View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5060-Insertion-5 (Length: 405)
Name: NF5060-Insertion-5
Description: NF5060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5060-Insertion-5 |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-122; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 7 - 229
Target Start/End: Complemental strand, 18426391 - 18426169
Alignment:
| Q |
7 |
agtactttcagtgattgcgaagaattcaacgtcgaaagagtttgttttagagatgttgcaagttggagcggtttccaagctttgcatggtaatgcaagcg |
106 |
Q |
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| T |
18426391 |
agtactttcagtgattgcgaagaattcaacgtcgaaagagtttgttttagagatgttgcaagttggagcggtttccaagctttgcatggtaatgcaagcg |
18426292 |
T |
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| Q |
107 |
gattgtgcttcttatttgaaagagaaagcaagagacatacttaggttacactccactacttggaataattctccatgcatacaattgtacttgttaacaa |
206 |
Q |
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| T |
18426291 |
gattgtgcttcttatttgaaagagaaagcaagagacatacttaggttacactccactacttggaataattctccatgcatacaattgtacttgttaacaa |
18426192 |
T |
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| Q |
207 |
ggcaccaaaggtgatcaaatata |
229 |
Q |
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||||||||||||||||||||||| |
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| T |
18426191 |
ggcaccaaaggtgatcaaatata |
18426169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 226 - 361
Target Start/End: Complemental strand, 18426149 - 18426014
Alignment:
| Q |
226 |
tatattgtgcaaaaacgtatctaccatttaatgtgtacattctatatagatagaaaacaaaaaagccttcaatgtaagagtacttaatcatttttaattt |
325 |
Q |
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| T |
18426149 |
tatattgtgcaaaaacgtatctaccatttaatgtgtacattctatatagatagaaaacaaaaaagccttcaatgtaagagtacttaatcatttttaattt |
18426050 |
T |
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| Q |
326 |
gaattgataaatcaaaatgtattttgaagaaaggaa |
361 |
Q |
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| T |
18426049 |
gaattgataaatcaaattgtactttgaagaaaggaa |
18426014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 12 - 158
Target Start/End: Original strand, 21767495 - 21767637
Alignment:
| Q |
12 |
tttcagtgattgcgaagaattcaacgtcgaaagagtttgttttagagatgttgcaagttggagcggtttccaagctttgcatggtaatgcaagcggattg |
111 |
Q |
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| T |
21767495 |
tttcagtgatggcgtagaattcaacttcgaaagagtttgttttagaaatgttgagggttggagctgtttcgaagcat---atgc-aatgcaagcggattg |
21767590 |
T |
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| Q |
112 |
tgcttcttatttgaaagagaaagcaagagacatacttaggttacact |
158 |
Q |
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| T |
21767591 |
tgcttcttatttgaaagagaaagcaagagatatacttaggttacact |
21767637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 27 - 158
Target Start/End: Original strand, 21768349 - 21768476
Alignment:
| Q |
27 |
agaattcaacgtcgaaagagtttgttttagagatgttgcaagttggagcggtttccaagctttgcatggtaatgcaagcggattgtgcttcttatttgaa |
126 |
Q |
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| T |
21768349 |
agaattcaacttcgaaagagtttgttttagaaatgttgagggttggagctgtttcgaagcat---atgc-aatgcaagcggattgtgcttctgatttgaa |
21768444 |
T |
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| Q |
127 |
agagaaagcaagagacatacttaggttacact |
158 |
Q |
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| T |
21768445 |
agagaaagcatgagatatacttaggttacact |
21768476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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