View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5060-Insertion-4 (Length: 412)

Name: NF5060-Insertion-4
Description: NF5060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5060-Insertion-4
NF5060-Insertion-4
[»] chr3 (11 HSPs)
chr3 (6-277)||(48078118-48078387)
chr3 (324-412)||(29096106-29096194)
chr3 (359-412)||(35424165-35424218)
chr3 (298-412)||(28939646-28939759)
chr3 (320-412)||(15877752-15877843)
chr3 (343-393)||(55051854-55051904)
chr3 (359-412)||(14898472-14898525)
chr3 (359-412)||(35846189-35846242)
chr3 (320-405)||(49644383-49644467)
chr3 (295-412)||(53464263-53464379)
chr3 (380-412)||(52313937-52313969)
[»] chr7 (3 HSPs)
chr7 (298-412)||(38346378-38346492)
chr7 (359-412)||(8404779-8404832)
chr7 (379-412)||(36118086-36118119)
[»] chr2 (10 HSPs)
chr2 (324-412)||(43490502-43490590)
chr2 (293-412)||(3739498-3739616)
chr2 (301-412)||(38609930-38610040)
chr2 (359-412)||(14657524-14657577)
chr2 (361-412)||(4897253-4897304)
chr2 (361-412)||(4944647-4944698)
chr2 (359-405)||(8322191-8322237)
chr2 (378-412)||(33386720-33386754)
chr2 (359-412)||(9104603-9104656)
chr2 (296-405)||(37069921-37070029)
[»] chr4 (13 HSPs)
chr4 (298-412)||(30052382-30052496)
chr4 (294-412)||(43354933-43355049)
chr4 (293-412)||(55875964-55876082)
chr4 (298-412)||(19485792-19485908)
chr4 (359-410)||(9268364-9268415)
chr4 (293-412)||(23559982-23560100)
chr4 (298-412)||(779867-779980)
chr4 (378-412)||(7907419-7907453)
chr4 (298-412)||(38567979-38568092)
chr4 (296-394)||(46382047-46382144)
chr4 (359-412)||(24310220-24310273)
chr4 (359-412)||(34388833-34388886)
chr4 (359-412)||(55875854-55875907)
[»] chr5 (5 HSPs)
chr5 (298-412)||(10523804-10523917)
chr5 (328-412)||(14593867-14593950)
chr5 (343-412)||(35470337-35470407)
chr5 (322-412)||(23089337-23089426)
chr5 (359-412)||(4925099-4925152)
[»] scaffold0015 (1 HSPs)
scaffold0015 (293-412)||(56600-56718)
[»] chr8 (6 HSPs)
chr8 (359-412)||(27594279-27594332)
chr8 (324-412)||(34954291-34954379)
chr8 (359-410)||(9682374-9682425)
chr8 (378-412)||(35158924-35158958)
chr8 (378-412)||(40278977-40279011)
chr8 (359-412)||(17312864-17312917)
[»] chr6 (2 HSPs)
chr6 (298-405)||(10682527-10682633)
chr6 (378-412)||(19763592-19763626)
[»] chr1 (6 HSPs)
chr1 (329-412)||(51613258-51613340)
chr1 (359-410)||(46823646-46823697)
chr1 (378-412)||(7900207-7900241)
chr1 (374-412)||(19993388-19993426)
chr1 (359-412)||(26707136-26707189)
chr1 (291-412)||(50428490-50428610)


Alignment Details
Target: chr3 (Bit Score: 257; Significance: 1e-143; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 6 - 277
Target Start/End: Complemental strand, 48078387 - 48078118
Alignment:
Q  6 catgattgttatgaatagaaatggtatcggtgcacggacttgattattgtgtaaactcatcggaaatttgttggttaaaaagattgatattggttatact 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  48078387 catgattgttatgaatagaaatggtatcggtgcacggacttgattattgtgtaaactcatcggaaatgtgttggttaaaaagattgatattggttatact 48078288  T
Q  106 ccattatctcttctcacaagtttcctcttataggggaaagacaagtgttggatggggtgttggtgaagaacaaggtggtggattttacaaagaaatcaca 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48078287 ccattatctcttctcacaagtttcctcttataggggaaagacaagtgttggatggggtgttggtgaagaacaaggtggtggattttacaaagaaatcaca 48078188  T
Q  206 taagcaaagtcttgttttgaaggtcgatttgtgaagacatttatgtgattcgataaattaaagttttctaga 277  Q
    ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48078187 taagcaaagtct--ttttgaaggtcgatttgtgaagacatttatgtgattcgataaattaaagttttctaga 48078118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 324 - 412
