View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5060-Insertion-9 (Length: 315)
Name: NF5060-Insertion-9
Description: NF5060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5060-Insertion-9 |
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Alignment Details
Target: chr4 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 7 - 312
Target Start/End: Original strand, 20738938 - 20739241
Alignment:
| Q |
7 |
atatgtcatttatcaacactttgtattaagctccaaaatttgggaatgtcatataccttaatgacaannnnnnnngttgcaggtcattaagatttgtggc |
106 |
Q |
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| T |
20738938 |
atatgtcatttatcaacactttgtattaagctccaaaatttcggaatgtcatataccttaatgacaatttttt--gttgcaggtcattaagatttgtggc |
20739035 |
T |
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| Q |
107 |
tggaaacatttaaccaatacagctcctattttaagtgttgaagtgagtcacgtagtatgcactaaatctcgcaaatattacttttacttttctttaacaa |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
20739036 |
tggaaacatttaaccaatacagctcctattttaagtgttgaagtgagtcacgtagtatgcactaaatctcgcaaatattacttttaattttctttaacaa |
20739135 |
T |
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| Q |
207 |
ctaacaaatatttctatatcattttattacggcaaaacttgttaagtaagtgaaaagagagatggtgcctactaaaacaagcattctctttacgcaaact |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20739136 |
ctaacaaatatttctatatcattttattacggcaaaacttgttaagtaagtgaaaagagagatggtgcctactaaaacaagcattctctttacgcaaact |
20739235 |
T |
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| Q |
307 |
tttcac |
312 |
Q |
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|||||| |
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| T |
20739236 |
tttcac |
20739241 |
T |
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