View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5060-Insertion-7 (Length: 326)
Name: NF5060-Insertion-7
Description: NF5060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5060-Insertion-7 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 307; Significance: 1e-173; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 8 - 326
Target Start/End: Original strand, 1482646 - 1482964
Alignment:
| Q |
8 |
agttgaaggagatatcatagagcaaaaggaaaaggagatttgggctgagcttaatcatcttccgatgatttatagggttccaaaagcaaagaacttggtg |
107 |
Q |
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| T |
1482646 |
agttgaaggagatatcatagagcaaaaggaaaaggagatttgggctgagcttaatcatcttctgatgatttatagggatccaaaagcaaagaacttggtg |
1482745 |
T |
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| Q |
108 |
atttttccaatctgcttaatcttctgcttgaagattaaagctgtatacattttagatttttccttgcatcaccattctttgatgattttgttgcaatttt |
207 |
Q |
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| T |
1482746 |
atttttccaatctgcttaatcttctgcttgaagattaaagctgtatacattttagatttttccttgcatcaccattctttgatgattttgttgcaatttt |
1482845 |
T |
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| Q |
208 |
ggtataatccattgtatatattacaatgtatgactataattttgaattgaatgacacctgtttcttttctcttaatcaaattgtttggaattcaccatga |
307 |
Q |
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| T |
1482846 |
ggtataatccattgtatatattacaatgtatgactataattttgaattgaatgacacctgtttcttttctcttaatcaaattgtttggaattcaccatga |
1482945 |
T |
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| Q |
308 |
ctctttctttgatataata |
326 |
Q |
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| T |
1482946 |
ctctttgtttgatataata |
1482964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 10 - 321
Target Start/End: Original strand, 36717375 - 36717692
Alignment:
| Q |
10 |
ttgaaggagatatcatagagcaaaaggaaaaggagatttgggctgagcttaatcatcttccgatgatttatagggttccaa------aagcaaagaactt |
103 |
Q |
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| T |
36717375 |
ttgaaggagaaatcttagagcaaatgggaaaggagatttgggctgagcttaatcatcttctgatgatttatagggcttcaagaaggaaagcagagaactt |
36717474 |
T |
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| Q |
104 |
ggtgatttttccaatctgcttaatcttctgcttgaagattaaagctgtatacattttagatttttccttgcatcaccattctttgatgattttgttgcaa |
203 |
Q |
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| T |
36717475 |
ggtgtttgatccagtttgtgtaatcttctacttgaagattatagctgtatacattttagatttttccttgcatcatcattctttgatgattttgttgcaa |
36717574 |
T |
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| Q |
204 |
ttttggtataatccattgtatatattacaatgtatgactataattttgaattgaatgacacctgtttcttttctcttaatcaaattgtttggaattcacc |
303 |
Q |
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| T |
36717575 |
ttttggtgtaatccattgtatatattacaatgtatgactatagttttgaatcgaatgacacctatttcttttctcttaatcaaattgtttggaattcacc |
36717674 |
T |
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| Q |
304 |
atgactctttctttgata |
321 |
Q |
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| T |
36717675 |
atgattctttgtttgata |
36717692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 134 - 196
Target Start/End: Original strand, 1483267 - 1483329
Alignment:
| Q |
134 |
cttgaagattaaagctgtatacattttagatttttccttgcatcaccattctttgatgatttt |
196 |
Q |
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| T |
1483267 |
cttgaagattacagttgtaaacattttaaatttttccttgcaccatcattctatgatgatttt |
1483329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 259
Target Start/End: Original strand, 36717995 - 36718065
Alignment:
| Q |
190 |
tgattttgttgcaattttggtataatccattgtatatattac-aatgtatgactataattttgaattgaat |
259 |
Q |
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| T |
36717995 |
tgatcttgttgcaatttaggtgtaatccattgtctatattacaaatgtatcacaacaattttgaatcgaat |
36718065 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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