Target Start/End: Original strand, 29096106 - 29096194
Alignment:
Q  324 attgatggtataaatggaccccacacaatatataaatattatttcacatcttttaattatttaaaccactcaattacattttctaaata 412  Q
    ||||||||||||||||||||||||||||||||||| ||||| ||||||| ||| ||||||||||||||||||| |||||| | ||||||    
T  29096106 attgatggtataaatggaccccacacaatatataactattacttcacatttttcaattatttaaaccactcaactacattatttaaata 29096194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 359 - 412
Target Start/End: Original strand, 35424165 - 35424218
Alignment:
Q  359 atattatttcacatcttttaattatttaaaccactcaattacattttctaaata 412  Q
    |||||| ||||||| ||| ||||||||||||||||||| |||||||||||||||    
T  35424165 atattacttcacatttttcaattatttaaaccactcaactacattttctaaata 35424218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 298 - 412
Target Start/End: Original strand, 28939646 - 28939759
Alignment:
Q  298 agagcatccacctccatgctatccatattgatggtataaatggaccccacacaatatataaatattatttcacatcttttaattatttaaaccactcaat 397  Q
    ||||||||||| || |||  || ||| ||| |||||||||| ||||||||  ||||||| | ||||| ||||||  | | |||||||||||| ||||||     
T  28939646 agagcatccacgtcaatgtcattcattttggtggtataaatagaccccacctaatatatta-tattacttcacacttctcaattatttaaactactcaac 28939744  T
Q  398 tacattttctaaata 412  Q
    |||||||||||||||    
T  28939745 tacattttctaaata 28939759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 320 - 412
Target Start/End: Original strand, 15877752 - 15877843
Alignment:
Q  320 ccatattgatggtataaatggaccccacacaatatataaatattatttcacatcttttaattatttaaaccactcaattacattttctaaata 412  Q
    |||||| | ||||||||||||  |||||| |||| || | ||||| ||||||| |||  |||||||||||||||||| || ||||||||||||    
T  15877752 ccatatgggtggtataaatgggtcccacataatacatta-tattacttcacatttttccattatttaaaccactcaactatattttctaaata 15877843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 343 - 393
Target Start/End: Complemental strand, 55051904 - 55051854
Alignment:
Q  343 cccacacaatatataaatattatttcacatcttttaattatttaaaccact 393  Q
    |||| |||||||||||||||||||||||||  || ||||||||||| ||||    
T  55051904 cccagacaatatataaatattatttcacattattcaattatttaaatcact 55051854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 359 - 412
Target Start/End: Complemental strand, 14898525 - 14898472
Alignment:
Q  359 atattatttcacatcttttaattatttaaaccactcaattacattttctaaata 412  Q
    ||||||||| |||| ||| |||| ||||||||||| || |||||||||||||||    
T  14898525 atattattttacatttttcaattgtttaaaccactaaactacattttctaaata 14898472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 359 - 412
Target Start/End: Original strand, 35846189 - 35846242
Alignment:
Q  359 atattatttcacatcttttaattatttaaaccactcaattacattttctaaata 412  Q
    ||||||||| |||  ||| |||||||||||||| |||| |||||||||||||||    
T  35846189 atattattttacacttttcaattatttaaaccattcaactacattttctaaata 35846242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 320 - 405
Target Start/End: Complemental strand, 49644467 - 49644383
Alignment:
Q  320 ccatattgatggtataaatggaccccacacaatatataaatattatttcacatcttttaattatttaaaccactcaattacatttt 405  Q
    |||||| | |||| ||||||||||||||  ||||||| | ||||| ||||||  | | ||||||||||||||||||| ||||||||    
T  49644467 ccatatgggtggtttaaatggaccccacttaatatatta-tattacttcacacttctcaattatttaaaccactcaactacatttt 49644383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 412
Target Start/End: Original strand, 53464263 - 53464379
