaatgaactcaagattgacaatccattcaaactttaccttctagattgttgag 538  Q
    ||| | |||||||||||||||||||| |||||||||||||||||| |||| |||||||||||||||||||||||||    
T  31548198 ttcaatgtcatcttcctttgtaacaacgaactcaagattgacaattcatttaaactttaccttctagattgttgag 31548273  T

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Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 139 - 209
Target Start/End: Original strand, 31547864 - 31547934
Alignment:
Q  139 aaggagaggttattgattatttgaaactagaggggaggtgtttgacatttaactaaaacaaaggggaggtg 209  Q
    ||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||  ||||||||||    
T  31547864 aaggagaggttattgattatttgaaactagaggcgaggtgtgtgacatttaactaaaacttaggggaggtg 31547934  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 101 - 143
Target Start/End: Original strand, 31547781 - 31547823
Alignment:
Q  101 aataattgggttgctatgaaaatatataagatttctagaagga 143  Q
    ||||||| |||||||||||||||||||||||||||||||||||    
T  31547781 aataattaggttgctatgaaaatatataagatttctagaagga 31547823  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 31551441 - 31551491
Alignment:
Q  8 gttatggttgtgcttgaaatttttgcagatcttgggtatcctaaattttcc 58  Q
    ||||||||| |||||||||||||||||| ||||||| ||||| ||||||||    
T  31551441 gttatggttatgcttgaaatttttgcagctcttgggcatcctgaattttcc 31551491  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 144 - 195
Target Start/End: Complemental strand, 46444133 - 46444082
Alignment:
Q  144 gaggttattgattatttgaaactagaggggaggtgtttgacatttaactaaa 195  Q
    ||||||||||| ||||  |||||||||||||||||| |||| ||||||||||    
T  46444133 gaggttattgaatattccaaactagaggggaggtgtgtgacgtttaactaaa 46444082  T

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Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 144 - 213
Target Start/End: Original strand, 51292436 - 51292505
Alignment:
Q  144 gaggttattgattatttgaaactagaggggaggtgtttgacatttaactaaaacaaaggggaggtggttg 213  Q
    ||||||||||  | |||||||||||||||||||||| ||||||||||||||| |  ||||||||||||||    
T  51292436 gaggttattgtatttttgaaactagaggggaggtgtgtgacatttaactaaaccttaggggaggtggttg 51292505  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 147 - 195
Target Start/End: Complemental strand, 37628691 - 37628643
Alignment:
Q  147 gttattgattatttgaaactagaggggaggtgtttgacatttaactaaa 195  Q
    |||||||  ||||||||| |||||||||||||| |||||||||||||||    
T  37628691 gttattgtatatttgaaattagaggggaggtgtgtgacatttaactaaa 37628643  T

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