View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5060-Insertion-6 (Length: 360)
Name: NF5060-Insertion-6
Description: NF5060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5060-Insertion-6 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 313; Significance: 1e-176; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 8 - 360
Target Start/End: Original strand, 26886025 - 26886377
Alignment:
| Q |
8 |
atcattgcattactatactctcaggtactaggaatgttcgaattttaaatgtttttgtggttttggtcatgaaattaatgtcggaagtctaggcaagtat |
107 |
Q |
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| T |
26886025 |
atcattgcattactatgctctcaggtactaggaatgttcgaattttaaatgtttttgtggttttggtcatgaaattaatgtcggaagtctaggcaagtat |
26886124 |
T |
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| Q |
108 |
gaaagtgaacaagatcttgatgacatagttgttaaaaattgcacccttagtggtacaagtattgatgttagaatcaaatcatgggagtctcagttgaggt |
207 |
Q |
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| T |
26886125 |
gaaagtgaataagatcttgatgacatagttgttaaaaattgcacccttagtggtacaagtattgatgttagaatcaaatcatgggagtctcagttgaagt |
26886224 |
T |
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| Q |
208 |
aaactttggttgcttttaattttgtatataaagatattgtgatggataatgtgcaatattctattgtcattgattgatcaagattattgtccacattctc |
307 |
Q |
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| T |
26886225 |
aaactttggttgcttttaattttatatataaagatattgtgatggataatgtgcaataccccattgtcattgattgatcaagattattgtccacattctc |
26886324 |
T |
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| Q |
308 |
tgtgcttcaaaaaggcttgtactatttcttggtttgaatattatacttttaga |
360 |
Q |
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| T |
26886325 |
tgtgcttcaaaaaggtttgtactatttcttggttcaaatattatacttttaga |
26886377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 14 - 360
Target Start/End: Original strand, 26884323 - 26884670
Alignment:
| Q |
14 |
gcattactatactctcaggtactaggaatgttcgaattttaaatgtttt-tgtggttttggtcatgaaattaatgtcggaagtctaggcaagtatgaaag |
112 |
Q |
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| T |
26884323 |
gcattactatgctctcaagtactacgaatgttcgaatttcaaatgttttttgtggtttttgtcatgaaattagtgtcggaagtcttggtaagtatgaaag |
26884422 |
T |
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| Q |
113 |
tgaacaagatcttgatgacatagttgttaaaaattgcacccttagtggtacaagtattgatgttagaatcaaatcatgggagtctcagttgaggtaaact |
212 |
Q |
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| T |
26884423 |
tgaacaagatcttgatgacataattgttacaaattgtacctttagtggtacaagtattgatgttagaatcaaatcatggaagtctcaattgaagtaaact |
26884522 |
T |
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| Q |
213 |
ttggttgcttttaattttgtatataaagatattgtgatggataatgtgcaatattctattgtcattgattgatcaagattattgtccacattctctgtgc |
312 |
Q |
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| T |
26884523 |
ttggttgcttttaattttgtatataaagatattgtggtggataatgtgcaatatcccattgtcattgattgatcaagattattgtcctaattctctgtgc |
26884622 |
T |
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| Q |
313 |
ttcaaaaaggcttgtactatttcttggtttgaatattatacttttaga |
360 |
Q |
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| T |
26884623 |
tccaaaaaggtttgtactctttcttggttcaaatattatacttttaga |
26884670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 14 - 360
Target Start/End: Original strand, 26883623 - 26883970
Alignment:
| Q |
14 |
gcattactatactctcaggtactaggaatgttcgaattttaaatgtttt-tgtggttttggtcatgaaattaatgtcggaagtctaggcaagtatgaaag |
112 |
Q |
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| T |
26883623 |
gcattactatgctctcaagtactacgaatgttcgaatttcaaatattttttgtggttttggtcatgaaattagtgtcggaagtcttggtaagtatgaaag |
26883722 |
T |