Alignment:
Q  295 ctaagagcatccacctccatgctatccatattgatggtataaatggaccccacacaatatataaatattatttcacatcttttaattatttaaaccactc 394  Q
    ||||||||| |||| ||||||| | ||| || | ||||||||||||  |||||| | || || | ||||| || |||  || || |||||||||||||||    
T  53464263 ctaagagcacccacatccatgccacccaaatgggtggtataaatgggacccacatattacatta-tattactttacactttctagttatttaaaccactc 53464361  T
Q  395 aattacattttctaaata 412  Q
    || |||||||||||||||    
T  53464362 aactacattttctaaata 53464379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 380 - 412
Target Start/End: Original strand, 52313937 - 52313969
Alignment:
Q  380 ttatttaaaccactcaattacattttctaaata 412  Q
    ||||||||||||||||| |||||||||||||||    
T  52313937 ttatttaaaccactcaactacattttctaaata 52313969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 1e-29; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 298 - 412
Target Start/End: Original strand, 38346378 - 38346492
Alignment:
Q  298 agagcatccacctccatgctatccatattgatggtataaatggaccccacacaatatataaatattatttcacatcttttaattatttaaaccactcaat 397  Q
    ||||||||||| |||||   ||||| ||||||||||||||||||||||| | ||||||||||||||| |||| || |||||||||||||||||||||||     
T  38346378 agagcatccacatccatatcatccacattgatggtataaatggaccccatataatatataaatattacttcatattttttaattatttaaaccactcaac 38346477  T
Q  398 tacattttctaaata 412  Q
    |||||||| ||||||    
T  38346478 tacattttttaaata 38346492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 359 - 412
Target Start/End: Original strand, 8404779 - 8404832
Alignment:
Q  359 atattatttcacatcttttaattatttaaaccactcaattacattttctaaata 412  Q
    |||||||||||||  ||  |||||||||||||||||||||||||||| ||||||    
T  8404779 atattatttcacactttccaattatttaaaccactcaattacattttttaaata 8404832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 379 - 412
Target Start/End: Original strand, 36118086 - 36118119
Alignment:
Q  379 attatttaaaccactcaattacattttctaaata 412  Q
    ||||||||||||||||||||||||||||||||||    
T  36118086 attatttaaaccactcaattacattttctaaata 36118119  T

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Target: chr2 (Bit Score: 61; Significance: 5e-26; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 324 - 412
Target Start/End: Complemental strand, 43490590 - 43490502
Alignment:
Q  324 attgatggtataaatggaccccacacaatatataaatattatttcacatcttttaattatttaaaccactcaattacattttctaaata 412  Q
    |||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||| || |||| |||||||| ||||||    
T  43490590 attgatggtataaatgaaccccacataatatataaatattatttcacattttttaattatttaaatcattcaaatacattttttaaata 43490502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 293 - 412
Target Start/End: Complemental strand, 3739616 - 3739498
Alignment:
Q  293 ctctaagagcatccacctccatgctatccatattgatggtataaatggaccccacacaatatataaatattatttcacatcttttaattatttaaaccac 392  Q
    |||||||||||||||| ||||| | | |||||| ||||||||||||||| ||||   |||| ||  ||||||| |||||  || | ||||||||||||||    
T  3739616 ctctaagagcatccacatccataccacccatatggatggtataaatggatcccattgaatacat-tatattatctcacactttcttattatttaaaccac 3739518  T
Q  393 tcaattacattttctaaata 412  Q
    | || |||||||||||||||    
T  3739517 ttaactacattttctaaata 3739498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 301 - 412
Target Start/End: Complemental strand, 38610040 - 38609930
Alignment:
Q  301 gcatccacctccatgctatccatattgatggtataaatggaccccacacaatatataaatattatttcacatcttttaattatttaaaccactcaattac 400  Q
