View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5060_low_2 (Length: 477)
Name: NF5060_low_2
Description: NF5060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5060_low_2 |
 | |
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| [»] scaffold0006 (1 HSPs) |
| | |
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Alignment Details
Target: chr4 (Bit Score: 431; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 1 - 467
Target Start/End: Original strand, 18426659 - 18427125
Alignment:
| Q |
1 |
atagcttgtttggagaataatcttctctttctaagtactctaaccattgttacaaagaattcaatgtttaaatttcctaaaaggtttgagtccacaacat |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18426659 |
atagcttgtttggagaataatcttctctttctaagtactctaaccattgttacaaagaattcaatgtttaaatttcctaaaaggtttgagtccacaacat |
18426758 |
T |
|
| Q |
101 |
caattgtcaactttagtaatggcataacttcatttatcatctcaaaattgttagtatcaatgtaaattttcaaaatccaagtcaacgagttcatgaaatc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18426759 |
caattgtcaactttagtaatggcataacttcatttaccatctcaaaattgttagtatcaatgtaaattttcaaaatccaagtcaacgagttcatgaaatc |
18426858 |
T |
|
| Q |
201 |
catgtttttgccaaccaaaggcttcatcatgttgttgatcattgcttcattccacaaaagatgaataattttcaaaccttcttcgaaaccattggtattt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||||||| |
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|
| T |
18426859 |
catgtttttgccaaccaaaggcttcatcatgttgttgatcattgcttcattccacaaaagacgaataattttcaaagcttcttctaaaccattggtattt |
18426958 |
T |
|
| Q |
301 |
ccttctttgaatttctttttaatcaccataaccatagcctttgttacacctacttcaaccatgcatgttttatttctctcactttgtttagcaagttcaa |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |||||||||||||||||||||| |
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|
| T |
18426959 |
ccttctttgaatttctttttaatcaccataaccatagcctttgttacacctacttcaaccatgcatattctatttctgtcactttgtttagcaagttcaa |
18427058 |
T |
|
| Q |
401 |
gaatcttctccattgatggttgaaaacaattaggaagctcaagattcttgacaagtttttgatgatg |
467 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
18427059 |
gaatcttctccattgatgcttgaaaacaattaggaagctcaagattcttgacaagtttttgaagatg |
18427125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 275; Significance: 1e-153; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 1 - 461
Target Start/End: Complemental strand, 13626476 - 13626020
Alignment:
| Q |
1 |
atagcttgtttggagaataatcttctctttctaagtactctaaccattgttacaaagaattcaatgtttaaatttcctaaaaggtttgagtccacaacat |
100 |
Q |
| |
|
||||||||||||| || ||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| || ||||||| |
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|
| T |
13626476 |
atagcttgtttggtgagtaatcctctctttctaagtactctcaccattgttacaaagaattcaatgtgtaaatttcctaaaaggtttgaatc-acaacat |
13626378 |
T |
|
| Q |
101 |
caattgtcaactttagtaatggcataacttcatttatcatctcaaaattgttagtatcaatgtaaattttcaaaatccaagtcaacgagttcatgaaatc |
200 |
Q |
| |
|
||||||||||||||| ||||||| ||| |||||||| ||||||||||||||| |||||||||||||||||||||||||||||| | |||| |||||| |
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|
| T |
13626377 |
caattgtcaactttaataatggcgtaagttcatttactatctcaaaattgtta---tcaatgtaaattttcaaaatccaagtcaacaaattcaggaaatc |
13626281 |
T |
|
| Q |
201 |
catgtttttgccaaccaaaggcttcatcatgttgttgatcattgcttcattccacaaaagatgaataattttcaaaccttcttcgaaaccattggtattt |
