View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5060-Insertion-8 (Length: 141)

Name: NF5060-Insertion-8
Description: NF5060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5060-Insertion-8
NF5060-Insertion-8
[»] chr2 (16 HSPs)
chr2 (46-141)||(39865351-39865446)
chr2 (49-141)||(29770743-29770835)
chr2 (55-140)||(39864751-39864835)
chr2 (73-141)||(4329599-4329667)
chr2 (75-140)||(4330161-4330226)
chr2 (43-88)||(19037725-19037770)
chr2 (55-138)||(29771326-29771404)
chr2 (48-123)||(9074574-9074648)
chr2 (55-98)||(28277517-28277560)
chr2 (44-87)||(35851917-35851960)
chr2 (46-88)||(22068466-22068508)
chr2 (47-97)||(26154636-26154686)
chr2 (47-88)||(561665-561706)
chr2 (55-116)||(30674073-30674134)
chr2 (48-88)||(32361016-32361056)
chr2 (48-87)||(6580188-6580227)
[»] chr7 (16 HSPs)
chr7 (48-141)||(31167007-31167100)
chr7 (48-141)||(28750973-28751066)
chr7 (55-140)||(31166406-31166490)
chr7 (48-99)||(15577445-15577496)
chr7 (73-140)||(21972117-21972184)
chr7 (84-141)||(21971546-21971602)
chr7 (42-86)||(12218585-12218629)
chr7 (46-141)||(38916439-38916533)
chr7 (47-96)||(31319776-31319825)
chr7 (44-88)||(18485956-18486000)
chr7 (55-95)||(31320374-31320414)
chr7 (48-96)||(35791046-35791094)
chr7 (55-95)||(35791644-35791684)
chr7 (49-97)||(36785482-36785530)
chr7 (90-141)||(27595999-27596050)
chr7 (46-87)||(34333281-34333322)
[»] chr3 (12 HSPs)
chr3 (51-141)||(23566942-23567032)
chr3 (52-140)||(39737778-39737865)
chr3 (58-140)||(39737187-39737268)
chr3 (50-99)||(53153933-53153982)
chr3 (55-95)||(23516581-23516621)
chr3 (48-97)||(18715702-18715751)
chr3 (47-88)||(46352632-46352673)
chr3 (48-88)||(272219-272259)
chr3 (48-88)||(49893330-49893370)
chr3 (47-87)||(52520679-52520719)
chr3 (52-123)||(785835-785906)
chr3 (55-98)||(18715148-18715191)
[»] chr5 (8 HSPs)
chr5 (48-141)||(39121887-39121980)
chr5 (48-113)||(20983519-20983584)
chr5 (55-120)||(20983888-20983953)
chr5 (47-96)||(1919015-1919064)
chr5 (55-95)||(1919613-1919653)
chr5 (45-87)||(10054500-10054542)
chr5 (55-116)||(14394394-14394454)
chr5 (53-88)||(10069973-10070008)
[»] chr8 (16 HSPs)
chr8 (46-141)||(26759181-26759272)
chr8 (46-140)||(186648-186742)
chr8 (55-141)||(187071-187157)
chr8 (47-141)||(308279-308373)
chr8 (52-141)||(146615-146704)
chr8 (45-97)||(15450582-15450634)
chr8 (102-137)||(26759656-26759691)
chr8 (55-98)||(45185040-45185083)
chr8 (45-88)||(4537891-4537934)
chr8 (55-98)||(5704314-5704357)
chr8 (53-88)||(13643016-13643051)
chr8 (53-88)||(13743441-13743476)
chr8 (55-98)||(15451206-15451249)
chr8 (53-88)||(16394208-16394243)
chr8 (44-87)||(30675720-30675763)
chr8 (53-88)||(39751619-39751654)
[»] chr4 (18 HSPs)
chr4 (55-138)||(28103781-28103864)
chr4 (73-141)||(38147392-38147460)
chr4 (49-113)||(43012731-43012795)
chr4 (71-141)||(12639774-12639844)
chr4 (47-141)||(54714920-54715014)
chr4 (55-120)||(43013176-43013241)
chr4 (55-99)||(27105531-27105575)
chr4 (79-141)||(917683-917745)
chr4 (48-96)||(27109067-27109115)
chr4 (103-140)||(919140-919177)
chr4 (70-140)||(28104385-28104459)
chr4 (49-93)||(29864656-29864700)
chr4 (48-98)||(23643390-23643439)
chr4 (47-87)||(15186241-15186281)
chr4 (48-87)||(4268970-4269009)
chr4 (48-87)||(18068027-18068066)
chr4 (44-79)||(43202539-43202574)
chr4 (53-88)||(54897312-54897347)
[»] chr6 (8 HSPs)
chr6 (43-141)||(8700859-8700957)
chr6 (45-98)||(12307380-12307433)
chr6 (55-99)||(2484249-2484293)
chr6 (48-96)||(2480707-2480755)
chr6 (57-116)||(12306955-12307014)
chr6 (55-116)||(8701313-8701374)
chr6 (37-87)||(392084-392134)
chr6 (48-87)||(27433491-27433530)
[»] chr1 (8 HSPs)
chr1 (55-99)||(23269929-23269973)
chr1 (55-99)||(44678132-44678176)
chr1 (44-97)||(45225747-45225800)
chr1 (45-88)||(28726053-28726096)
chr1 (42-81)||(42770144-42770183)
chr1 (53-96)||(44681682-44681725)
chr1 (48-88)||(29657770-29657810)
chr1 (53-88)||(38595900-38595935)
[»] scaffold0014 (1 HSPs)
scaffold0014 (45-88)||(68437-68480)
[»] scaffold0003 (1 HSPs)
scaffold0003 (48-87)||(53833-53872)


Alignment Details
Target: chr2 (Bit Score: 92; Significance: 5e-45; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 92; E-Value: 5e-45
Query Start/End: Original strand, 46 - 141
Target Start/End: Complemental strand, 39865446 - 39865351
Alignment:
Q  46 taagggcaatgctaaccagtgcccccggggcactggataaggaacaataaatagtaattaaataaatgaatttcacttaattcatctcaattaaag 141  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  39865446 taagggcaatgctaaccagtgcccccggggcactggataaggaacaataaatagtaattaaataaatgaatctcacttaattcatctcaattaaag 39865351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 77; E-Value: 4e-36
Query Start/End: Original strand, 49 - 141
Target Start/End: Original strand, 29770743 - 29770835
Alignment:
Q  49 gggcaatgctaaccagtgcccccggggcactggataaggaacaataaatagtaattaaataaatgaatttcacttaattcatctcaattaaag 141  Q
    |||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  29770743 gggcaatgctaaccagtgtctccggggcactggataaggaacaataaatagtaattaaataaatgaatctcacttaattcatctcagttaaag 29770835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 5e-20
Query Start/End: Original strand, 55 - 140
Target Start/End: Original strand, 39864751 - 39864835
Alignment:
Q  55 tgctaaccagtgcccccggggcactggataaggaacaataaatagtaattaaataaatgaatttcacttaattcatctcaattaaa 140  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||   ||||||||||||||| ||| |||||||||||||| ||||    
T  39864751 tgctaaccagtgcccccggggcactggataagg-acaattaatatgcattaaataaatgaatctcatttaattcatctcaaataaa 39864835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 5e-17
Query Start/End: Original strand, 73 - 141
Target Start/End: Original strand, 4329599 - 4329667
Alignment:
Q  73 gggcactggataaggaacaataaatagtaattaaataaatgaatttcacttaattcatctcaattaaag 141  Q
    ||||||||||||||||||| |||||||| | |||||||||  || ||||||||||||||||||||||||    
T  4329599 gggcactggataaggaacagtaaatagttaataaataaatagatctcacttaattcatctcaattaaag 4329667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 75 - 140
Target Start/End: Complemental strand, 4330226 - 4330161
Alignment:
Q  75 gcactggataaggaacaataaatagtaattaaataaatgaatttcacttaattcatctcaattaaa 140  Q
    ||||||||||||||||||| ||||   |||||||||||| || |||||||||||||||||||||||    
T  4330226 gcactggataaggaacaattaatatgcattaaataaatggatctcacttaattcatctcaattaaa 4330161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.0000000000008
Query Start/End: Original strand, 43 - 88
Target Start/End: Complemental strand, 19037770 - 19037725
Alignment:
Q  43 atttaagggcaatgctaaccagtgcccccggggcactggataagga 88  Q
    ||||||||||||||||| ||||||||||||||||||||| ||||||    
T  19037770 atttaagggcaatgctatccagtgcccccggggcactggttaagga 19037725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 55 - 138
Target Start/End: Complemental strand, 29771404 - 29771326
Alignment:
Q  55 tgctaaccagtgcccccggggcactggataaggaacaataaatagtaattaaataaatgaatttcacttaattcatctcaatta 138  Q
    |||||||||||||||| |||||||||||||||||  ||||   |    |||||||||||||| |||||||||||||||||||||    
T  29771404 tgctaaccagtgcccc-ggggcactggataaggactaatatgca----ttaaataaatgaatctcacttaattcatctcaatta 29771326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 48 - 123
Target Start/End: Original strand, 9074574 - 9074648
Alignment:
Q  48 agggcaatgctaaccagtgcccccggggcactggataaggaacaataaatagtaattaaataaatgaatttcactt 123  Q
    |||||| |||||||| ||||||||||| ||| |||||| |||||||||||||  | |||||||||| || ||||||    
T  9074574 agggcagtgctaaccggtgcccccggg-caccggataaagaacaataaatagacaataaataaatggatctcactt 9074648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 55 - 98
Target Start/End: Original strand, 28277517 - 28277560
Alignment:
Q  55 tgctaaccagtgcccccggggcactggataaggaacaataaata 98  Q
    |||||||  |||||||||||||||||| ||||||||||||||||    
T  28277517 tgctaactggtgcccccggggcactggttaaggaacaataaata 28277560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 44 - 87
Target Start/End: Complemental strand, 35851960 - 35851917
Alignment:
Q  44 tttaagggcaatgctaaccagtgcccccggggcactggataagg 87  Q
    |||||||| |||||||||| |||||||||||||||||| |||||    
T  35851960 tttaagggaaatgctaaccggtgcccccggggcactggttaagg 35851917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 46 - 88
Target Start/End: Complemental strand, 22068508 - 22068466
Alignment:
Q  46 taagggcaatgctaaccagtgcccccggggcactggataagga 88  Q
    |||||| ||||||||| ||||||||||||||||||| ||||||    
T  22068508 taagggaaatgctaacaagtgcccccggggcactggttaagga 22068466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 47 - 97
Target Start/End: Complemental strand, 26154686 - 26154636
Alignment:
Q  47 aagggcaatgctaaccagtgcccccggggcactggataaggaacaataaat 97  Q
    ||||||||||||| |||||| |||| ||||||||| |||||| ||||||||    
T  26154686 aagggcaatgctatccagtgtccccagggcactggttaaggagcaataaat 26154636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 47 - 88
Target Start/End: Complemental strand, 561706 - 561665
Alignment:
Q  47 aagggcaatgctaaccagtgcccccggggcactggataagga 88  Q
    ||||| |||||||||| |||||||||||||||||| ||||||    
T  561706 aagggaaatgctaaccggtgcccccggggcactggttaagga 561665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 55 - 116
Target Start/End: Original strand, 30674073 - 30674134
Alignment:
Q  55 tgctaaccagtgcccccggggcactggataaggaacaataaatagtaattaaataaatgaat 116  Q
    |||||||| ||||||||||| ||||||||||  || |||||||||  | |||||||||||||    
T  30674073 tgctaaccggtgcccccgggacactggataaaaaataataaataggcaataaataaatgaat 30674134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 48 - 88
Target Start/End: Complemental strand, 32361056 - 32361016
Alignment:
Q  48 agggcaatgctaaccagtgcccccggggcactggataagga 88  Q
    |||| |||||||||| |||||||||||||||||| ||||||    
T  32361056 agggaaatgctaaccggtgcccccggggcactggttaagga 32361016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 48 - 87
Target Start/End: Original strand, 6580188 - 6580227
Alignment:
Q  48 agggcaatgctaaccagtgcccccggggcactggataagg 87  Q
    |||| |||||||||||||||||| |||||||||| |||||    
T  6580188 agggaaatgctaaccagtgccccgggggcactggttaagg 6580227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 90; Significance: 7e-44; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 90; E-Value: 7e-44
Query Start/End: Original strand, 48 - 141
Target Start/End: Complemental strand, 31167100 - 31167007
Alignment:
Q  48 agggcaatgctaaccagtgcccccggggcactggataaggaacaataaatagtaattaaataaatgaatttcacttaattcatctcaattaaag 141  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  31167100 agggcaatgctaaccagtgcccccggggcactggataaggaacaataaatagtaattaaataaatgaatctcacttaattcatctcaattaaag 31167007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 48 - 141
Target Start/End: Complemental strand, 28751066 - 28750973
Alignment:
Q  48 agggcaatgctaaccagtgcccccggggcactggataaggaacaataaatagtaattaaataaatgaatttcacttaattcatctcaattaaag 141  Q
    ||||||||||||||| ||| ||| ||||||||||||||||||||||||||||  | |||||||||| || ||||||| || | || ||||||||    
T  28751066 agggcaatgctaaccggtgtcccaggggcactggataaggaacaataaataggcaataaataaatggatctcacttagtttaccttaattaaag 28750973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 55 - 140
Target Start/End: Original strand, 31166406 - 31166490
Alignment:
Q  55 tgctaaccagtgcccccggggcactggataaggaacaataaatagtaattaaataaatgaatttcacttaattcatctcaattaaa 140  Q
    ||||||||||||||||||||||||| ||||||| ||||| ||||   ||||||||||||||| ||| |||||||||||||| ||||    
T  31166406 tgctaaccagtgcccccggggcactagataagg-acaattaatatgcattaaataaatgaatctcatttaattcatctcaaataaa 31166490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 48 - 99
Target Start/End: Original strand, 15577445 - 15577496
Alignment:
Q  48 agggcaatgctaaccagtgcccccggggcactggataaggaacaataaatag 99  Q
    ||||||||||||||| ||||||  ||||||||||||||||||||||||||||    
T  15577445 agggcaatgctaaccggtgccctaggggcactggataaggaacaataaatag 15577496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 73 - 140
Target Start/End: Complemental strand, 21972184 - 21972117
Alignment:
Q  73 gggcactggataaggaacaataaatagtaattaaataaatgaatttcacttaattcatctcaattaaa 140  Q
    ||||||||||||||||||||| || |   ||||||||||||||| ||||||||||||||| |||||||    
T  21972184 gggcactggataaggaacaattaaaatgcattaaataaatgaatctcacttaattcatcttaattaaa 21972117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.0000000000008
Query Start/End: Original strand, 84 - 141
Target Start/End: Original strand, 21971546 - 21971602
Alignment:
Q  84 aaggaacaataaatagtaattaaataaatgaatttcacttaattcatctcaattaaag 141  Q
    ||||||||||||||| |||||||||||||| || |||||||| |||||||||||||||    
T  21971546 aaggaacaataaataataattaaataaatg-atctcacttaactcatctcaattaaag 21971602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 42 - 86
Target Start/End: Complemental strand, 12218629 - 12218585
Alignment:
Q  42 aatttaagggcaatgctaaccagtgcccccggggcactggataag 86  Q
    |||||||||| |||||||||| |||||||||||||||||||||||    
T  12218629 aatttaagggaaatgctaaccggtgcccccggggcactggataag 12218585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 46 - 141
Target Start/End: Complemental strand, 38916533 - 38916439
Alignment:
Q  46 taagggcaatgctaaccagtgcccccggggcactggataaggaacaataaatagtaattaaataaatgaatttcacttaattcatctcaattaaag 141  Q
    ||||||||||||||||| ||||| | ||| |||||||||| |||||||||||||  | |||||||||| || |||||| ||| | || ||||||||    
T  38916533 taagggcaatgctaaccggtgcctctggg-cactggataaagaacaataaatagacaataaataaatggatctcacttgatttaccttaattaaag 38916439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 47 - 96
Target Start/End: Original strand, 31319776 - 31319825
Alignment:
Q  47 aagggcaatgctaaccagtgcccccggggcactggataaggaacaataaa 96  Q
    ||||| ||||||| |||||||||| |||||||||| ||||||||||||||    
T  31319776 aagggtaatgctatccagtgcccctggggcactggttaaggaacaataaa 31319825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 44 - 88
Target Start/End: Original strand, 18485956 - 18486000
Alignment:
Q  44 tttaagggcaatgctaaccagtgcccccggggcactggataagga 88  Q
    |||||||| |||||||||| |||||||||||||||||| ||||||    
T  18485956 tttaagggaaatgctaaccggtgcccccggggcactggttaagga 18486000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 55 - 95
Target Start/End: Complemental strand, 31320414 - 31320374
Alignment:
Q  55 tgctaaccagtgcccccggggcactggataaggaacaataa 95  Q
    |||||||| |||||||||||||||||| |||||||||||||    
T  31320414 tgctaaccggtgcccccggggcactggttaaggaacaataa 31320374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 48 - 96
Target Start/End: Original strand, 35791046 - 35791094
Alignment:
Q  48 agggcaatgctaaccagtgcccccggggcactggataaggaacaataaa 96  Q
    |||| ||||||| |||||||||| |||||||||| ||||||||||||||    
T  35791046 agggtaatgctatccagtgcccctggggcactggttaaggaacaataaa 35791094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 55 - 95
Target Start/End: Complemental strand, 35791684 - 35791644
Alignment:
Q  55 tgctaaccagtgcccccggggcactggataaggaacaataa 95  Q
    |||||||| |||||||||||||||||| |||||||||||||    
T  35791684 tgctaaccggtgcccccggggcactggttaaggaacaataa 35791644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 49 - 97
Target Start/End: Original strand, 36785482 - 36785530
Alignment:
Q  49 gggcaatgctaaccagtgcccccggggcactggataaggaacaataaat 97  Q
    ||||||||||| || |||||||||||||||||| |||||| ||||||||    
T  36785482 gggcaatgctatccggtgcccccggggcactggttaaggagcaataaat 36785530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 90 - 141
Target Start/End: Original strand, 27595999 - 27596050
Alignment:
Q  90 caataaatagtaattaaataaatgaatttcacttaattcatctcaattaaag 141  Q
    ||||||||||  | |||||||||| || ||||||||||||||||||||||||    
T  27595999 caataaatagccaataaataaatggatctcacttaattcatctcaattaaag 27596050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 46 - 87