    |||||||| ||||| | | | |||||||||||||||||||| | |||  ||||||| | |||||||| |||  || | |||||||||||||||||||||     
T  38610040 gcatccacatccataccacctatattgatggtataaatggatctcactgaatatatta-tattattttacactttcttattatttaaaccactcaattat 38609942  T
Q  401 attttctaaata 412  Q
    ||||||||||||    
T  38609941 attttctaaata 38609930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 359 - 412
Target Start/End: Complemental strand, 14657577 - 14657524
Alignment:
Q  359 atattatttcacatcttttaattatttaaaccactcaattacattttctaaata 412  Q
    |||||||||||||  ||  ||||||||||||||||||| |||||||||||||||    
T  14657577 atattatttcacactttccaattatttaaaccactcaactacattttctaaata 14657524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 361 - 412
Target Start/End: Complemental strand, 4897304 - 4897253
Alignment:
Q  361 attatttcacatcttttaattatttaaaccactcaattacattttctaaata 412  Q
    |||| ||||||| ||| |||||||||||| |||||| |||||||||||||||    
T  4897304 attacttcacatttttcaattatttaaactactcaactacattttctaaata 4897253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 361 - 412
Target Start/End: Complemental strand, 4944698 - 4944647
Alignment:
Q  361 attatttcacatcttttaattatttaaaccactcaattacattttctaaata 412  Q
    |||| ||||||| ||| |||||||||||| |||||| |||||||||||||||    
T  4944698 attacttcacatttttcaattatttaaactactcaactacattttctaaata 4944647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 359 - 405
Target Start/End: Complemental strand, 8322237 - 8322191
Alignment:
Q  359 atattatttcacatcttttaattatttaaaccactcaattacatttt 405  Q
    |||||| ||||||  ||| ||||||||||||||||||||||||||||    
T  8322237 atattacttcacacttttcaattatttaaaccactcaattacatttt 8322191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 378 - 412
Target Start/End: Original strand, 33386720 - 33386754
Alignment:
Q  378 aattatttaaaccactcaattacattttctaaata 412  Q
    ||||||||||||||||||||| |||||||||||||    
T  33386720 aattatttaaaccactcaattgcattttctaaata 33386754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 359 - 412
Target Start/End: Original strand, 9104603 - 9104656
Alignment:
Q  359 atattatttcacatcttttaattatttaaaccactcaattacattttctaaata 412  Q
    |||||||||||||  | | ||||||||||||||||||| |||||||| ||||||    
T  9104603 atattatttcacaattctcaattatttaaaccactcaactacattttttaaata 9104656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 405
Target Start/End: Complemental strand, 37070029 - 37069921
Alignment:
Q  296 taagagcatccacctccatgctatccatattgatggtataaatggaccccacacaatatataaatattatttcacatcttttaattatttaaaccactca 395  Q
    ||||||||||||| ||||||| | |||| | | ||||||||||||  |||||| |||||| | ||||||||| |||  |   |||||||||||||||||     
T  37070029 taagagcatccacatccatgccacccatttgggtggtataaatgggtcccacataatata-atatattattttacacttcccaattatttaaaccactct 37069931  T
Q  396 attacatttt 405  Q
     |||||||||    
T  37069930 cttacatttt 37069921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 7e-25; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 298 - 412
Target Start/End: Complemental strand, 30052496 - 30052382
Alignment:
Q  298 agagcatccacctccatgctatccatattgatggtataaatggaccccacacaatatataaatattatttcacatcttttaattatttaaaccactcaat 397  Q
    ||||||||||| ||||| | | ||| |||||| |||||||| ||||||||||||||| ||||||||| |||| || |||||||||||||||||| ||||     
T  30052496 agagcatccacatccataccacccacattgatagtataaatagaccccacacaatatttaaatattacttcatattttttaattatttaaaccaatcaac 30052397  T
Q  398 tacattttctaaata 412  Q
    |||||||| ||||||    