300 |
Q |
| |
|
||||||||||| | ||||| | |||| | ||||||||||||| |||||||||||||||||| ||| |||||||||| ||||||| ||||||||||| ||| |
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|
| T |
13626280 |
catgtttttgcgacccaaaagtttcaccctgttgttgatcatcgcttcattccacaaaagacgaagaattttcaaagcttcttccaaaccattggtgttt |
13626181 |
T |
|
| Q |
301 |
ccttctttgaatttctttttaatcaccataaccatagcctttgttacacctacttcaaccatgcatgttttatttctctcactttgtttagcaagttcaa |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| | ||||||||| | |||||| ||| |||| |
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|
| T |
13626180 |
ccttctttgaatttctttttaatcaccataaccatagttttggttacacctacttcaaccatgcatgttctgtttctctcattctgtttaccaacttcac |
13626081 |
T |
|
| Q |
401 |
gaatcttctccattgatggttgaaaacaattaggaagctcaagattcttgacaagtttttg |
461 |
Q |
| |
|
|||||||||||||||||| |||||| ||||| |||| ||| |||||||||||||||||||| |
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|
| T |
13626080 |
gaatcttctccattgatgcttgaaagcaatttggaaactctagattcttgacaagtttttg |
13626020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 55 - 461
Target Start/End: Complemental strand, 13527196 - 13526790
Alignment:
| Q |
55 |
aagaattcaatgtttaaatttcctaaaaggtttgagtccacaacatcaattgtcaactttagtaatggcataacttcatttatcatctcaaaattgttag |
154 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| || |||||||||||||||||||| | || ||||||||||||||||| |||||| || ||||| |
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|
| T |
13527196 |
aagaattcaatgtttaaatttcttaaaaggtttgaatctacaacatcaattgtcaacttcaatactggcataacttcatttaccatctcgaagttgttgt |
13527097 |
T |
|
| Q |
155 |
tatcaatgtaaattttcaaaatccaagtcaacgagttcatgaaatccatgtttttgccaaccaaaggcttcatcatgttgttgatcattgcttcattcca |
254 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| | |||| | ||||||||| ||||||||||||| |
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|
| T |
13527096 |
tatcaatgtaaattttcaaaatccaagtcaacaaattcatgaaatccatgtttttgccaaccaaaagtttcacactattgttgatcgttgcttcattcca |
13526997 |
T |
|
| Q |
255 |
caaaagatgaataattttcaaaccttcttcgaaaccattggtatttccttctttgaatttctttttaatcaccataaccatagcctttgttacacctact |
354 |
Q |
| |
|
||||||| || ||||||||||| ||||||| |||||| |||| ||||||| |||||||||||||||||| ||||||| ||||| || |||||||||||| |
|
|
| T |
13526996 |
caaaagacgagtaattttcaaagcttcttccaaaccaatggtgtttccttgtttgaatttctttttaatgaccataatcatagttttggttacacctact |
13526897 |
T |
|
| Q |
355 |
tcaaccatgcatgttttatttctctcactttgtttagcaagttcaagaatcttctccattgatggttgaaaacaattaggaagctcaagattcttgacaa |
454 |
Q |
| |
|
| ||||||||||||| | |||||||| | |||||||||| ||||||||||||||||||||||| |||||| |||||||||||||| || |||||||||| |
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| T |
13526896 |
ttaaccatgcatgttctgtttctctcggtctgtttagcaacttcaagaatcttctccattgatgcttgaaatcaattaggaagctctaggttcttgacaa |
13526797 |
T |
|
| Q |
455 |
gtttttg |
461 |
Q |
| |
|
||||||| |
|
|
| T |
13526796 |
gtttttg |
13526790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 55 - 461
Target Start/End: Complemental strand, 21767354 - 21766948
Alignment:
| Q |
55 |
aagaattcaatgtttaaatttcctaaaaggtttgagtccacaacatcaattgtcaactttagtaatggcataacttcatttatcatctcaaaattgttag |
