View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5060_low_1 (Length: 601)
Name: NF5060_low_1
Description: NF5060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5060_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 511; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 511; E-Value: 0
Query Start/End: Original strand, 24 - 582
Target Start/End: Complemental strand, 2494587 - 2494029
Alignment:
| Q |
24 |
gttctctcaccggagcccaaattcctcttcaccaccaccgatctcatcttcctactacccctccgcccctcacatgcttcttgctctctccgccgcctta |
123 |
Q |
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| T |
2494587 |
gttctctcaccggagcccaaattcctcttcaccaccaccgatctcatcttcctactacccctccgcccctcacatgcttcttgctctctccgccgcctta |
2494488 |
T |
|
| Q |
124 |
ccggaaaacgttgcagctccaaaccaaactatgttgatgaattctcactctaacaattctagaaagcgtttcaggacaaagtttacacaagatcagaaag |
223 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |
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| T |
2494487 |
ccggaaaacgttgcagctccaaaccaaaccatgttgatgaattctcactctaacaattcaagaaagcgtttcaggacaaagtttacacaagatcagaagg |
2494388 |
T |
|
| Q |
224 |
ataagatgctgaaatttgctgagaaagttgggtggaagatgcagaaaaaagatgatgaatttgttcatgagttttgtaatgaaattggtgttgatcgtag |
323 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2494387 |
ataagatgctgaaatttgctgagaaagttgggtggaagatgcagaaaaaagatgatgaatttgttcatgagttttgtaatgaaattggtgttgatcgtag |
2494288 |
T |
|
| Q |
324 |
tgttcttaaggtttggatgcataacaacaaaaacactttagccaaacgagaaaaccttaacaacaatgagaatattaatgatggtgttaagagttttcag |
423 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |||||| || | ||||||||||||||||||||||||||||| |
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| T |
2494287 |
tgttcttaaggtttggatgcataacaacaagaacactttagctaaacgagaaaacattaacactaacaatgatattaatgatggtgttaagagttttcag |
2494188 |
T |
|
| Q |
424 |
ctacctcttgaagatgaagaacacaagaataatgttgagattcatggtcttaatcacaatcattatcagaatgaaggtggagttgttggagtaactgttc |
523 |
Q |
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| T |
2494187 |
ctacctcttgaagatgaagaacacaagaataatgttgagattcatggtcttaatcacaatcattatcagaatgaaggtggagttgttggagtaactgttc |
2494088 |
T |
|
| Q |
524 |
gtgctaatggttcatcatcttcttcttaatctttaattaatgtaataaataaagtaatt |
582 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2494087 |
gtgctaatggttcatcatcttcttcttaatctttaattaatgtaataaataaagtaatt |
2494029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 236 - 362
Target Start/End: Complemental strand, 3683641 - 3683515
Alignment:
| Q |
236 |
aatttgctgagaaagttgggtggaagatgcagaaaaaagatgatgaatttgttcatgagttttgtaatgaaattggtgttgatcgtagtgttcttaaggt |
335 |
Q |
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|||||||||| ||||||||||||||||||||||| | |||||| ||| | || ||| ||||| |||||| ||||||||||| | |||||||| || || |
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| T |
3683641 |
aatttgctgataaagttgggtggaagatgcagaagagagatgaagaaatggtgaatggtttttgcaatgaagttggtgttgatagaagtgttctcaaagt |
3683542 |
T |
|
| Q |
336 |
ttggatgcataacaacaaaaacacttt |
362 |
Q |
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|||||||||||| || || |||||||| |
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| T |
3683541 |
ttggatgcataataataagaacacttt |
3683515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 196 - 360
Target Start/End: Complemental strand, 14021574 - 14021410
Alignment:
| Q |
196 |
aggacaaagtttacacaagatcagaaagataagatgctgaaatttgctgagaaagttgggtggaagatgcagaaaaaagatgatgaatttgttcatgagt |
295 |
Q |
| |
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|||||||| || || || || ||||| ||||||||| || | || ||||||||| | || |||| || |||||| | ||||| | || ||||| || | |
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| T |
14021574 |
aggacaaaattcacgcaggaacagaaggataagatgttggagttagctgagaaattgggttggagaattcagaaacatgatgaaggtttggttcaagaat |
14021475 |
T |
|
| Q |
296 |
tttgtaatgaaattggtgttgatcgtagtgttcttaaggtttggatgcataacaacaaaaacact |
360 |
Q |
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| T |
14021474 |
tctgtaatgaaagtggtgttaagcgtcatgttcttaaggtttggatgcataacaacaaacacact |
14021410 |
T |
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