T  30052396 tacattttttaaata 30052382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 294 - 412
Target Start/End: Original strand, 43354933 - 43355049
Alignment:
Q  294 tctaagagcatccacctccatgctatccatattgatggtataaatggaccccacacaatatataaatattatttcacatcttttaattatttaaaccact 393  Q
    ||||||||||||||| ||||||  || |||||||||||||||||| ||| |||| ||||||||  |||||| || ||| | || ||||||||||||||||    
T  43354933 tctaagagcatccacatccatgacattcatattgatggtataaatagactccactcaatatat-tatattactttaca-ccttcaattatttaaaccact 43355030  T
Q  394 caattacattttctaaata 412  Q
    |||||||||||| ||||||    
T  43355031 caattacattttttaaata 43355049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 293 - 412
Target Start/End: Original strand, 55875964 - 55876082
Alignment:
Q  293 ctctaagagcatccacctccatgctatccatattgatggtataaatggaccccacacaatatataaatattatttcacatcttttaattatttaaaccac 392  Q
    |||||||||||||||| ||||| ||| | || ||| |||||||||||||||| ||  |||||||  |||||| ||||||  | | |||||||||||| |     
T  55875964 ctctaagagcatccacatccatactacctattttggtggtataaatggaccctacttaatatat-tatattacttcacacttctcaattatttaaactat 55876062  T
Q  393 tcaattacattttctaaata 412  Q
    |||| |||| ||||||||||    
T  55876063 tcaactacactttctaaata 55876082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 298 - 412
Target Start/End: Complemental strand, 19485908 - 19485792
Alignment:
Q  298 agagcatccacctccatgctatccatattgatggtataaatggaccccac-ac--aatatataaatattatttcacatcttttaattatttaaaccactc 394  Q
    |||||| |||| ||||||  |||||||| | |||||||||||||| |||| ||  |||| || | |||||||| |||  |||||||||||||||||| ||    
T  19485908 agagcacccacatccatgtcatccatatgggtggtataaatggactccactacttaatacatta-tattattttacactttttaattatttaaaccattc 19485810  T
Q  395 aattacattttctaaata 412  Q
    | ||||||||||||||||    
T  19485809 acttacattttctaaata 19485792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 359 - 410
Target Start/End: Original strand, 9268364 - 9268415
Alignment:
Q  359 atattatttcacatcttttaattatttaaaccactcaattacattttctaaa 410  Q
    |||||| ||||||  ||| ||||||||||||||||||| |||||||||||||    
T  9268364 atattacttcacacttttcaattatttaaaccactcaactacattttctaaa 9268415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 293 - 412
Target Start/End: Original strand, 23559982 - 23560100
Alignment:
Q  293 ctctaagagcatccacctccatgctatccatattgatggtataaatggaccccacacaatatataaatattatttcacatcttttaattatttaaaccac 392  Q
    |||| |||||| |||| ||||||| | ||| || | ||||||||||||  |||||| ||||||| |  |||| || |||  ||  |||||||||||||||    
T  23559982 ctcttagagcacccacatccatgccacccaaatgggtggtataaatgggacccacataatatattac-attactttacactttccaattatttaaaccac 23560080  T
Q  393 tcaattacattttctaaata 412  Q
    |||| |||||||||||||||    
T  23560081 tcaactacattttctaaata 23560100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 298 - 412
Target Start/End: Original strand, 779867 - 779980
Alignment:
Q  298 agagcatccacctccatgctatccatattgatggtataaatggaccccacacaatatataaatattatttcacatcttttaattatttaaaccactcaat 397  Q
    |||||| |||| ||||| | | |||||| | ||||||||||||  | |||| |||| || | ||||| ||||||| |||  ||||||||||||||||||     
T  779867 agagcacccacatccataccacccatatgggtggtataaatgggtctcacataatacatta-tattacttcacatttttccattatttaaaccactcaac 779965  T
Q  398 tacattttctaaata 412  Q
    || ||||||||||||    
T  779966 tatattttctaaata 779980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 378 - 412
Target Start/End: Complemental strand, 7907453 - 7907419
Alignment:
Q  378 aattatttaaaccactcaattacattttctaaata 412  Q
    ||||||||||||||||||| |||||||||||||||    
T  7907453 aattatttaaaccactcaactacattttctaaata 7907419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 298 - 412
Target Start/End: Complemental strand, 38568092 - 38567979
Alignment:
Q  298 agagcatccacctccatgctatccatattgatggtataaatggaccccacacaatatataaatattatttcacatcttttaattatttaaaccactcaat 397  Q
    ||||||||||| ||||||| |   | |||| |||||| |||||||| ||| |||||||| | ||||| |||  |  ||| |||||||||||||||||||     
T  38568092 agagcatccacatccatgccacttacattggtggtatgaatggacctcactcaatatatta-tattacttcttacttttcaattatttaaaccactcaac 38567994  T
Q  398 tacattttctaaata 412  Q
    |||||||| ||||||    
T  38567993 tacattttttaaata 38567979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 296 - 394
Target Start/End: Complemental strand, 46382144 - 46382047
Alignment:
Q  296 taagagcatccacctccatgctatccatattgatggtataaatggaccccacacaatatataaatattatttcacatcttttaattatttaaaccactc 394  Q
    ||||||||||||| ||||||| | |||  ||| |||||||||||||||| ||  |||||||  |||||| ||||||  | | |||||||||||||||||    
T  46382144 taagagcatccacatccatgccacccaatttggtggtataaatggaccctacttaatatat-tatattagttcacacttctcaattatttaaaccactc 46382047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 359 - 412
Target Start/End: Original strand, 24310220 - 24310273
Alignment:
Q  359 atattatttcacatcttttaattatttaaaccactcaattacattttctaaata 412  Q
    ||||||||| |||| |||||||||||||||| | ||||||| ||||| ||||||    
T  24310220 atattattttacatattttaattatttaaacaattcaattatattttataaata 24310273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 359 - 412
Target Start/End: Original strand, 34388833 - 34388886
Alignment:
Q  359 atattatttcacatcttttaattatttaaaccactcaattacattttctaaata 412  Q
    ||||||||| |||| ||| |||||||||||||||| ||  ||||||||||||||    
T  34388833 atattattttacatttttcaattatttaaaccactaaaccacattttctaaata 34388886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 359 - 412
Target Start/End: Complemental strand, 55875907 - 55875854
Alignment:
Q  359 atattatttcacatcttttaattatttaaaccactcaattacattttctaaata 412  Q
    |||||| ||||||||| | ||||| ||||||||||||| |||||||| ||||||    
T  55875907 atattacttcacatctctcaattacttaaaccactcaactacattttttaaata 55875854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 298 - 412
Target Start/End: Original strand, 10523804 - 10523917
Alignment:
Q  298 agagcatccacctccatgctatccatattgatggtataaatggaccccacacaatatataaatattatttcacatcttttaattatttaaaccactcaat 397  Q
    |||||| |||| ||||||  | |||||||| ||||||||||||||||||| ||||| || | |||||||| |||  |||||||||||||||||||||| |    
T  10523804 agagcacccacatccatgtcacccatattggtggtataaatggaccccactcaatacatta-tattattttacactttttaattatttaaaccactcact 10523902  T
Q  398 tacattttctaaata 412  Q
    |||||||||||||||    
T  10523903 tacattttctaaata 10523917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 328 - 412
Target Start/End: Original strand, 14593867 - 14593950
Alignment:
Q  328 atggtataaatggaccccacacaatatataaatattatttcacatcttttaattatttaaaccactcaattacattttctaaata 412  Q
    ||||||||||||||| |||| |||||||| | ||||| ||||||  | | |||||||||||||| ||||||||||||| ||||||    
T  14593867 atggtataaatggactccactcaatatatta-tattacttcacaaatctcaattatttaaaccattcaattacattttataaata 14593950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 343 - 412
Target Start/End: Complemental strand, 35470407 - 35470337
Alignment:
Q  343 cccacacaatatataaatatta-tttcacatcttttaattatttaaaccactcaattacattttctaaata 412  Q