154 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| || |||||||||||||||||||| | |||||||||||||||||||| |||||| |||||||| |
|
|
| T |
21767354 |
aagaattcaatgtttaaatttcttaaaaggtttgaatctacaacatcaattgtcaacttcaataatggcataacttcatttagcatctcgaaattgttgt |
21767255 |
T |
|
| Q |
155 |
tatcaatgtaaattttcaaaatccaagtcaacgagttcatgaaatccatgtttttgccaaccaaaggcttcatcatgttgttgatcattgcttcattcca |
254 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| | |||| | ||||||||||| ||||||||||||| |
|
|
| T |
21767254 |
tatcaatgtaaattttcaaaatccaagtcaacaaattcatgaaatccatgtttttgccaaccaaaagtttcaccctgttgttgatcgttgcttcattcca |
21767155 |
T |
|
| Q |
255 |
caaaagatgaataattttcaaaccttcttcgaaaccattggtatttccttctttgaatttctttttaatcaccataaccatagcctttgttacacctact |
354 |
Q |
| |
|
||||||| || ||||||||||| ||||||| |||||| |||| ||||||| |||||||||||||||||| ||||||| ||||| || |||||||||||| |
|
|
| T |
21767154 |
caaaagacgagtaattttcaaagcttcttccaaaccaatggtgtttccttgtttgaatttctttttaatgaccataatcatagttttggttacacctact |
21767055 |
T |
|
| Q |
355 |
tcaaccatgcatgttttatttctctcactttgtttagcaagttcaagaatcttctccattgatggttgaaaacaattaggaagctcaagattcttgacaa |
454 |
Q |
| |
|
||||||| ||||||| | ||||||||| | |||||||||| ||||||||||||||||||||||| |||||| ||||| |||||||| ||||||||||||| |
|
|
| T |
21767054 |
tcaaccacgcatgttctgtttctctcattctgtttagcaacttcaagaatcttctccattgatgcttgaaagcaatttggaagctctagattcttgacaa |
21766955 |
T |
|
| Q |
455 |
gtttttg |
461 |
Q |
| |
|
||||||| |
|
|
| T |
21766954 |
gtttttg |
21766948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 55 - 461
Target Start/End: Complemental strand, 124551 - 124145
Alignment:
| Q |
55 |
aagaattcaatgtttaaatttcctaaaaggtttgagtccacaacatcaattgtcaactttagtaatggcataacttcatttatcatctcaaaattgttag |
154 |
Q |
| |
|
|||||||| ||||||||||||| |||||||||||| || |||||||||||||||||||| | |||||||||||||||||||| |||||| |||||||| |
|
|
| T |
124551 |
aagaattcgatgtttaaatttcttaaaaggtttgaatctacaacatcaattgtcaacttcaataatggcataacttcatttaccatctcgaaattgttgt |
124452 |
T |
|
| Q |
155 |
tatcaatgtaaattttcaaaatccaagtcaacgagttcatgaaatccatgtttttgccaaccaaaggcttcatcatgttgttgatcattgcttcattcca |
254 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| | ||||||| |||||||||||||||||||||| | |||| | ||||||||||| |||||||||||| |
|
|
| T |
124451 |
tatcaatgtaaattttcaaaatccaagttaacaaattcatgatatccatgtttttgccaaccaaaagtttcaacctgttgttgatcgctgcttcattcca |
124352 |
T |
|
| Q |
255 |
caaaagatgaataattttcaaaccttcttcgaaaccattggtatttccttctttgaatttctttttaatcaccataaccatagcctttgttacacctact |
354 |
Q |
| |
|
||||||| || ||||||||||| ||||||| |||||| |||| ||||||| |||||||||||||||||| ||||||| ||||| || |||||||||||| |
|
|
| T |
124351 |
caaaagacgagtaattttcaaagcttcttccaaaccaatggtgtttccttttttgaatttctttttaatgaccataatcatagttttggttacacctact |
124252 |
T |
|
| Q |
355 |
tcaaccatgcatgttttatttctctcactttgtttagcaagttcaagaatcttctccattgatggttgaaaacaattaggaagctcaagattcttgacaa |
454 |
Q |
| |
|
||||||||||||||| | ||||||||| | |||||||||| ||||||||||||||||||||||| |||||| |||||||||||||| ||||||||||||| |
|
|
| T |
124251 |
tcaaccatgcatgttctgtttctctcagtctgtttagcaacttcaagaatcttctccattgatgcttgaaatcaattaggaagctctagattcttgacaa |
124152 |
T |
|
| Q |
455 |
gtttttg |
461 |
Q |
| |
|
||||||| |
|
|
| T |
124151 |
gtttttg |
124145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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