Target Start/End: Original strand, 34333281 - 34333322
Alignment:
Q  46 taagggcaatgctaaccagtgcccccggggcactggataagg 87  Q
    |||||| |||||||||| |||||||||||||||||| |||||    
T  34333281 taagggaaatgctaaccggtgcccccggggcactggttaagg 34333322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 75; Significance: 6e-35; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 6e-35
Query Start/End: Original strand, 51 - 141
Target Start/End: Complemental strand, 23567032 - 23566942
Alignment:
Q  51 gcaatgctaaccagtgcccccggggcactggataaggaacaataaatagtaattaaataaatgaatttcacttaattcatctcaattaaag 141  Q
    |||||||||||| |||| || ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  23567032 gcaatgctaaccggtgctccgggggcactggataaggaacaataaatagtaattaaataaatgaatatcacttaattcatctcaattaaag 23566942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 52 - 140
Target Start/End: Complemental strand, 39737865 - 39737778
Alignment:
Q  52 caatgctaaccagtgcccccggggcactggataaggaacaataaatagtaattaaataaatgaatttcacttaattcatctcaattaaa 140  Q
    ||||||||||| ||||||  | |||||||||||||||||||||||||||||||||||||||  || | | |||||||||||||||||||    
T  39737865 caatgctaaccggtgccct-gaggcactggataaggaacaataaatagtaattaaataaatagatcttatttaattcatctcaattaaa 39737778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 58 - 140
Target Start/End: Original strand, 39737187 - 39737268
Alignment:
Q  58 taaccagtgcccccggggcactggataaggaacaataaatagtaattaaataaatgaatttcacttaattcatctcaattaaa 140  Q
    ||||||||| ||| || ||||||||||| || |||| ||||   ||||||||||||||| ||||||||| |||||||||||||    
T  39737187 taaccagtgtcccaggagcactggataatga-caattaatatgcattaaataaatgaatctcacttaatccatctcaattaaa 39737268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 50 - 99
Target Start/End: Complemental strand, 53153982 - 53153933
Alignment:
Q  50 ggcaatgctaaccagtgcccccggggcactggataaggaacaataaatag 99  Q
    ||||||||||||| ||||||| |||| ||||||||||||| |||||||||    
T  53153982 ggcaatgctaaccggtgcccctggggtactggataaggaataataaatag 53153933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 55 - 95
Target Start/End: Complemental strand, 23516621 - 23516581
Alignment:
Q  55 tgctaaccagtgcccccggggcactggataaggaacaataa 95  Q
    |||||||| |||||||||||||||||| |||||||||||||    
T  23516621 tgctaaccggtgcccccggggcactggttaaggaacaataa 23516581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 48 - 97
Target Start/End: Complemental strand, 18715751 - 18715702
Alignment:
Q  48 agggcaatgctaaccagtgcccccggggcactggataaggaacaataaat 97  Q
    |||||||||||| |||||| |||||||||||| | |||||| ||||||||    
T  18715751 agggcaatgctatccagtgtccccggggcactagttaaggagcaataaat 18715702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 47 - 88
Target Start/End: Original strand, 46352632 - 46352673
Alignment:
Q  47 aagggcaatgctaaccagtgcccccggggcactggataagga 88  Q
    ||||| |||||||||| |||||||||||||||||| ||||||    
T  46352632 aagggaaatgctaaccggtgcccccggggcactggttaagga 46352673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 48 - 88
Target Start/End: Original strand, 272219 - 272259
Alignment:
Q  48 agggcaatgctaaccagtgcccccggggcactggataagga 88  Q
    |||| |||||||||| |||||||||||||||||| ||||||    
T  272219 agggaaatgctaaccggtgcccccggggcactggttaagga 272259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 48 - 88
Target Start/End: Original strand, 49893330 - 49893370
Alignment:
Q  48 agggcaatgctaaccagtgcccccggggcactggataagga 88  Q
    |||| |||||||||| |||||||||||||||||| ||||||    
T  49893330 agggaaatgctaaccggtgcccccggggcactggttaagga 49893370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 87
Target Start/End: Original strand, 52520679 - 52520719
Alignment:
Q  47 aagggcaatgctaaccagtgcccccggggcactggataagg 87  Q
    ||||| |||||||||| |||||||||||||||||| |||||    
T  52520679 aagggaaatgctaaccggtgcccccggggcactggttaagg 52520719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 52 - 123
Target Start/End: Complemental strand, 785906 - 785835
Alignment:
Q  52 caatgctaaccagtgcccccggggcactggataaggaacaataaatagtaattaaataaatgaatttcactt 123  Q
    ||||||||||| |||| ||||  |||||| |||||||||| |||||||  | |||||||||| || ||||||    
T  785906 caatgctaaccggtgctcccgatgcactgaataaggaacattaaataggcaataaataaatggatctcactt 785835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 55 - 98
Target Start/End: Original strand, 18715148 - 18715191
Alignment:
Q  55 tgctaaccagtgcccccggggcactggataaggaacaataaata 98  Q
    |||||||| ||||| |||||||||||| |||| |||||||||||    
T  18715148 tgctaaccggtgcctccggggcactggttaagaaacaataaata 18715191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 74; Significance: 2e-34; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 2e-34
Query Start/End: Original strand, 48 - 141
Target Start/End: Complemental strand, 39121980 - 39121887
Alignment:
Q  48 agggcaatgctaaccagtgcccccggggcactggataaggaacaataaatagtaattaaataaatgaatttcacttaattcatctcaattaaag 141  Q
    ||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||    
T  39121980 agggcaatgctaaccggtgtctccggggcactggataaggaacaataaatagtaattaaataaatgaatctcacttaatttatctcaattaaag 39121887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.0000000000008
Query Start/End: Original strand, 48 - 113
Target Start/End: Original strand, 20983519 - 20983584