    |||||| ||||||||| ||||| |||||||| ||| |||||||||||| |||||| || ||||||||||||    
T  35470407 cccacataatatataattattaatttcacatttttcaattatttaaactactcaactatattttctaaata 35470337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 322 - 412
Target Start/End: Complemental strand, 23089426 - 23089337
Alignment:
Q  322 atattgatggtataaatggaccccacacaatatataaatattatttcacatcttttaattatttaaaccactcaattacattttctaaata 412  Q
    |||| ||||||||||||||| |||| | ||||||| | ||||||||||||| ||  ||||||||||| ||||||   ||||||| ||||||    
T  23089426 atatggatggtataaatggatcccatataatatatta-tattatttcacattttccaattatttaaatcactcatccacattttttaaata 23089337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 359 - 412
Target Start/End: Original strand, 4925099 - 4925152
Alignment:
Q  359 atattatttcacatcttttaattatttaaaccactcaattacattttctaaata 412  Q
    |||||| ||||||  ||| ||||||||||||||||||| |||||||| ||||||    
T  4925099 atattacttcacacttttcaattatttaaaccactcaactacattttttaaata 4925152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 293 - 412
Target Start/End: Complemental strand, 56718 - 56600
Alignment:
Q  293 ctctaagagcatccacctccatgctatccatattgatggtataaatggaccccacacaatatataaatattatttcacatcttttaattatttaaaccac 392  Q
    ||||||||||| |||| ||||||| ||||| || ||||||||||||||  |||||| |||||||  |||||| || |||  | | |||||||||||||||    
T  56718 ctctaagagcaaccacatccatgccatccaaatggatggtataaatgggacccacataatatat-tatattactttacacttctcaattatttaaaccac 56620  T
Q  393 tcaattacattttctaaata 412  Q
    |||| |||||||||||||||    
T  56619 tcaactacattttctaaata 56600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 359 - 412
Target Start/End: Complemental strand, 27594332 - 27594279
Alignment:
Q  359 atattatttcacatcttttaattatttaaaccactcaattacattttctaaata 412  Q
    ||||||||||||| |||  ||||||||||||||||||| |||||||||||||||    
T  27594332 atattatttcacaccttccaattatttaaaccactcaactacattttctaaata 27594279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 324 - 412
Target Start/End: Original strand, 34954291 - 34954379
Alignment:
Q  324 attgatggtataaatggaccccacacaatatataaa-tattatttcacatcttttaattatttaaaccactcaattacattttctaaata 412  Q
    |||||||||||||||  | || ||| |||||||||| ||||| |||| || ||||||||||||||||||||||| |||||||| ||||||    
T  34954291 attgatggtataaataaatcctacataatatataaaatattacttcatat-ttttaattatttaaaccactcaactacattttttaaata 34954379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 359 - 410
Target Start/End: Complemental strand, 9682425 - 9682374
Alignment:
Q  359 atattatttcacatcttttaattatttaaaccactcaattacattttctaaa 410  Q
    |||||| ||||||  ||| ||||||||||||||||||| |||||||||||||    
T  9682425 atattacttcacacttttcaattatttaaaccactcaactacattttctaaa 9682374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 378 - 412
Target Start/End: Original strand, 35158924 - 35158958
Alignment:
Q  378 aattatttaaaccactcaattacattttctaaata 412  Q
    ||||||||||||||||||| |||||||||||||||    
T  35158924 aattatttaaaccactcaactacattttctaaata 35158958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 378 - 412
Target Start/End: Complemental strand, 40279011 - 40278977
Alignment:
Q  378 aattatttaaaccactcaattacattttctaaata 412  Q
    ||||||||||||||||||| |||||||||||||||    
T  40279011 aattatttaaaccactcaactacattttctaaata 40278977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 359 - 412
Target Start/End: Complemental strand, 17312917 - 17312864
Alignment:
Q  359 atattatttcacatcttttaattatttaaaccactcaattacattttctaaata 412  Q
    |||||| ||||||  ||| ||||||||||||||||||| ||||| |||||||||    
T  17312917 atattacttcacacttttcaattatttaaaccactcaactacatcttctaaata 17312864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 298 - 405
Target Start/End: Complemental strand, 10682633 - 10682527
Alignment:
Q  298 agagcatccacctccatgctatccatattgatggtataaatggaccccacacaatatataaatattatttcacatcttttaattatttaaaccactcaat 397  Q
    ||||||||||| | ||| | | |||||| |||||| ||||||||||||||  ||||||| | ||||| ||||||  | | |||||||||||||||||||     
T  10682633 agagcatccacattcattccacccatatggatggtttaaatggaccccacttaatatatta-tattacttcacacttctcaattatttaaaccactcaac 10682535  T
Q  398 tacatttt 405  Q
    ||||||||    
T  10682534 tacatttt 10682527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 378 - 412
Target Start/End: Original strand, 19763592 - 19763626
Alignment:
Q  378 aattatttaaaccactcaattacattttctaaata 412  Q
    |||||||||||||||| ||||||||||||||||||    
T  19763592 aattatttaaaccacttaattacattttctaaata 19763626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 329 - 412
Target Start/End: Original strand, 51613258 - 51613340
Alignment:
Q  329 tggtataaatggaccccacacaatatataaatattatttcacatcttttaattatttaaaccactcaattacattttctaaata 412  Q
    ||||||||||||| |||||| |||| ||  |||||| ||||||  ||  ||||||||||||||||||| |||||||||||||||    
T  51613258 tggtataaatggatcccacataata-atttatattacttcacactttccaattatttaaaccactcaactacattttctaaata 51613340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 359 - 410
Target Start/End: Complemental strand, 46823697 - 46823646
Alignment:
Q  359 atattatttcacatcttttaattatttaaaccactcaattacattttctaaa 410  Q
    |||||| ||||||  ||| ||||||||||||||||||| |||||||||||||    
T  46823697 atattacttcacacttttcaattatttaaaccactcaactacattttctaaa 46823646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 378 - 412
Target Start/End: Original strand, 7900207 - 7900241
Alignment:
Q  378 aattatttaaaccactcaattacattttctaaata 412  Q
    ||||||||||||||||||| |||||||||||||||    
T  7900207 aattatttaaaccactcaactacattttctaaata 7900241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 374 - 412
Target Start/End: Complemental strand, 19993426 - 19993388
Alignment:
Q  374 ttttaattatttaaaccactcaattacattttctaaata 412  Q
    ||||||||||||||||||||||| || ||||||||||||    
T  19993426 ttttaattatttaaaccactcaactatattttctaaata 19993388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 359 - 412
Target Start/End: Complemental strand, 26707189 - 26707136
Alignment:
Q  359 atattatttcacatcttttaattatttaaaccactcaattacattttctaaata 412  Q
    |||||| ||||||  ||| |||||||||||||| |||| |||||||||||||||    
T  26707189 atattagttcacacttttcaattatttaaaccattcaactacattttctaaata 26707136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 412
Target Start/End: Complemental strand, 50428610 - 50428490
Alignment:
Q  291 atctctaagagcatccacctccatgctatccatattgatggtataaatggaccccacacaatatataaatattatttcacatcttttaattatttaaacc 390  Q
    |||| ||||||||||||  ||||||  || ||||| | ||||||||||||| | ||| ||||| || | ||||| ||||||  | | ||||||||||| |    
T  50428610 atctttaagagcatccatatccatgtcattcatatgggtggtataaatggatctcacgcaataaatta-tattacttcacacttctcaattatttaaatc 50428512  T
Q  391 actcaattacattttctaaata 412  Q
    |||||| || ||||||||||||    
T  50428511 actcaactatattttctaaata 50428490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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