View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5060-Insertion-3 (Length: 507)

Name: NF5060-Insertion-3
Description: NF5060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5060-Insertion-3
NF5060-Insertion-3
[»] chr2 (1 HSPs)
chr2 (7-507)||(44818643-44819143)


Alignment Details
Target: chr2 (Bit Score: 476; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 7 - 507
Target Start/End: Original strand, 44818643 - 44819143
Alignment:
Q  7 agtgttgaaaaataagatatgagtacttgattattcgtttggaaatgtaccaaacttgtttgcactattgatgtatattctggacagaaatcaaaatcag 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44818643 agtgttgaaaaataagatatgagtacttgattattcgtttggaaatgtaccaaacttgtttgcactattgatgtatattctggacagaaatcaaaatcag 44818742  T
Q  107 caaatgcaacaaaacaataaacaaactaatgataattacactgtttttgattcatacaacaaacaaacaatgtatctatgaattgtagcgaagactttga 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44818743 caaatgcaacaaaacaataaacaaactaatgataattacactgtttttgattcatacaacaaacaaacaatgtatctatgaattgtagcgaagactttga 44818842  T
Q  207 tttatcaaaagcaaaacagccacaagcacaggagttgaaatgataacaagagccaatacaagatttggagttgttatctctggaaaaatagcactgccat 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44818843 tttatcaaaagcaaaacagccacaagcacaggagttgaaatgataacaagagccaatacaagatttggagttgttatctctggaaaaatagcactgccat 44818942  T
Q  307 actttattacacctgcaccaccaaatgaacccaccactagttttgccacatacactatatcctccttctgttttacatacaccattcacaataaaatata 406  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44818943 actttattacacctgcaccaccaaatgaacccaccactagttttgccaaatacactatatcctccttctgttttacatacaccattcacaataaaatata 44819042  T
Q  407 tgcatgtgtattagcaacaaagtagtttaattatgaaacaaaatagnnnnnnngggattgagattttacttgagatgaataagtgctagagttctgagct 506  Q
    ||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||    
T  44819043 tgcatgtgtattagcaacaaagtagtttaattatgaaacaaaatagaaaaaaagggattgagattttacttgagatgaataagtgctagagttctgagct 44819142  T
Q  507 c 507  Q
    |    
T  44819143 c 44819143  T

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