Alignment:
Q  48 agggcaatgctaaccagtgcccccggggcactggataaggaacaataaatagtaattaaataaatg 113  Q
    |||| |||||||||| ||||||||||||||||||||||| || |||||||||  | ||||||||||    
T  20983519 agggtaatgctaaccggtgcccccggggcactggataagaaaaaataaatagacaataaataaatg 20983584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.0000000000008
Query Start/End: Original strand, 55 - 120
Target Start/End: Complemental strand, 20983953 - 20983888
Alignment:
Q  55 tgctaaccagtgcccccggggcactggataaggaacaataaatagtaattaaataaatgaatttca 120  Q
    ||||||||||||||||||| |||||||||||| || |||||||||  | |||||||||| ||||||    
T  20983953 tgctaaccagtgcccccggagcactggataagaaataataaataggcaataaataaatggatttca 20983888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 47 - 96
Target Start/End: Original strand, 1919015 - 1919064
Alignment:
Q  47 aagggcaatgctaaccagtgcccccggggcactggataaggaacaataaa 96  Q
    ||||| ||||||| |||||||||| |||||||||| ||||||||||||||    
T  1919015 aagggtaatgctatccagtgcccctggggcactggttaaggaacaataaa 1919064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 55 - 95
Target Start/End: Complemental strand, 1919653 - 1919613
Alignment:
Q  55 tgctaaccagtgcccccggggcactggataaggaacaataa 95  Q
    |||||||| |||||||||||||||||| |||||||||||||    
T  1919653 tgctaaccggtgcccccggggcactggttaaggaacaataa 1919613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 45 - 87
Target Start/End: Complemental strand, 10054542 - 10054500
Alignment:
Q  45 ttaagggcaatgctaaccagtgcccccggggcactggataagg 87  Q
    ||||||| |||||||||| |||||||||||||||||| |||||    
T  10054542 ttaagggaaatgctaaccggtgcccccggggcactggttaagg 10054500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 55 - 116
Target Start/End: Complemental strand, 14394454 - 14394394
Alignment:
Q  55 tgctaaccagtgcccccggggcactggataaggaacaataaatagtaattaaataaatgaat 116  Q
    |||||||||||||||| ||||||||| ||||| || |||||||||  | |||||||||||||    
T  14394454 tgctaaccagtgcccc-ggggcactgaataagaaataataaatagacaataaataaatgaat 14394394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 53 - 88
Target Start/End: Original strand, 10069973 - 10070008
Alignment:
Q  53 aatgctaaccagtgcccccggggcactggataagga 88  Q
    |||||||||| |||||||||||||||||| ||||||    
T  10069973 aatgctaaccggtgcccccggggcactggttaagga 10070008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 2e-25; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 2e-25
Query Start/End: Original strand, 46 - 141
Target Start/End: Original strand, 26759181 - 26759272
Alignment:
Q  46 taagggcaatgctaaccagtgcccccggggcactggataaggaacaataaatagtaattaaataaatgaatttcacttaattcatctcaattaaag 141  Q
    ||||||||||| ||||| |||||    || |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||    
T  26759181 taagggcaatgttaaccggtgcc----ggacactggataaggaacaataaatagtaattaaataaatggatctcacttaattcatctcaattaaag 26759272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 3e-18
Query Start/End: Original strand, 46 - 140
Target Start/End: Original strand, 186648 - 186742
Alignment:
Q  46 taagggcaatgctaaccagtgcccccggggcactggataaggaacaataaatagtaattaaataaatgaatttcacttaattcatctcaattaaa 140  Q
    ||||||||||||||||| ||||||||||| ||  ||||||||||||||||||||  | |||||||||| || |||||| ||| |||| |||||||    
T  186648 taagggcaatgctaaccggtgcccccgggacatcggataaggaacaataaatagctaataaataaatggatctcacttgatttatcttaattaaa 186742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 55 - 141
Target Start/End: Complemental strand, 187157 - 187071
Alignment:
Q  55 tgctaaccagtgcccccggggcactggataaggaacaataaatagtaattaaataaatgaatttcacttaattcatctcaattaaag 141  Q
    |||||||||||||||| ||||||||||||||| || |||||||||  | ||||||||||||| ||| ||| || | || ||||||||    
T  187157 tgctaaccagtgccccgggggcactggataagaaataataaataggcaataaataaatgaatctcaattagtttacctaaattaaag 187071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 47 - 141
Target Start/End: Original strand, 308279 - 308373
Alignment:
Q  47 aagggcaatgctaaccagtgcccccggggcactggataaggaacaataaatagtaattaaataaatgaatttcacttaattcatctcaattaaag 141  Q
    |||| ||||||||||| ||||||| ||||||| |||||| |||||||||||||  | |||||||||| || ||||||| || | || ||||||||    
T  308279 aaggacaatgctaaccggtgccccaggggcaccggataatgaacaataaataggcaataaataaatggatctcacttagtttaccttaattaaag 308373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.0000000000008
Query Start/End: Original strand, 52 - 141
Target Start/End: Original strand, 146615 - 146704
Alignment:
Q  52 caatgctaaccagtgcccccggggcactggataaggaacaataaatagtaattaaataaatgaatttcacttaattcatctcaattaaag 141  Q
    ||||||||| | ||||| ||||| |||  ||||| |||||||||||||  |||||||||||| || |||||| ||| |||||||||||||    
T  146615 caatgctaatcggtgcctccgggacacaagataatgaacaataaatagccattaaataaatggatctcactttattaatctcaattaaag 146704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 45 - 97
Target Start/End: Original strand, 15450582 - 15450634
Alignment:
Q  45 ttaagggcaatgctaaccagtgcccccggggcactggataaggaacaataaat 97  Q
    ||||||| ||||||| ||||||||||||||||||||| ||||||||| |||||    
T  15450582 ttaagggtaatgctatccagtgcccccggggcactggttaaggaacattaaat 15450634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 102 - 137
Target Start/End: Complemental strand, 26759691 - 26759656
Alignment:
Q  102 attaaataaatgaatttcacttaattcatctcaatt 137  Q
    ||||||||||||||| ||||||||||||||||||||    
T  26759691 attaaataaatgaatctcacttaattcatctcaatt 26759656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 55 - 98
Target Start/End: Complemental strand, 45185083 - 45185040
Alignment:
Q  55 tgctaaccagtgcccccggggcactggataaggaacaataaata 98  Q
    |||||||| |||||||||||||||||| |||| |||||||||||    
T  45185083 tgctaaccggtgcccccggggcactggttaagaaacaataaata 45185040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 45 - 88
Target Start/End: Complemental strand, 4537934 - 4537891
Alignment:
Q  45 ttaagggcaatgctaaccagtgcccccggggcactggataagga 88  Q
    ||||||| |||||||||| ||||| |||||||||||| ||||||    
T  4537934 ttaagggaaatgctaaccggtgcctccggggcactggttaagga 4537891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 55 - 98
Target Start/End: Complemental strand, 5704357 - 5704314
Alignment:
Q  55 tgctaaccagtgcccccggggcactggataaggaacaataaata 98  Q
    |||||||||||||||| |||||||| | |||||| |||||||||    
T  5704357 tgctaaccagtgcccctggggcacttgttaaggagcaataaata 5704314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 53 - 88
Target Start/End: Original strand, 13643016 - 13643051
Alignment:
Q  53 aatgctaaccagtgcccccggggcactggataagga 88  Q
    |||||||||| |||||||||||||||||| ||||||    
T  13643016 aatgctaaccggtgcccccggggcactggttaagga 13643051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 53 - 88
Target Start/End: Original strand, 13743441 - 13743476
Alignment:
Q  53 aatgctaaccagtgcccccggggcactggataagga 88  Q
    |||||||||| |||||||||||||||||| ||||||    
T  13743441 aatgctaaccggtgcccccggggcactggttaagga 13743476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 55 - 98
Target Start/End: Complemental strand, 15451249 - 15451206
Alignment:
Q  55 tgctaaccagtgcccccggggcactggataaggaacaataaata 98  Q
    |||||||| ||||| |||||||||||| |||||| |||||||||    
T  15451249 tgctaaccggtgcctccggggcactggttaaggagcaataaata 15451206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 53 - 88
Target Start/End: Complemental strand, 16394243 - 16394208
Alignment:
Q  53 aatgctaaccagtgcccccggggcactggataagga 88  Q
    |||||||||| |||||||||||||||||| ||||||    
T  16394243 aatgctaaccggtgcccccggggcactggttaagga 16394208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 44 - 87
Target Start/End: Complemental strand, 30675763 - 30675720
Alignment:
Q  44 tttaagggcaatgctaaccagtgcccccggggcactggataagg 87  Q
    |||| ||| |||||||||| |||||||||||||||||| |||||    
T  30675763 tttatgggaaatgctaaccggtgcccccggggcactggttaagg 30675720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 53 - 88
Target Start/End: Complemental strand, 39751654 - 39751619
Alignment:
Q  53 aatgctaaccagtgcccccggggcactggataagga 88  Q
    |||||||||| |||||||||||||||||| ||||||    
T  39751654 aatgctaaccggtgcccccggggcactggttaagga 39751619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 1e-23; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 1e-23
Query Start/End: Original strand, 55 - 138
Target Start/End: Original strand, 28103781 - 28103864
Alignment:
Q  55 tgctaaccagtgcccccggggcactggataaggaacaataaatagtaattaaataaatgaatttcacttaattcatctcaatta 138  Q
    |||||||| |||||||||||| || ||||||||||||||||||| | |||||||||||| || |||||||||||||||||||||    
T  28103781 tgctaaccggtgcccccggggtacgggataaggaacaataaataatcattaaataaatggatctcacttaattcatctcaatta 28103864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 73 - 141
Target Start/End: Original strand, 38147392 - 38147460
Alignment:
Q  73 gggcactggataaggaacaataaatagtaattaaataaatgaatttcacttaattcatctcaattaaag 141  Q
    ||||||||||||||||||| |||||||| | |||||||||| || ||||||||||||||||||||||||    
T  38147392 gggcactggataaggaacagtaaatagtcaataaataaatggatctcacttaattcatctcaattaaag 38147460  T

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Target: chr4; HSP #3
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 49 - 113
Target Start/End: Original strand, 43012731 - 43012795
Alignment:
Q  49 gggcaatgctaaccagtgcccccggggcactggataaggaacaataaatagtaattaaataaatg 113  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||  | ||||||||||    
T  43012731 gggcaatgctaaccggtgcccccggggcactggataaggaacaataaatagacaataaataaatg 43012795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 8e-16
Query Start/End: Original strand, 71 - 141
Target Start/End: Complemental strand, 12639844 - 12639774
Alignment:
Q  71 cggggcactggataaggaacaataaatagtaattaaataaatgaatttcacttaattcatctcaattaaag 141  Q
    ||||| |||||||||||||||||||||||  | |||||||||| || |||||||||||| |||||||||||    
T  12639844 cggggtactggataaggaacaataaataggcaataaataaatggatctcacttaattcacctcaattaaag 12639774  T

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Target: chr4; HSP #5
Raw Score: 43; E-Value: 8e-16
Query Start/End: Original strand, 47 - 141
Target Start/End: Complemental strand, 54715014 - 54714920
Alignment:
Q  47 aagggcaatgctaaccagtgcccccggggcactggataaggaacaataaatagtaattaaataaatgaatttcacttaattcatctcaattaaag 141  Q
    |||||||||||||||| ||||| |||||||| ||||||| ||| || ||||||  | |||||||||| ||||||||| ||| |||| ||||||||    
T  54715014 aagggcaatgctaaccggtgcctccggggcattggataaagaataaaaaataggcaataaataaatggatttcacttgatttatcttaattaaag 54714920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 55 - 120