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| Q |
113 |
tgaacaagatcttgatgacatagttgttaaaaattgcacccttagtggtacaagtattgatgttagaatcaaatcatgggagtctcagttgaggtaaact |
212 |
Q |
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| T |
26883723 |
tgaacaagatcttgatgacataattgttacaaattgtacctttagtggtacaagtattgatgttagaatcaaatcatgaaagtctcaattgaagtaaact |
26883822 |
T |
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| Q |
213 |
ttggttgcttttaattttgtatataaagatattgtgatggataatgtgcaatattctattgtcattgattgatcaagattattgtccacattctctgtgc |
312 |
Q |
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| T |
26883823 |
ttggttgcttttaattttgtatataaagatattgtggtggataatgtgcaatatcccattgtcattgattgatcaagattattgtcctaattccctgtgc |
26883922 |
T |
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| Q |
313 |
ttcaaaaaggcttgtactatttcttggtttgaatattatacttttaga |
360 |
Q |
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| T |
26883923 |
tccaaaaaggtttgtactctttcttggttcaaatattatacttttaga |
26883970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 117; Significance: 2e-59; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 11 - 327
Target Start/End: Original strand, 11532384 - 11532697
Alignment:
| Q |
11 |
attgcattactatactctcaggtactaggaatgttcgaattttaaatgttttt-gtggttttggtcatgaaattaatgtcggaagtctaggcaagtatga |
109 |
Q |
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|||||||| |||| |||||||||||||||||||||||||||| | |||||||| ||||| |||||||| ||||| |||||||||||| || | |||| |
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| T |
11532384 |
attgcattgctatgctctcaggtactaggaatgttcgaatttcagatgttttttgtggtcctggtcatggaattagtgtcggaagtcttggtgggaatga |
11532483 |
T |
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| Q |
110 |
aagtgaacaagatcttgatgacatagttgttaaaaattgcacccttagtggtacaagtattgatgttagaatcaaatcatgggagtctcagttgaggtaa |
209 |
Q |
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| T |
11532484 |
aggtgaagaagatattgatgacattgttgttaagaattgtacctttaatggcacaagtaacggtgttagaatcaaatcgtgggagtctcaattgaagaaa |
11532583 |
T |
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| Q |
210 |
actttggttgcttttaattttgtatataaagatattgtgatggataatgtgcaatattctattgtcattgattgatcaagattattgtccacattctctg |
309 |
Q |
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| T |
11532584 |
actttggttgtttctaattttacatatgaagatattgtgatgaataatgtgcaaaatcccattgtc----attgatcaagattattgttcacatcctcca |
11532679 |
T |
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| Q |
310 |
tgcttcaaaaaggcttgt |
327 |
Q |
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| T |
11532680 |
tgcatcaaaaaggtttgt |
11532697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 62 - 260
Target Start/End: Original strand, 26301555 - 26301753
Alignment:
| Q |
62 |
ttgtggttttggtcatgaaattaatgtcggaagtctaggcaagtatgaaagtgaacaagatcttgatgacatagttgttaaaaattgcacccttagtggt |
161 |
Q |
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||||||| |||||||| ||| || |||||||||| || ||||||||| ||| ||||||||| |||||| ||||||| |||||||| ||| |||| |
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| T |
26301555 |
ttgtggtcctggtcatggaataaacatcggaagtcttggtaagtatgaagacgaagaagatcttgccgacataattgttaagaattgcacatttaatggt |
26301654 |
T |
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| Q |
162 |
acaagtattgatgttagaatcaaatcatgggagtctcagttgaggtaaactttggttgcttttaattttgtatataaagatattgtgatggataatgtg |
260 |
Q |
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| T |
26301655 |
acgagtaatggagttagaatcaaatcatatgagtcacaattgaacaaaaccgtggttgcttctaatttcatatatgaggatattgtgatggaaaatgtg |
26301753 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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