Target Start/End: Complemental strand, 43013241 - 43013176
Alignment:
Q  55 tgctaaccagtgcccccggggcactggataaggaacaataaatagtaattaaataaatgaatttca 120  Q
    |||||||||||||||||||||||||||||||| || |||||||||  | |||||||||| ||||||    
T  43013241 tgctaaccagtgcccccggggcactggataagaaataataaataggcaataaataaatggatttca 43013176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 55 - 99
Target Start/End: Original strand, 27105531 - 27105575
Alignment:
Q  55 tgctaaccagtgcccccggggcactggataaggaacaataaatag 99  Q
    ||||||||||||||||||||||||||||||||||||| |||||||    
T  27105531 tgctaaccagtgcccccggggcactggataaggaacattaaatag 27105575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 79 - 141
Target Start/End: Original strand, 917683 - 917745
Alignment:
Q  79 tggataaggaacaataaatagtaattaaataaatgaatttcacttaattcatctcaattaaag 141  Q
    ||||||| |||||||||||||| | ||||||||||||| | | ||||||||||||||||||||    
T  917683 tggataaagaacaataaatagtcaataaataaatgaatctaagttaattcatctcaattaaag 917745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 48 - 96
Target Start/End: Complemental strand, 27109115 - 27109067
Alignment:
Q  48 agggcaatgctaaccagtgcccccggggcactggataaggaacaataaa 96  Q
    |||| ||||||| ||||||||||||||||||||| ||||||||||||||    
T  27109115 agggtaatgctatccagtgcccccggggcactggttaaggaacaataaa 27109067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 103 - 140
Target Start/End: Complemental strand, 919177 - 919140
Alignment:
Q  103 ttaaataaatgaatttcacttaattcatctcaattaaa 140  Q
    |||||||||||||| |||||||||||||||||||||||    
T  919177 ttaaataaatgaatctcacttaattcatctcaattaaa 919140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 70 - 140
Target Start/End: Complemental strand, 28104459 - 28104385
Alignment:
Q  70 ccggggcactggataaggaacaataaatag----taattaaataaatgaatttcacttaattcatctcaattaaa 140  Q
    ||||||||||  |||||||||||| ||||     |||||||||||||| || |||||||||||||||||||||||    
T  28104459 ccggggcactaaataaggaacaattaatatgcattaattaaataaatggatctcacttaattcatctcaattaaa 28104385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 49 - 93
Target Start/End: Original strand, 29864656 - 29864700
Alignment:
Q  49 gggcaatgctaaccagtgcccccggggcactggataaggaacaat 93  Q
    ||||||||||||||| ||||||||| |||| ||||||||||||||    
T  29864656 gggcaatgctaaccactgcccccggagcaccggataaggaacaat 29864700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 48 - 98
Target Start/End: Original strand, 23643390 - 23643439
Alignment:
Q  48 agggcaatgctaaccagtgcccccggggcactggataaggaacaataaata 98  Q
    |||||||||||||||  |||||| ||||||| |||||||||||||||||||    
T  23643390 agggcaatgctaaccgatgcccc-ggggcaccggataaggaacaataaata 23643439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 87
Target Start/End: Original strand, 15186241 - 15186281
Alignment:
Q  47 aagggcaatgctaaccagtgcccccggggcactggataagg 87  Q
    ||||| |||||||||| |||||||||||||||||| |||||    
T  15186241 aagggaaatgctaaccggtgcccccggggcactggttaagg 15186281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 48 - 87
Target Start/End: Complemental strand, 4269009 - 4268970
Alignment:
Q  48 agggcaatgctaaccagtgcccccggggcactggataagg 87  Q
    |||| |||||||||| |||||||||||||||||| |||||    
T  4269009 agggaaatgctaaccggtgcccccggggcactggttaagg 4268970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 48 - 87
Target Start/End: Complemental strand, 18068066 - 18068027
Alignment:
Q  48 agggcaatgctaaccagtgcccccggggcactggataagg 87  Q
    |||| |||||||||| |||||||||||||||||| |||||    
T  18068066 agggaaatgctaaccggtgcccccggggcactggttaagg 18068027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 44 - 79
Target Start/End: Complemental strand, 43202574 - 43202539
Alignment:
Q  44 tttaagggcaatgctaaccagtgcccccggggcact 79  Q
    |||||||| |||||||||| ||||||||||||||||    
T  43202574 tttaagggaaatgctaaccggtgcccccggggcact 43202539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 53 - 88
Target Start/End: Original strand, 54897312 - 54897347
Alignment:
Q  53 aatgctaaccagtgcccccggggcactggataagga 88  Q
    |||||||||| |||||||||||||||||| ||||||    
T  54897312 aatgctaaccggtgcccccggggcactggttaagga 54897347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 8e-16; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 8e-16
Query Start/End: Original strand, 43 - 141
Target Start/End: Original strand, 8700859 - 8700957
Alignment:
Q  43 atttaagggcaatgctaaccagtgcccccggggcactggataaggaacaataaatagtaattaaataaatgaatttcacttaattcatctcaattaaag 141  Q
    |||||||||||||||||||| |||| |||| ||||| ||||||||||||||||||||  | |||||| ||| || |||||| ||| | || ||||||||    
T  8700859 atttaagggcaatgctaaccggtgctcccgaggcaccggataaggaacaataaataggcaataaatagatggatctcacttgatttaccttaattaaag 8700957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 45 - 98
Target Start/End: Complemental strand, 12307433 - 12307380
Alignment:
Q  45 ttaagggcaatgctaaccagtgcccccggggcactggataaggaacaataaata 98  Q
    |||||||||||||||||| ||||||||||| || ||||||||||||||||||||    
T  12307433 ttaagggcaatgctaaccggtgcccccgggccattggataaggaacaataaata 12307380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 55 - 99
Target Start/End: Complemental strand, 2484293 - 2484249
Alignment:
Q  55 tgctaaccagtgcccccggggcactggataaggaacaataaatag 99  Q
    ||||||||||||||||||||||||||||||||||||| |||||||    
T  2484293 tgctaaccagtgcccccggggcactggataaggaacattaaatag 2484249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 48 - 96
Target Start/End: Original strand, 2480707 - 2480755
Alignment:
Q  48 agggcaatgctaaccagtgcccccggggcactggataaggaacaataaa 96  Q
    |||| ||||||| ||||||||||||||||||||| ||||||||||||||    
T  2480707 agggtaatgctatccagtgcccccggggcactggttaaggaacaataaa 2480755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 57 - 116
Target Start/End: Original strand, 12306955 - 12307014
Alignment:
Q  57 ctaaccagtgcccccggggcactggataaggaacaataaatagtaattaaataaatgaat 116  Q
    |||||| ||||||||||||||||||||||| || |||||||||  | |||||||||||||    
T  12306955 ctaaccggtgcccccggggcactggataagaaataataaatagacaataaataaatgaat 12307014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 55 - 116
Target Start/End: Complemental strand, 8701374 - 8701313
Alignment:
Q  55 tgctaaccagtgcccccggggcactggataaggaacaataaatagtaattaaataaatgaat 116  Q
    |||||||| |||||||||||||||||| |||| || |||||||||  | |||||||||||||    
T  8701374 tgctaaccggtgcccccggggcactggttaagaaataataaataggcaataaataaatgaat 8701313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 37 - 87
Target Start/End: Original strand, 392084 - 392134
Alignment:
Q  37 atttaaatttaagggcaatgctaaccagtgcccccggggcactggataagg 87  Q
    |||| |||||| ||| |||||||||| |||||||||||||||||| |||||    
T  392084 attttaatttatgggaaatgctaaccggtgcccccggggcactggttaagg 392134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 48 - 87
Target Start/End: Original strand, 27433491 - 27433530
Alignment:
Q  48 agggcaatgctaaccagtgcccccggggcactggataagg 87  Q
    |||| |||||||||| |||||||||||||||||| |||||    
T  27433491 agggaaatgctaaccggtgcccccggggcactggttaagg 27433530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000003; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 55 - 99
Target Start/End: Original strand, 23269929 - 23269973
Alignment:
Q  55 tgctaaccagtgcccccggggcactggataaggaacaataaatag 99  Q
    ||||||||||||||| ||||||||||||||||||||| |||||||    
T  23269929 tgctaaccagtgccctcggggcactggataaggaacattaaatag 23269973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 55 - 99
Target Start/End: Original strand, 44678132 - 44678176
Alignment:
Q  55 tgctaaccagtgcccccggggcactggataaggaacaataaatag 99  Q
    |||||||||||||||| |||||||||||||||||||| |||||||    
T  44678132 tgctaaccagtgccccgggggcactggataaggaacattaaatag 44678176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 44 - 97
Target Start/End: Complemental strand, 45225800 - 45225747
Alignment:
Q  44 tttaagggcaatgctaaccagtgcccccggggcactggataaggaacaataaat 97  Q
    |||||||||||||||| |||||||| |||||||||||| ||| || ||||||||    
T  45225800 tttaagggcaatgctatccagtgcctccggggcactggttaaagagcaataaat 45225747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 45 - 88
Target Start/End: Complemental strand, 28726096 - 28726053
Alignment:
Q  45 ttaagggcaatgctaaccagtgcccccggggcactggataagga 88  Q
    ||||||| |||||||||| |||||||||||||||||| ||||||    
T  28726096 ttaagggaaatgctaaccggtgcccccggggcactggttaagga 28726053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 42 - 81
Target Start/End: Complemental strand, 42770183 - 42770144
Alignment:
Q  42 aatttaagggcaatgctaaccagtgcccccggggcactgg 81  Q
    |||||||||| |||||||||| ||||||||||||||||||    
T  42770183 aatttaagggaaatgctaaccggtgcccccggggcactgg 42770144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 53 - 96
Target Start/End: Complemental strand, 44681725 - 44681682
Alignment:
Q  53 aatgctaaccagtgcccccggggcactggataaggaacaataaa 96  Q
    ||||||| |||||||||| |||||||||| ||||||||||||||    
T  44681725 aatgctatccagtgccccgggggcactggttaaggaacaataaa 44681682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 48 - 88
Target Start/End: Original strand, 29657770 - 29657810
Alignment:
Q  48 agggcaatgctaaccagtgcccccggggcactggataagga 88  Q
    |||| |||||||||| |||||||||||||||||| ||||||    
T  29657770 agggaaatgctaaccggtgcccccggggcactggttaagga 29657810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 53 - 88
Target Start/End: Complemental strand, 38595935 - 38595900
Alignment:
Q  53 aatgctaaccagtgcccccggggcactggataagga 88  Q
    |||||||||| |||||||||||||||||| ||||||    
T  38595935 aatgctaaccggtgcccccggggcactggttaagga 38595900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 28; Significance: 0.0000007; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 45 - 88
Target Start/End: Complemental strand, 68480 - 68437
Alignment:
Q  45 ttaagggcaatgctaaccagtgcccccggggcactggataagga 88  Q
    ||||||| |||||||||  |||||||||||||||||| ||||||    
T  68480 ttaagggaaatgctaactggtgcccccggggcactggttaagga 68437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 28; Significance: 0.0000007; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 48 - 87
Target Start/End: Complemental strand, 53872 - 53833
Alignment:
Q  48 agggcaatgctaaccagtgcccccggggcactggataagg 87  Q
    |||| |||||||||| |||||||||||||||||| |||||    
T  53872 agggaaatgctaaccggtgcccccggggcactggttaagg 53833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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